Wall clock time and date at job start Tue Mar 31 2020 10:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53007 * 109.46910 * 2 1 4 4 C 1.53000 * 109.47226 * 119.99657 * 2 1 3 5 5 H 1.09000 * 109.48277 * 299.98097 * 4 2 1 6 6 C 1.53092 * 109.49034 * 179.97438 * 4 2 1 7 7 C 1.53175 * 109.16344 * 182.40494 * 6 4 2 8 8 H 1.08999 * 109.54476 * 297.11609 * 7 6 4 9 9 C 1.50697 * 109.54085 * 176.84900 * 7 6 4 10 10 O 1.21282 * 120.00444 * 0.02562 * 9 7 6 11 11 N 1.34783 * 119.99953 * 180.02562 * 9 7 6 12 12 C 1.46500 * 119.99939 * 179.97438 * 11 9 7 13 13 H 1.08994 * 112.85254 * 336.19751 * 12 11 9 14 14 C 1.53783 * 113.61283 * 107.50566 * 12 11 9 15 15 C 1.53787 * 87.08188 * 89.11232 * 14 12 11 16 16 H 1.08993 * 113.69369 * 270.87294 * 15 14 12 17 17 N 1.46506 * 113.61105 * 139.97808 * 15 14 12 18 18 C 1.36936 * 119.99463 * 107.50428 * 17 15 14 19 19 H 1.07995 * 120.00532 * 359.97438 * 18 17 15 20 20 C 1.38814 * 119.99770 * 179.97438 * 18 17 15 21 21 N 1.31617 * 119.99752 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99841 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47334 * 359.97438 * 22 20 18 24 24 H 1.48508 * 109.47195 * 120.00127 * 22 20 18 25 25 H 1.48508 * 109.47079 * 239.99568 * 22 20 18 26 26 C 1.53783 * 113.61222 * 205.00091 * 12 11 9 27 27 C 1.53180 * 109.03606 * 56.98567 * 7 6 4 28 28 C 1.53098 * 109.16075 * 303.01560 * 27 7 6 29 29 O 1.42905 * 109.41155 * 57.61062 * 28 27 7 30 30 H 1.09002 * 109.46681 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46986 * 299.99466 * 1 2 3 32 32 H 1.08997 * 109.47212 * 60.00255 * 1 2 3 33 33 H 1.08993 * 109.47336 * 240.00219 * 2 1 3 34 34 H 1.08991 * 109.47358 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.46976 * 300.00447 * 3 2 1 36 36 H 1.09001 * 109.46794 * 59.99694 * 3 2 1 37 37 H 1.09004 * 109.52333 * 302.31710 * 6 4 2 38 38 H 1.09001 * 109.52152 * 62.43354 * 6 4 2 39 39 H 0.96998 * 119.99637 * 0.02562 * 11 9 7 40 40 H 1.08993 * 113.61147 * 203.66279 * 14 12 11 41 41 H 1.08999 * 113.61508 * 334.56408 * 14 12 11 42 42 H 0.96999 * 120.00066 * 287.50143 * 17 15 14 43 43 H 0.97004 * 119.99747 * 179.97438 * 21 20 18 44 44 H 1.08999 * 113.61862 * 25.43303 * 26 12 11 45 45 H 1.08999 * 113.61549 * 156.25457 * 26 12 11 46 46 H 1.08996 * 109.52502 * 62.92172 * 27 7 6 47 47 H 1.08995 * 109.52068 * 183.05420 * 27 7 6 48 48 H 1.09000 * 109.48092 * 297.63128 * 28 27 7 49 49 H 1.08993 * 109.47885 * 177.58982 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6772 -0.2072 2.1394 6 6 3.5710 -0.7220 1.2494 7 6 4.0734 -1.4974 2.4711 8 1 3.7510 -0.9920 3.3815 9 6 5.5782 -1.5698 2.4384 10 8 6.1907 -1.0522 1.5284 11 7 6.2437 -2.2097 3.4204 12 6 7.7066 -2.2805 3.3883 13 1 8.1138 -2.1685 2.3835 14 6 8.3898 -1.3851 4.4353 15 6 8.2999 -2.5792 5.4002 16 1 7.3743 -2.6093 5.9749 17 7 9.4927 -2.7515 6.2333 18 6 9.4464 -2.4444 7.5670 19 1 8.5308 -2.0748 8.0046 20 6 10.5763 -2.6082 8.3565 21 7 11.6919 -3.0590 7.8233 22 14 10.5129 -2.1899 10.1760 23 1 9.1530 -1.7069 10.5258 24 1 10.8287 -3.4020 10.9738 25 1 11.5071 -1.1279 10.4747 26 6 8.2821 -3.4825 4.1557 27 6 3.4914 -2.9139 2.4378 28 6 1.9635 -2.8285 2.3918 29 8 1.5644 -2.0687 1.2491 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.1300 1.4427 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9564 0.8900 37 1 3.9351 -1.1996 0.3397 38 1 3.9358 0.3043 1.2928 39 1 5.7538 -2.6239 4.1480 40 1 9.4118 -1.1103 4.1746 41 1 7.7855 -0.5308 4.7404 42 1 10.3151 -3.0831 5.8402 43 1 12.4817 -3.1731 8.3750 44 1 7.5908 -4.3215 4.2351 45 1 9.2741 -3.7820 3.8177 46 1 3.8538 -3.4359 1.5522 47 1 3.8000 -3.4556 3.3318 48 1 1.5992 -2.3423 3.2968 49 1 1.5452 -3.8327 2.3248 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020877660.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:02 Heat of formation + Delta-G solvation = -74.903013 kcal Electronic energy + Delta-G solvation = -26100.124562 eV Core-core repulsion = 22448.134076 eV Total energy + Delta-G solvation = -3651.990486 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.65958 -39.39718 -37.90720 -35.72339 -34.13984 -33.90035 -32.44193 -30.39116 -29.88124 -27.54462 -26.12237 -25.15380 -24.50261 -23.91510 -22.40953 -21.61558 -20.49934 -20.01239 -18.97904 -17.40872 -17.06124 -16.74597 -16.28873 -15.78078 -15.30224 -14.94944 -14.78550 -14.60571 -14.17166 -14.03008 -13.96235 -13.78360 -13.41823 -13.17053 -12.86816 -12.67282 -12.46561 -12.17302 -11.96387 -11.88520 -11.68545 -11.67042 -11.52112 -11.34478 -11.11475 -10.94453 -10.83101 -10.78383 -10.54778 -10.35186 -10.22497 -10.03794 -9.92969 -9.60801 -9.51386 -8.94474 -8.79924 -7.01496 -5.83175 -3.12286 2.62585 3.15792 3.39017 3.42892 3.44576 3.46983 4.25737 4.41000 4.46611 4.54577 4.55190 4.69292 4.73700 4.93444 4.96359 4.99445 5.06495 5.15839 5.20374 5.27235 5.31481 5.35487 5.36567 5.41979 5.47082 5.51876 5.56775 5.64699 5.66821 5.80244 5.82604 5.83899 5.90013 5.96710 6.03048 6.09303 6.12617 6.22303 6.29444 6.48669 6.60008 6.66990 6.95183 7.05258 7.57776 7.64420 8.26753 8.35109 9.46460 10.03777 10.38138 11.39151 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.025909 B = 0.002313 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.439736 B =12100.785445 C =12238.752160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 C -0.151 4.151 4 C 0.095 3.905 5 H 0.058 0.942 6 C -0.130 4.130 7 C -0.110 4.110 8 H 0.097 0.903 9 C 0.519 3.481 10 O -0.541 6.541 11 N -0.706 5.706 12 C 0.115 3.885 13 H 0.095 0.905 14 C -0.176 4.176 15 C 0.167 3.833 16 H 0.073 0.927 17 N -0.712 5.712 18 C -0.245 4.245 19 H 0.071 0.929 20 C -0.013 4.013 21 N -0.931 5.931 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.159 4.159 27 C -0.148 4.148 28 C 0.065 3.935 29 O -0.377 6.377 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.399 0.601 40 H 0.085 0.915 41 H 0.056 0.944 42 H 0.386 0.614 43 H 0.256 0.744 44 H 0.063 0.937 45 H 0.091 0.909 46 H 0.078 0.922 47 H 0.080 0.920 48 H 0.052 0.948 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.707 2.946 -14.424 27.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 C -0.208 4.208 4 C 0.038 3.962 5 H 0.076 0.924 6 C -0.168 4.168 7 C -0.132 4.132 8 H 0.115 0.885 9 C 0.305 3.695 10 O -0.418 6.418 11 N -0.356 5.356 12 C 0.009 3.991 13 H 0.113 0.887 14 C -0.218 4.218 15 C 0.055 3.945 16 H 0.091 0.909 17 N -0.350 5.350 18 C -0.376 4.376 19 H 0.089 0.911 20 C -0.209 4.209 21 N -0.579 5.579 22 Si 0.739 3.261 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.199 4.199 27 C -0.186 4.186 28 C -0.012 4.012 29 O -0.296 6.296 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.234 0.766 40 H 0.104 0.896 41 H 0.075 0.925 42 H 0.220 0.780 43 H 0.065 0.935 44 H 0.082 0.918 45 H 0.109 0.891 46 H 0.097 0.903 47 H 0.099 0.901 48 H 0.070 0.930 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -22.383 3.280 -15.010 27.149 hybrid contribution 0.431 0.011 1.602 1.659 sum -21.952 3.292 -13.408 25.932 Atomic orbital electron populations 1.21770 0.94615 1.02337 1.01349 1.21083 0.96417 0.95748 0.97346 1.21898 1.01767 0.95011 1.02108 1.22194 0.92609 0.83112 0.98317 0.92400 1.22091 0.95152 1.01603 0.97903 1.21396 0.92330 0.98183 1.01260 0.88477 1.20464 0.89464 0.77834 0.81719 1.90689 1.69799 1.46018 1.35318 1.45732 1.07257 1.56347 1.26237 1.21826 0.78907 0.98624 0.99726 0.88720 1.24300 1.00401 0.99308 0.97793 1.21611 0.91893 0.92074 0.88927 0.90916 1.42412 1.08915 1.77271 1.06423 1.19326 0.96631 1.36484 0.85155 0.91089 1.24781 0.95912 1.01912 0.98321 1.69669 1.01356 1.51794 1.35066 0.86116 0.77254 0.77561 0.85220 1.20550 1.21809 1.21807 1.23857 1.01243 0.96485 0.98317 1.22213 0.97038 0.95430 1.03909 1.22542 0.93180 0.96642 0.88864 1.87920 1.74532 1.23404 1.43757 0.91856 0.92967 0.92819 0.90367 0.91824 0.92115 0.92518 0.90139 0.89887 0.76633 0.89607 0.92499 0.78000 0.93454 0.91811 0.89059 0.90318 0.90149 0.92965 0.88468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.05 37.16 0.34 -0.67 16 2 C -0.09 -0.68 2.72 -90.61 -0.25 -0.92 16 3 C -0.15 -1.04 8.84 37.16 0.33 -0.71 16 4 C 0.10 0.81 2.22 -26.68 -0.06 0.75 16 5 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 6 C -0.13 -1.27 3.59 -26.59 -0.10 -1.36 16 7 C -0.11 -1.05 2.61 -91.59 -0.24 -1.29 16 8 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 9 C 0.52 6.80 7.16 -10.98 -0.08 6.72 16 10 O -0.54 -9.20 15.57 5.56 0.09 -9.11 16 11 N -0.71 -8.81 5.17 -53.02 -0.27 -9.08 16 12 C 0.11 1.72 4.32 -67.12 -0.29 1.43 16 13 H 0.09 1.52 7.46 -51.93 -0.39 1.13 16 14 C -0.18 -3.08 7.68 -25.91 -0.20 -3.28 16 15 C 0.17 3.15 4.36 -67.11 -0.29 2.86 16 16 H 0.07 1.33 8.10 -51.93 -0.42 0.91 16 17 N -0.71 -17.44 5.40 -52.63 -0.28 -17.72 16 18 C -0.24 -6.67 9.97 -15.06 -0.15 -6.82 16 19 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -27.80 13.06 55.49 0.72 -27.08 16 22 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 26 C -0.16 -2.48 7.58 -25.92 -0.20 -2.68 16 27 C -0.15 -1.17 5.30 -26.59 -0.14 -1.31 16 28 C 0.06 0.47 6.84 37.21 0.25 0.72 16 29 O -0.38 -3.52 9.73 -35.23 -0.34 -3.86 16 30 H 0.06 0.49 7.68 -51.93 -0.40 0.09 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.48 6.49 -51.93 -0.34 0.14 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.92 8.02 -51.93 -0.42 0.50 16 38 H 0.08 0.84 6.57 -51.93 -0.34 0.50 16 39 H 0.40 4.08 8.21 -40.82 -0.34 3.75 16 40 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.39 10.06 7.92 -40.82 -0.32 9.73 16 43 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.09 1.47 8.12 -51.93 -0.42 1.05 16 46 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.08 0.52 7.69 -51.93 -0.40 0.12 16 48 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 385.81 15.07 5.81 5.81 Total: -1.00 -31.97 385.81 -9.29 -41.26 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: -8.82 Total: 9.75 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -1.16 Total: -7.02 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: 0.17 Total: -53.88 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -0.26 Total: -12.97 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.97 -9.29 -41.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020877660.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.642 kcal (2) G-P(sol) polarization free energy of solvation -31.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds