Wall clock time and date at job start Tue Mar 31 2020 10:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47073 * 2 1 4 4 C 1.53005 * 109.47186 * 119.99383 * 2 1 3 5 5 H 1.09000 * 109.48442 * 59.96940 * 4 2 1 6 6 C 1.53090 * 109.48013 * 180.02562 * 4 2 1 7 7 C 1.53176 * 109.16233 * 177.59337 * 6 4 2 8 8 H 1.09003 * 109.54450 * 62.97150 * 7 6 4 9 9 C 1.50700 * 109.54673 * 183.15301 * 7 6 4 10 10 O 1.21279 * 119.99542 * 359.82365 * 9 7 6 11 11 N 1.34769 * 120.00249 * 179.82407 * 9 7 6 12 12 C 1.46504 * 120.00154 * 180.02562 * 11 9 7 13 13 H 1.08996 * 112.84689 * 23.80370 * 12 11 9 14 14 C 1.53779 * 113.61349 * 154.99680 * 12 11 9 15 15 C 1.53782 * 87.08025 * 89.11890 * 14 12 11 16 16 H 1.09002 * 113.61052 * 270.79948 * 15 14 12 17 17 N 1.46498 * 113.61542 * 139.97648 * 15 14 12 18 18 C 1.36943 * 119.99752 * 154.72232 * 17 15 14 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 15 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 15 21 21 N 1.31624 * 119.99698 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00072 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47294 * 90.00155 * 22 20 18 24 24 H 1.48499 * 109.47218 * 210.00015 * 22 20 18 25 25 H 1.48496 * 109.47166 * 329.99846 * 22 20 18 26 26 C 1.53777 * 113.61407 * 252.49538 * 12 11 9 27 27 C 1.53179 * 109.10961 * 303.06622 * 7 6 4 28 28 C 1.53098 * 109.15815 * 56.84571 * 27 7 6 29 29 O 1.42902 * 109.48943 * 302.52447 * 28 27 7 30 30 H 1.09007 * 109.47781 * 300.00411 * 1 2 3 31 31 H 1.09004 * 109.47247 * 60.00412 * 1 2 3 32 32 H 1.09004 * 109.47486 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47592 * 239.99968 * 2 1 3 34 34 H 1.08998 * 109.47660 * 59.99441 * 3 2 1 35 35 H 1.08997 * 109.47399 * 179.97438 * 3 2 1 36 36 H 1.09004 * 109.46748 * 299.99893 * 3 2 1 37 37 H 1.09001 * 109.52380 * 57.69302 * 6 4 2 38 38 H 1.08997 * 109.57383 * 297.53179 * 6 4 2 39 39 H 0.96996 * 120.00169 * 359.97438 * 11 9 7 40 40 H 1.08997 * 113.61777 * 334.56714 * 14 12 11 41 41 H 1.09000 * 113.68921 * 203.67563 * 14 12 11 42 42 H 0.97001 * 120.00384 * 335.00588 * 17 15 14 43 43 H 0.96999 * 119.99739 * 180.02562 * 21 20 18 44 44 H 1.09001 * 113.61338 * 156.32956 * 26 12 11 45 45 H 1.09000 * 113.61355 * 25.43220 * 26 12 11 46 46 H 1.08999 * 109.52225 * 176.84129 * 27 7 6 47 47 H 1.09001 * 109.52247 * 297.03116 * 27 7 6 48 48 H 1.09004 * 109.48427 * 182.50026 * 28 27 7 49 49 H 1.09001 * 109.41683 * 62.51445 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 1 1.6763 -1.7487 1.2500 6 6 3.5709 -0.7207 1.2499 7 6 4.0734 -1.3908 2.5323 8 1 3.7525 -2.4324 2.5494 9 6 5.5783 -1.3261 2.5786 10 8 6.1907 -0.7994 1.6739 11 7 6.2436 -1.8536 3.6252 12 6 7.7066 -1.7903 3.6704 13 1 8.1138 -0.9778 3.0688 14 6 8.2820 -1.8499 5.0953 15 6 8.3000 -3.3797 4.9395 16 1 7.3742 -3.8615 5.2541 17 7 9.4927 -4.0134 5.5070 18 6 9.4448 -5.3192 5.9169 19 1 8.5290 -5.8831 5.8175 20 6 10.5732 -5.9180 6.4600 21 7 11.6891 -5.2305 6.5814 22 14 10.5081 -7.6993 7.0183 23 1 10.8857 -8.5863 5.8887 24 1 11.4561 -7.9003 8.1436 25 1 9.1310 -8.0276 7.4666 26 6 8.3898 -3.1454 3.4223 27 6 3.4915 -0.6555 3.7435 28 6 1.9636 -0.6566 3.6455 29 8 1.5643 -0.0471 2.4162 30 1 -0.3635 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.6766 1.9565 0.8899 35 1 3.1299 1.4426 0.0005 36 1 1.6766 1.9563 -0.8900 37 1 3.9349 0.3059 1.2087 38 1 3.9365 -1.2719 0.3835 39 1 5.7539 -2.2746 4.3489 40 1 7.5907 -1.4970 5.8605 41 1 9.2745 -1.4085 5.1856 42 1 10.3151 -3.5069 5.5963 43 1 12.4777 -5.6490 6.9606 44 1 9.4119 -3.0581 3.0537 45 1 7.7855 -3.8384 2.8369 46 1 3.7995 -1.1608 4.6589 47 1 3.8537 0.3725 3.7542 48 1 1.5452 -0.0963 4.4817 49 1 1.5992 -1.6834 3.6774 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020877661.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:04 Heat of formation + Delta-G solvation = -94.203049 kcal Electronic energy + Delta-G solvation = -26160.083973 eV Core-core repulsion = 22507.256575 eV Total energy + Delta-G solvation = -3652.827398 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.61331 -40.40544 -39.15429 -36.19106 -35.77063 -34.82348 -33.84368 -31.76241 -30.96825 -28.05030 -27.24369 -26.56060 -26.17216 -24.60418 -23.88371 -22.74409 -21.02544 -20.71136 -20.39169 -19.15814 -18.28040 -17.27359 -17.11851 -16.81212 -16.56917 -16.18063 -15.86479 -15.64606 -15.54299 -15.15785 -15.08413 -14.68241 -14.54755 -14.17841 -13.89994 -13.54165 -13.46703 -13.34001 -13.27401 -12.89365 -12.81844 -12.71665 -12.58451 -12.51821 -12.18698 -12.15929 -11.85953 -11.75723 -11.74394 -11.58801 -11.47135 -11.29943 -11.17992 -10.86945 -10.85181 -10.33701 -10.02370 -8.99752 -7.95189 -5.23879 1.47767 1.49227 1.57434 1.58870 2.12092 2.56259 2.89934 3.36213 3.55763 3.59582 3.69742 3.76163 3.85406 3.91669 3.95020 4.07260 4.13670 4.26935 4.31161 4.32011 4.37496 4.40874 4.52871 4.70271 4.73133 4.74784 4.79940 4.84908 4.89364 4.89536 4.92264 5.03505 5.05972 5.09191 5.11834 5.15504 5.19457 5.23192 5.26583 5.30231 5.49044 5.50505 5.55505 5.70181 6.26685 6.36521 6.56095 7.24372 7.32850 8.09446 8.31648 9.28016 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.028889 B = 0.002311 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.004992 B =12113.695156 C =12431.873850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 C -0.144 4.144 4 C 0.099 3.901 5 H 0.070 0.930 6 C -0.128 4.128 7 C -0.103 4.103 8 H 0.119 0.881 9 C 0.517 3.483 10 O -0.584 6.584 11 N -0.696 5.696 12 C 0.133 3.867 13 H 0.085 0.915 14 C -0.143 4.143 15 C 0.155 3.845 16 H 0.085 0.915 17 N -0.728 5.728 18 C -0.243 4.243 19 H 0.079 0.921 20 C -0.079 4.079 21 N -0.970 5.970 22 Si 0.973 3.027 23 H -0.290 1.290 24 H -0.297 1.297 25 H -0.266 1.266 26 C -0.173 4.173 27 C -0.142 4.142 28 C 0.061 3.939 29 O -0.387 6.387 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.087 0.913 34 H 0.053 0.947 35 H 0.046 0.954 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.414 0.586 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.374 0.626 43 H 0.250 0.750 44 H 0.067 0.933 45 H 0.055 0.945 46 H 0.100 0.900 47 H 0.062 0.938 48 H 0.110 0.890 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.395 11.020 -8.939 29.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.108 4.108 3 C -0.201 4.201 4 C 0.042 3.958 5 H 0.088 0.912 6 C -0.166 4.166 7 C -0.124 4.124 8 H 0.137 0.863 9 C 0.305 3.695 10 O -0.464 6.464 11 N -0.347 5.347 12 C 0.027 3.973 13 H 0.104 0.896 14 C -0.182 4.182 15 C 0.045 3.955 16 H 0.103 0.897 17 N -0.365 5.365 18 C -0.375 4.375 19 H 0.097 0.903 20 C -0.271 4.271 21 N -0.621 5.621 22 Si 0.802 3.198 23 H -0.218 1.218 24 H -0.224 1.224 25 H -0.190 1.190 26 C -0.215 4.215 27 C -0.180 4.180 28 C -0.015 4.015 29 O -0.307 6.307 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.105 0.895 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.251 0.749 40 H 0.106 0.894 41 H 0.103 0.897 42 H 0.206 0.794 43 H 0.059 0.941 44 H 0.086 0.914 45 H 0.074 0.926 46 H 0.118 0.882 47 H 0.081 0.919 48 H 0.128 0.872 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -25.145 11.371 -9.510 29.189 hybrid contribution 1.217 -1.182 0.571 1.790 sum -23.928 10.189 -8.939 27.501 Atomic orbital electron populations 1.21725 0.93880 1.02029 1.02009 1.21192 0.97024 0.96733 0.95882 1.21794 1.00439 0.96027 1.01860 1.22156 0.91270 0.96167 0.86225 0.91182 1.22057 0.96398 1.01625 0.96549 1.21423 0.89306 1.03423 0.98272 0.86280 1.21147 0.90959 0.76428 0.80930 1.90677 1.70997 1.46155 1.38593 1.45616 1.06080 1.59228 1.23740 1.21477 0.80374 0.97594 0.97897 0.89644 1.23668 1.01656 0.97284 0.95618 1.21949 0.90390 0.91908 0.91245 0.89695 1.42612 1.10157 1.10603 1.73123 1.19708 0.96683 0.89350 1.31718 0.90263 1.25597 0.95892 1.02429 1.03152 1.69819 1.01978 1.37677 1.52589 0.85150 0.77514 0.80086 0.77073 1.21764 1.22400 1.19047 1.24150 0.99853 0.96963 1.00537 1.22208 0.97657 1.01087 0.97072 1.22702 0.92416 0.99507 0.86890 1.87919 1.74495 1.54366 1.13901 0.92671 0.92131 0.92303 0.89484 0.92763 0.93513 0.92126 0.91721 0.91127 0.74878 0.89391 0.89736 0.79437 0.94088 0.91427 0.92596 0.88194 0.91889 0.87153 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.05 71.98 0.65 -1.03 16 2 C -0.09 -1.26 2.81 -10.79 -0.03 -1.29 16 3 C -0.14 -2.26 8.70 71.98 0.63 -1.63 16 4 C 0.10 1.48 2.38 30.63 0.07 1.55 16 5 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 6 C -0.13 -2.37 3.73 30.68 0.11 -2.25 16 7 C -0.10 -1.73 2.61 -11.42 -0.03 -1.76 16 8 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 9 C 0.52 12.81 7.16 87.66 0.63 13.43 16 10 O -0.58 -19.78 15.57 -3.03 -0.05 -19.83 16 11 N -0.70 -15.86 5.17 -440.05 -2.27 -18.13 16 12 C 0.13 3.82 4.32 45.52 0.20 4.02 16 13 H 0.09 2.70 7.46 -2.39 -0.02 2.68 16 14 C -0.14 -4.22 7.58 31.12 0.24 -3.98 16 15 C 0.15 5.65 4.36 45.52 0.20 5.85 16 16 H 0.09 2.89 8.10 -2.39 -0.02 2.87 16 17 N -0.73 -35.55 5.40 -320.45 -1.73 -37.28 16 18 C -0.24 -13.09 9.97 84.03 0.84 -12.26 16 19 H 0.08 4.05 7.83 -2.91 -0.02 4.02 16 20 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 21 N -0.97 -58.89 13.06 21.65 0.28 -58.61 16 22 Si 0.97 45.34 29.55 68.60 2.03 47.37 16 23 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 24 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 25 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 26 C -0.17 -5.96 7.68 31.12 0.24 -5.72 16 27 C -0.14 -1.85 5.30 30.69 0.16 -1.68 16 28 C 0.06 0.69 6.84 72.01 0.49 1.18 16 29 O -0.39 -6.19 9.06 -148.98 -1.35 -7.54 16 30 H 0.05 0.77 7.68 -2.38 -0.02 0.75 16 31 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.05 0.94 7.68 -2.39 -0.02 0.92 16 35 H 0.05 0.84 6.38 -2.39 -0.02 0.82 16 36 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 37 H 0.06 1.47 6.20 -2.39 -0.01 1.45 16 38 H 0.07 1.40 8.14 -2.39 -0.02 1.39 16 39 H 0.41 7.08 8.20 -92.71 -0.76 6.32 16 40 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.08 2.66 8.12 -2.39 -0.02 2.64 16 42 H 0.37 19.80 7.92 -92.71 -0.73 19.07 16 43 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 44 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 45 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.10 0.91 7.68 -2.39 -0.02 0.89 16 47 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 49 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -69.22 384.52 1.21 -68.01 By element: Atomic # 1 Polarization: 36.13 SS G_CDS: -0.56 Total: 35.57 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: 4.86 Total: -9.56 kcal Atomic # 7 Polarization: -110.30 SS G_CDS: -3.72 Total: -114.02 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -1.40 Total: -27.37 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -69.22 1.21 -68.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020877661.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.194 kcal (2) G-P(sol) polarization free energy of solvation -69.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds