Wall clock time and date at job start Tue Mar 31 2020 10:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53007 * 109.46910 * 2 1 4 4 C 1.53000 * 109.47226 * 119.99657 * 2 1 3 5 5 H 1.09000 * 109.48277 * 299.98097 * 4 2 1 6 6 C 1.53092 * 109.49034 * 179.97438 * 4 2 1 7 7 C 1.53175 * 109.16344 * 182.40494 * 6 4 2 8 8 H 1.08999 * 109.54476 * 297.11609 * 7 6 4 9 9 C 1.50697 * 109.54085 * 176.84900 * 7 6 4 10 10 O 1.21282 * 120.00444 * 0.02562 * 9 7 6 11 11 N 1.34783 * 119.99953 * 180.02562 * 9 7 6 12 12 C 1.46500 * 119.99939 * 179.97438 * 11 9 7 13 13 H 1.08994 * 112.85254 * 336.19751 * 12 11 9 14 14 C 1.53783 * 113.61283 * 107.50566 * 12 11 9 15 15 C 1.53787 * 87.08188 * 89.11232 * 14 12 11 16 16 H 1.08993 * 113.69369 * 270.87294 * 15 14 12 17 17 N 1.46506 * 113.61105 * 139.97808 * 15 14 12 18 18 C 1.36936 * 119.99463 * 107.50428 * 17 15 14 19 19 H 1.07995 * 120.00532 * 359.97438 * 18 17 15 20 20 C 1.38814 * 119.99770 * 179.97438 * 18 17 15 21 21 N 1.31617 * 119.99752 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99841 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47334 * 359.97438 * 22 20 18 24 24 H 1.48508 * 109.47195 * 120.00127 * 22 20 18 25 25 H 1.48508 * 109.47079 * 239.99568 * 22 20 18 26 26 C 1.53783 * 113.61222 * 205.00091 * 12 11 9 27 27 C 1.53180 * 109.03606 * 56.98567 * 7 6 4 28 28 C 1.53098 * 109.16075 * 303.01560 * 27 7 6 29 29 O 1.42905 * 109.41155 * 57.61062 * 28 27 7 30 30 H 1.09002 * 109.46681 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46986 * 299.99466 * 1 2 3 32 32 H 1.08997 * 109.47212 * 60.00255 * 1 2 3 33 33 H 1.08993 * 109.47336 * 240.00219 * 2 1 3 34 34 H 1.08991 * 109.47358 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.46976 * 300.00447 * 3 2 1 36 36 H 1.09001 * 109.46794 * 59.99694 * 3 2 1 37 37 H 1.09004 * 109.52333 * 302.31710 * 6 4 2 38 38 H 1.09001 * 109.52152 * 62.43354 * 6 4 2 39 39 H 0.96998 * 119.99637 * 0.02562 * 11 9 7 40 40 H 1.08993 * 113.61147 * 203.66279 * 14 12 11 41 41 H 1.08999 * 113.61508 * 334.56408 * 14 12 11 42 42 H 0.96999 * 120.00066 * 287.50143 * 17 15 14 43 43 H 0.97004 * 119.99747 * 179.97438 * 21 20 18 44 44 H 1.08999 * 113.61862 * 25.43303 * 26 12 11 45 45 H 1.08999 * 113.61549 * 156.25457 * 26 12 11 46 46 H 1.08996 * 109.52502 * 62.92172 * 27 7 6 47 47 H 1.08995 * 109.52068 * 183.05420 * 27 7 6 48 48 H 1.09000 * 109.48092 * 297.63128 * 28 27 7 49 49 H 1.08993 * 109.47885 * 177.58982 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6772 -0.2072 2.1394 6 6 3.5710 -0.7220 1.2494 7 6 4.0734 -1.4974 2.4711 8 1 3.7510 -0.9920 3.3815 9 6 5.5782 -1.5698 2.4384 10 8 6.1907 -1.0522 1.5284 11 7 6.2437 -2.2097 3.4204 12 6 7.7066 -2.2805 3.3883 13 1 8.1138 -2.1685 2.3835 14 6 8.3898 -1.3851 4.4353 15 6 8.2999 -2.5792 5.4002 16 1 7.3743 -2.6093 5.9749 17 7 9.4927 -2.7515 6.2333 18 6 9.4464 -2.4444 7.5670 19 1 8.5308 -2.0748 8.0046 20 6 10.5763 -2.6082 8.3565 21 7 11.6919 -3.0590 7.8233 22 14 10.5129 -2.1899 10.1760 23 1 9.1530 -1.7069 10.5258 24 1 10.8287 -3.4020 10.9738 25 1 11.5071 -1.1279 10.4747 26 6 8.2821 -3.4825 4.1557 27 6 3.4914 -2.9139 2.4378 28 6 1.9635 -2.8285 2.3918 29 8 1.5644 -2.0687 1.2491 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.1300 1.4427 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9564 0.8900 37 1 3.9351 -1.1996 0.3397 38 1 3.9358 0.3043 1.2928 39 1 5.7538 -2.6239 4.1480 40 1 9.4118 -1.1103 4.1746 41 1 7.7855 -0.5308 4.7404 42 1 10.3151 -3.0831 5.8402 43 1 12.4817 -3.1731 8.3750 44 1 7.5908 -4.3215 4.2351 45 1 9.2741 -3.7820 3.8177 46 1 3.8538 -3.4359 1.5522 47 1 3.8000 -3.4556 3.3318 48 1 1.5992 -2.3423 3.2968 49 1 1.5452 -3.8327 2.3248 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020877660.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:01 Heat of formation + Delta-G solvation = -95.611783 kcal Electronic energy + Delta-G solvation = -26101.022562 eV Core-core repulsion = 22448.134076 eV Total energy + Delta-G solvation = -3652.888486 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.61256 -40.39171 -39.14737 -36.33171 -35.77594 -34.87250 -33.84464 -31.76195 -31.00921 -28.13144 -27.06774 -26.55594 -26.11563 -24.66103 -23.84978 -22.60381 -21.13817 -20.90287 -20.39266 -19.15825 -18.24178 -17.44534 -17.19753 -16.89502 -16.64964 -16.18675 -15.68741 -15.58669 -15.42777 -15.28644 -15.00825 -14.63727 -14.50057 -14.16935 -13.99246 -13.54528 -13.44366 -13.39266 -13.33684 -12.98131 -12.85212 -12.67948 -12.58980 -12.38175 -12.16118 -12.10994 -11.98189 -11.85670 -11.76119 -11.71048 -11.44310 -11.28230 -11.18089 -10.90269 -10.86154 -10.36288 -10.02528 -8.99772 -7.95413 -5.23986 1.47742 1.48402 1.58173 1.58251 2.11577 2.56101 2.83404 3.36235 3.54815 3.58100 3.69594 3.75421 3.85324 3.91633 3.95079 4.07263 4.11331 4.29824 4.31193 4.31510 4.33612 4.41673 4.50133 4.63448 4.72218 4.73231 4.79741 4.81982 4.84694 4.89637 4.91577 5.02288 5.05019 5.06647 5.11910 5.14245 5.19368 5.22576 5.26602 5.30309 5.43854 5.49436 5.50774 5.70132 6.26640 6.34697 6.55727 7.23946 7.32815 8.09353 8.31557 9.28036 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.025909 B = 0.002313 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.439736 B =12100.785445 C =12238.752160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.089 4.089 3 C -0.148 4.148 4 C 0.100 3.900 5 H 0.071 0.929 6 C -0.126 4.126 7 C -0.104 4.104 8 H 0.121 0.879 9 C 0.518 3.482 10 O -0.584 6.584 11 N -0.695 5.695 12 C 0.133 3.867 13 H 0.085 0.915 14 C -0.173 4.173 15 C 0.155 3.845 16 H 0.085 0.915 17 N -0.728 5.728 18 C -0.241 4.241 19 H 0.080 0.920 20 C -0.079 4.079 21 N -0.970 5.970 22 Si 0.972 3.028 23 H -0.263 1.263 24 H -0.294 1.294 25 H -0.297 1.297 26 C -0.143 4.143 27 C -0.143 4.143 28 C 0.061 3.939 29 O -0.393 6.393 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.052 0.948 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.076 0.924 39 H 0.414 0.586 40 H 0.067 0.933 41 H 0.055 0.945 42 H 0.374 0.626 43 H 0.250 0.750 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.062 0.938 47 H 0.101 0.899 48 H 0.069 0.931 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.396 2.919 -13.629 28.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.108 4.108 3 C -0.205 4.205 4 C 0.042 3.958 5 H 0.088 0.912 6 C -0.164 4.164 7 C -0.125 4.125 8 H 0.138 0.862 9 C 0.306 3.694 10 O -0.464 6.464 11 N -0.346 5.346 12 C 0.026 3.974 13 H 0.104 0.896 14 C -0.215 4.215 15 C 0.045 3.955 16 H 0.103 0.897 17 N -0.365 5.365 18 C -0.373 4.373 19 H 0.098 0.902 20 C -0.271 4.271 21 N -0.621 5.621 22 Si 0.802 3.198 23 H -0.188 1.188 24 H -0.221 1.221 25 H -0.225 1.225 26 C -0.182 4.182 27 C -0.181 4.181 28 C -0.015 4.015 29 O -0.313 6.313 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.251 0.749 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.206 0.794 43 H 0.059 0.941 44 H 0.106 0.894 45 H 0.103 0.897 46 H 0.081 0.919 47 H 0.119 0.881 48 H 0.087 0.913 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -25.153 3.250 -14.219 29.076 hybrid contribution 1.220 0.041 1.265 1.758 sum -23.933 3.291 -12.954 27.412 Atomic orbital electron populations 1.21725 0.93811 1.01986 1.02079 1.21101 0.97048 0.95990 0.96645 1.21873 1.01056 0.94670 1.02900 1.22185 0.91338 0.83190 0.99058 0.91161 1.22038 0.96322 1.00973 0.97092 1.21428 0.89378 0.99656 1.02016 0.86162 1.21129 0.90912 0.76614 0.80778 1.90678 1.70975 1.47778 1.36972 1.45616 1.06089 1.56223 1.26718 1.21483 0.80355 0.97121 0.98404 0.89646 1.24151 0.99854 0.99110 0.98386 1.21954 0.90399 0.93738 0.89402 0.89669 1.42620 1.10181 1.77477 1.06223 1.19741 0.96595 1.34569 0.86399 0.90239 1.25594 0.95882 1.03109 1.02523 1.69824 1.01935 1.53999 1.36336 0.85088 0.77667 0.76781 0.80310 1.18758 1.22088 1.22463 1.23668 1.01662 0.96975 0.95905 1.22216 0.97589 0.94098 1.04192 1.22720 0.92484 0.97406 0.88894 1.87912 1.74649 1.23764 1.44948 0.92700 0.92281 0.92055 0.91638 0.92893 0.91349 0.91713 0.92495 0.90572 0.74860 0.91425 0.92579 0.79439 0.94094 0.89377 0.89733 0.91884 0.88073 0.91264 0.87062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.05 71.98 0.65 -1.08 16 2 C -0.09 -1.30 2.72 -10.79 -0.03 -1.33 16 3 C -0.15 -1.89 8.84 71.98 0.64 -1.26 16 4 C 0.10 1.54 2.22 30.62 0.07 1.61 16 5 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 6 C -0.13 -2.38 3.59 30.68 0.11 -2.27 16 7 C -0.10 -1.76 2.61 -11.42 -0.03 -1.79 16 8 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 9 C 0.52 12.85 7.16 87.66 0.63 13.47 16 10 O -0.58 -19.81 15.57 -3.04 -0.05 -19.86 16 11 N -0.70 -15.84 5.17 -440.03 -2.28 -18.11 16 12 C 0.13 3.81 4.32 45.52 0.20 4.01 16 13 H 0.09 2.70 7.46 -2.39 -0.02 2.68 16 14 C -0.17 -5.95 7.68 31.12 0.24 -5.71 16 15 C 0.15 5.64 4.36 45.52 0.20 5.84 16 16 H 0.09 2.89 8.10 -2.39 -0.02 2.87 16 17 N -0.73 -35.49 5.40 -320.43 -1.73 -37.22 16 18 C -0.24 -12.99 9.97 84.03 0.84 -12.16 16 19 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 20 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 21 N -0.97 -58.90 13.06 21.65 0.28 -58.62 16 22 Si 0.97 45.34 29.55 68.60 2.03 47.37 16 23 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 24 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 25 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 26 C -0.14 -4.20 7.58 31.12 0.24 -3.97 16 27 C -0.14 -1.89 5.30 30.69 0.16 -1.73 16 28 C 0.06 0.71 6.84 72.01 0.49 1.20 16 29 O -0.39 -6.62 9.73 -148.98 -1.45 -8.07 16 30 H 0.05 0.78 7.68 -2.39 -0.02 0.76 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.05 0.79 6.49 -2.39 -0.02 0.77 16 35 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.06 1.33 8.02 -2.39 -0.02 1.31 16 38 H 0.08 1.52 6.57 -2.39 -0.02 1.51 16 39 H 0.41 7.06 8.21 -92.71 -0.76 6.30 16 40 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 41 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.37 19.78 7.92 -92.71 -0.73 19.05 16 43 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 44 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.08 2.66 8.12 -2.39 -0.02 2.64 16 46 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.10 0.92 7.69 -2.39 -0.02 0.90 16 48 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 49 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -69.50 385.81 1.10 -68.39 By element: Atomic # 1 Polarization: 35.84 SS G_CDS: -0.57 Total: 35.27 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: 4.86 Total: -9.15 kcal Atomic # 7 Polarization: -110.23 SS G_CDS: -3.72 Total: -113.96 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -1.50 Total: -27.93 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -69.50 1.10 -68.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020877660.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.218 kcal (2) G-P(sol) polarization free energy of solvation -69.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds