Wall clock time and date at job start Tue Mar 31 2020 10:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47073 * 2 1 4 4 C 1.53005 * 109.47186 * 119.99383 * 2 1 3 5 5 H 1.09000 * 109.48442 * 59.96940 * 4 2 1 6 6 C 1.53090 * 109.48013 * 180.02562 * 4 2 1 7 7 C 1.53176 * 109.16233 * 177.59337 * 6 4 2 8 8 H 1.09003 * 109.54450 * 62.97150 * 7 6 4 9 9 C 1.50700 * 109.54673 * 183.15301 * 7 6 4 10 10 O 1.21279 * 119.99542 * 359.82365 * 9 7 6 11 11 N 1.34769 * 120.00249 * 179.82407 * 9 7 6 12 12 C 1.46504 * 120.00154 * 180.02562 * 11 9 7 13 13 H 1.08996 * 112.84689 * 23.80370 * 12 11 9 14 14 C 1.53779 * 113.61349 * 154.99680 * 12 11 9 15 15 C 1.53782 * 87.08025 * 89.11890 * 14 12 11 16 16 H 1.09002 * 113.61052 * 270.79948 * 15 14 12 17 17 N 1.46498 * 113.61542 * 139.97648 * 15 14 12 18 18 C 1.36943 * 119.99752 * 154.72232 * 17 15 14 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 15 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 15 21 21 N 1.31624 * 119.99698 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00072 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47294 * 90.00155 * 22 20 18 24 24 H 1.48499 * 109.47218 * 210.00015 * 22 20 18 25 25 H 1.48496 * 109.47166 * 329.99846 * 22 20 18 26 26 C 1.53777 * 113.61407 * 252.49538 * 12 11 9 27 27 C 1.53179 * 109.10961 * 303.06622 * 7 6 4 28 28 C 1.53098 * 109.15815 * 56.84571 * 27 7 6 29 29 O 1.42902 * 109.48943 * 302.52447 * 28 27 7 30 30 H 1.09007 * 109.47781 * 300.00411 * 1 2 3 31 31 H 1.09004 * 109.47247 * 60.00412 * 1 2 3 32 32 H 1.09004 * 109.47486 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47592 * 239.99968 * 2 1 3 34 34 H 1.08998 * 109.47660 * 59.99441 * 3 2 1 35 35 H 1.08997 * 109.47399 * 179.97438 * 3 2 1 36 36 H 1.09004 * 109.46748 * 299.99893 * 3 2 1 37 37 H 1.09001 * 109.52380 * 57.69302 * 6 4 2 38 38 H 1.08997 * 109.57383 * 297.53179 * 6 4 2 39 39 H 0.96996 * 120.00169 * 359.97438 * 11 9 7 40 40 H 1.08997 * 113.61777 * 334.56714 * 14 12 11 41 41 H 1.09000 * 113.68921 * 203.67563 * 14 12 11 42 42 H 0.97001 * 120.00384 * 335.00588 * 17 15 14 43 43 H 0.96999 * 119.99739 * 180.02562 * 21 20 18 44 44 H 1.09001 * 113.61338 * 156.32956 * 26 12 11 45 45 H 1.09000 * 113.61355 * 25.43220 * 26 12 11 46 46 H 1.08999 * 109.52225 * 176.84129 * 27 7 6 47 47 H 1.09001 * 109.52247 * 297.03116 * 27 7 6 48 48 H 1.09004 * 109.48427 * 182.50026 * 28 27 7 49 49 H 1.09001 * 109.41683 * 62.51445 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 1 1.6763 -1.7487 1.2500 6 6 3.5709 -0.7207 1.2499 7 6 4.0734 -1.3908 2.5323 8 1 3.7525 -2.4324 2.5494 9 6 5.5783 -1.3261 2.5786 10 8 6.1907 -0.7994 1.6739 11 7 6.2436 -1.8536 3.6252 12 6 7.7066 -1.7903 3.6704 13 1 8.1138 -0.9778 3.0688 14 6 8.2820 -1.8499 5.0953 15 6 8.3000 -3.3797 4.9395 16 1 7.3742 -3.8615 5.2541 17 7 9.4927 -4.0134 5.5070 18 6 9.4448 -5.3192 5.9169 19 1 8.5290 -5.8831 5.8175 20 6 10.5732 -5.9180 6.4600 21 7 11.6891 -5.2305 6.5814 22 14 10.5081 -7.6993 7.0183 23 1 10.8857 -8.5863 5.8887 24 1 11.4561 -7.9003 8.1436 25 1 9.1310 -8.0276 7.4666 26 6 8.3898 -3.1454 3.4223 27 6 3.4915 -0.6555 3.7435 28 6 1.9636 -0.6566 3.6455 29 8 1.5643 -0.0471 2.4162 30 1 -0.3635 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.6766 1.9565 0.8899 35 1 3.1299 1.4426 0.0005 36 1 1.6766 1.9563 -0.8900 37 1 3.9349 0.3059 1.2087 38 1 3.9365 -1.2719 0.3835 39 1 5.7539 -2.2746 4.3489 40 1 7.5907 -1.4970 5.8605 41 1 9.2745 -1.4085 5.1856 42 1 10.3151 -3.5069 5.5963 43 1 12.4777 -5.6490 6.9606 44 1 9.4119 -3.0581 3.0537 45 1 7.7855 -3.8384 2.8369 46 1 3.7995 -1.1608 4.6589 47 1 3.8537 0.3725 3.7542 48 1 1.5452 -0.0963 4.4817 49 1 1.5992 -1.6834 3.6774 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020877661.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:05 Heat of formation + Delta-G solvation = -73.686845 kcal Electronic energy + Delta-G solvation = -26159.194324 eV Core-core repulsion = 22507.256575 eV Total energy + Delta-G solvation = -3651.937749 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.67249 -39.41841 -37.91400 -35.57201 -34.11986 -33.88454 -32.44399 -30.36260 -29.87586 -27.44208 -26.32910 -25.15274 -24.51891 -23.87377 -22.49079 -21.72606 -20.16283 -20.03366 -18.97732 -17.44795 -17.08443 -16.45897 -16.20164 -15.75543 -15.29996 -15.16941 -14.93446 -14.51850 -14.16185 -14.10100 -13.96986 -13.80378 -13.44214 -13.11561 -12.74204 -12.62973 -12.30749 -12.16794 -12.02264 -11.88447 -11.87435 -11.66635 -11.49149 -11.15525 -10.93484 -10.92932 -10.85315 -10.78843 -10.57654 -10.34508 -10.25394 -10.02187 -9.92915 -9.60399 -9.50929 -8.93847 -8.79728 -7.01427 -5.82891 -3.12093 2.62885 3.16043 3.39505 3.44534 3.46324 3.48006 4.26240 4.41467 4.46287 4.54727 4.55159 4.69437 4.74019 4.89499 4.98612 5.02241 5.08945 5.16674 5.20545 5.30496 5.35912 5.36487 5.42159 5.46662 5.47195 5.52832 5.61362 5.66567 5.70002 5.80594 5.83780 5.85239 5.90210 5.96381 6.11064 6.13002 6.18749 6.22449 6.29530 6.48764 6.60127 6.67135 6.95259 7.05320 7.57976 7.63987 8.26962 8.35430 9.46629 10.03955 10.38290 11.39350 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.028889 B = 0.002311 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.004992 B =12113.695156 C =12431.873850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 C -0.147 4.147 4 C 0.095 3.905 5 H 0.058 0.942 6 C -0.131 4.131 7 C -0.110 4.110 8 H 0.097 0.903 9 C 0.519 3.481 10 O -0.542 6.542 11 N -0.706 5.706 12 C 0.115 3.885 13 H 0.095 0.905 14 C -0.159 4.159 15 C 0.167 3.833 16 H 0.073 0.927 17 N -0.712 5.712 18 C -0.246 4.246 19 H 0.071 0.929 20 C -0.013 4.013 21 N -0.931 5.931 22 Si 0.908 3.092 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C -0.176 4.176 27 C -0.147 4.147 28 C 0.064 3.936 29 O -0.373 6.373 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.399 0.601 40 H 0.063 0.937 41 H 0.091 0.909 42 H 0.386 0.614 43 H 0.256 0.744 44 H 0.085 0.915 45 H 0.056 0.944 46 H 0.080 0.920 47 H 0.078 0.922 48 H 0.097 0.903 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.703 11.633 -9.348 27.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.105 4.105 3 C -0.205 4.205 4 C 0.037 3.963 5 H 0.075 0.925 6 C -0.169 4.169 7 C -0.131 4.131 8 H 0.115 0.885 9 C 0.305 3.695 10 O -0.418 6.418 11 N -0.356 5.356 12 C 0.009 3.991 13 H 0.113 0.887 14 C -0.199 4.199 15 C 0.055 3.945 16 H 0.091 0.909 17 N -0.350 5.350 18 C -0.377 4.377 19 H 0.089 0.911 20 C -0.209 4.209 21 N -0.579 5.579 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.208 1.208 26 C -0.218 4.218 27 C -0.185 4.185 28 C -0.013 4.013 29 O -0.292 6.292 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.234 0.766 40 H 0.082 0.918 41 H 0.109 0.891 42 H 0.220 0.780 43 H 0.066 0.934 44 H 0.104 0.896 45 H 0.075 0.925 46 H 0.098 0.902 47 H 0.097 0.903 48 H 0.115 0.885 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -22.373 11.978 -9.920 27.247 hybrid contribution 0.425 -1.438 0.766 1.683 sum -21.947 10.540 -9.155 26.011 Atomic orbital electron populations 1.21774 0.94661 1.01598 1.02099 1.21138 0.96409 0.97217 0.95768 1.21839 1.01294 0.95413 1.01908 1.22168 0.92593 0.95482 0.86018 0.92450 1.22103 0.95166 1.02993 0.96610 1.21393 0.92310 1.01877 0.97562 0.88524 1.20469 0.89483 0.77689 0.81857 1.90688 1.69813 1.44344 1.36994 1.45729 1.07257 1.59361 1.23225 1.21822 0.78911 0.99629 0.98709 0.88724 1.23859 1.01240 1.00215 0.94612 1.21608 0.91885 0.90086 0.90928 0.90925 1.42405 1.08888 1.11138 1.72574 1.19282 0.96691 0.88178 1.33523 0.91147 1.24781 0.95930 0.98394 1.01790 1.69661 1.01413 1.36085 1.50739 0.86181 0.77100 0.84809 0.78024 1.21659 1.21725 1.20751 1.24298 1.00400 0.95296 1.01800 1.22208 0.97067 1.02050 0.97221 1.22537 0.93161 0.98358 0.87223 1.87923 1.74433 1.53670 1.13218 0.91790 0.92837 0.93019 0.90109 0.91831 0.92265 0.93007 0.89652 0.90262 0.76636 0.91816 0.89058 0.77997 0.93405 0.89608 0.92502 0.90174 0.90344 0.88506 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.05 37.15 0.34 -0.66 16 2 C -0.09 -0.66 2.81 -90.62 -0.25 -0.92 16 3 C -0.15 -1.18 8.70 37.16 0.32 -0.86 16 4 C 0.10 0.79 2.38 -26.68 -0.06 0.72 16 5 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 6 C -0.13 -1.27 3.73 -26.59 -0.10 -1.36 16 7 C -0.11 -1.04 2.61 -91.59 -0.24 -1.28 16 8 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 9 C 0.52 6.78 7.16 -10.99 -0.08 6.70 16 10 O -0.54 -9.19 15.57 5.56 0.09 -9.11 16 11 N -0.71 -8.80 5.17 -53.02 -0.27 -9.08 16 12 C 0.11 1.72 4.32 -67.12 -0.29 1.43 16 13 H 0.09 1.52 7.46 -51.93 -0.39 1.13 16 14 C -0.16 -2.49 7.58 -25.92 -0.20 -2.68 16 15 C 0.17 3.16 4.36 -67.12 -0.29 2.86 16 16 H 0.07 1.33 8.10 -51.93 -0.42 0.91 16 17 N -0.71 -17.44 5.40 -52.64 -0.28 -17.73 16 18 C -0.25 -6.69 9.97 -15.06 -0.15 -6.84 16 19 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -27.81 13.06 55.49 0.72 -27.08 16 22 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 C -0.18 -3.08 7.68 -25.92 -0.20 -3.28 16 27 C -0.15 -1.15 5.30 -26.59 -0.14 -1.29 16 28 C 0.06 0.45 6.84 37.21 0.25 0.71 16 29 O -0.37 -3.35 9.06 -35.23 -0.32 -3.66 16 30 H 0.06 0.49 7.68 -51.92 -0.40 0.09 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.56 7.68 -51.93 -0.40 0.16 16 35 H 0.06 0.52 6.38 -51.93 -0.33 0.19 16 36 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.95 6.20 -51.93 -0.32 0.63 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.40 4.08 8.20 -40.82 -0.33 3.75 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.09 1.47 8.12 -51.93 -0.42 1.05 16 42 H 0.39 10.06 7.92 -40.82 -0.32 9.74 16 43 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.08 0.51 7.68 -51.93 -0.40 0.12 16 47 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 48 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 384.52 15.07 5.79 5.79 Total: -1.00 -31.85 384.52 -9.26 -41.11 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -8.78 Total: 9.89 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: -1.19 Total: -7.20 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: 0.17 Total: -53.89 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.23 Total: -12.77 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.85 -9.26 -41.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020877661.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.573 kcal (2) G-P(sol) polarization free energy of solvation -31.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds