Wall clock time and date at job start Tue Mar 31 2020 10:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.53002 * 109.47233 * 240.00343 * 2 1 3 5 5 H 1.09007 * 109.47346 * 304.97548 * 4 2 1 6 6 C 1.53090 * 109.48036 * 184.94031 * 4 2 1 7 7 C 1.53175 * 109.16118 * 182.40643 * 6 4 2 8 8 H 1.08996 * 109.54503 * 176.85038 * 7 6 4 9 9 C 1.50700 * 109.62010 * 297.07059 * 7 6 4 10 10 O 1.21288 * 119.99545 * 359.59872 * 9 7 6 11 11 N 1.34774 * 120.00642 * 179.59882 * 9 7 6 12 12 C 1.46498 * 120.00479 * 179.97438 * 11 9 7 13 13 H 1.09002 * 112.84680 * 334.66821 * 12 11 9 14 14 C 1.53773 * 113.61506 * 105.86301 * 12 11 9 15 15 C 1.54047 * 86.98587 * 89.16509 * 14 12 11 16 16 H 1.09004 * 113.69202 * 270.87264 * 15 14 12 17 17 N 1.46502 * 113.62218 * 139.97916 * 15 14 12 18 18 C 1.36938 * 120.00003 * 107.50612 * 17 15 14 19 19 H 1.08003 * 119.99743 * 0.02562 * 18 17 15 20 20 C 1.38810 * 119.99886 * 180.02562 * 18 17 15 21 21 N 1.31615 * 119.99920 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99885 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47122 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47125 * 119.99846 * 22 20 18 25 25 H 1.48499 * 109.47513 * 239.99631 * 22 20 18 26 26 C 1.53775 * 113.61604 * 203.47637 * 12 11 9 27 27 C 1.53180 * 109.03710 * 56.97759 * 7 6 4 28 28 C 1.53088 * 109.16658 * 303.02018 * 27 7 6 29 29 O 1.42899 * 109.47925 * 64.99497 * 4 2 1 30 30 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 32 32 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 33 33 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 34 34 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 35 35 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 36 36 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 37 37 H 1.08991 * 109.52250 * 302.31250 * 6 4 2 38 38 H 1.09002 * 109.52270 * 62.50050 * 6 4 2 39 39 H 0.97001 * 119.99786 * 359.97438 * 11 9 7 40 40 H 1.09000 * 113.61908 * 203.66730 * 14 12 11 41 41 H 1.08998 * 113.61663 * 334.57348 * 14 12 11 42 42 H 0.97001 * 119.99802 * 287.50799 * 17 15 14 43 43 H 0.97001 * 119.99748 * 180.02562 * 21 20 18 44 44 H 1.09000 * 113.61730 * 25.42546 * 26 12 11 45 45 H 1.09003 * 113.61729 * 156.25187 * 26 12 11 46 46 H 1.08999 * 109.52428 * 183.11268 * 27 7 6 47 47 H 1.08999 * 109.57348 * 62.95988 * 27 7 6 48 48 H 1.09003 * 109.47862 * 297.62556 * 28 27 7 49 49 H 1.08994 * 109.49000 * 177.59196 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.6058 -1.7200 -1.2951 6 6 3.5659 -0.8298 -1.1889 7 6 4.0734 -1.4987 -2.4700 8 1 5.1629 -1.5288 -2.4587 9 6 3.5313 -2.9021 -2.5571 10 8 2.8149 -3.3311 -1.6774 11 7 3.8425 -3.6806 -3.6123 12 6 3.3160 -5.0451 -3.6966 13 1 3.0788 -5.4683 -2.7205 14 6 2.1879 -5.2074 -4.7289 15 6 3.2885 -5.5113 -5.7631 16 1 3.6735 -4.6244 -6.2664 17 7 2.9382 -6.5867 -6.6943 18 6 2.6364 -6.2928 -7.9973 19 1 2.6571 -5.2683 -8.3385 20 6 2.3040 -7.3117 -8.8795 21 7 2.2794 -8.5602 -8.4637 22 14 1.8917 -6.9108 -10.6567 23 1 1.9918 -5.4445 -10.8695 24 1 2.8468 -7.6072 -11.5557 25 1 0.5094 -7.3621 -10.9582 26 6 4.1585 -5.9768 -4.5836 27 6 3.5956 -0.6891 -3.6794 28 6 2.0686 -0.5858 -3.6436 29 8 1.6620 0.0167 -2.4132 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.1299 1.4426 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 3.9988 0.1666 -1.1021 38 1 3.8545 -1.4298 -0.3258 39 1 4.4152 -3.3374 -4.3160 40 1 1.5312 -6.0540 -4.5287 41 1 1.6423 -4.2851 -4.9282 42 1 2.9200 -7.5068 -6.3878 43 1 2.0474 -9.2722 -9.0802 44 1 5.2028 -5.6752 -4.6656 45 1 4.0407 -7.0334 -4.3427 46 1 3.9055 -1.1883 -4.5974 47 1 4.0292 0.3104 -3.6441 48 1 1.6350 -1.5829 -3.7209 49 1 1.7258 0.0254 -4.4784 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020877662.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:09 Heat of formation + Delta-G solvation = -70.149752 kcal Electronic energy + Delta-G solvation = -26887.506490 eV Core-core repulsion = 23235.722121 eV Total energy + Delta-G solvation = -3651.784369 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.91223 -39.16311 -37.72673 -35.43261 -34.12599 -33.82661 -32.45453 -30.22680 -29.85090 -27.31198 -26.00994 -25.16688 -24.55292 -23.76383 -22.77999 -21.83891 -20.24178 -19.65812 -18.98820 -17.19428 -16.85950 -16.59587 -16.16421 -15.72142 -15.29073 -15.08566 -14.74283 -14.47903 -14.31880 -13.93705 -13.80344 -13.54421 -13.43463 -12.85895 -12.71611 -12.60133 -12.30922 -12.14619 -12.07841 -11.89382 -11.79330 -11.67939 -11.56613 -11.04115 -10.94975 -10.90499 -10.81666 -10.70146 -10.44437 -10.30272 -10.21785 -9.95538 -9.79472 -9.60075 -9.28032 -8.95197 -8.80495 -7.01950 -5.83554 -3.12731 2.59523 3.16784 3.39033 3.44665 3.47027 3.69386 4.32691 4.49071 4.54331 4.55422 4.69572 4.78259 4.93459 4.94128 5.04306 5.09788 5.17905 5.21880 5.37106 5.42052 5.42504 5.46038 5.54144 5.54708 5.60750 5.67997 5.70283 5.78202 5.79496 5.82494 5.84465 5.87829 5.97712 6.02678 6.12749 6.21004 6.23079 6.28380 6.28695 6.47890 6.58378 6.65807 7.03999 7.18970 7.55372 7.64091 8.24466 8.34732 9.46130 10.03267 10.37509 11.38799 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.022903 B = 0.002777 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.263968 B =10081.001814 C =10468.387108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.144 4.144 4 C 0.085 3.915 5 H 0.085 0.915 6 C -0.128 4.128 7 C -0.113 4.113 8 H 0.100 0.900 9 C 0.516 3.484 10 O -0.539 6.539 11 N -0.705 5.705 12 C 0.115 3.885 13 H 0.094 0.906 14 C -0.175 4.175 15 C 0.168 3.832 16 H 0.073 0.927 17 N -0.712 5.712 18 C -0.245 4.245 19 H 0.071 0.929 20 C -0.012 4.012 21 N -0.931 5.931 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.159 4.159 27 C -0.147 4.147 28 C 0.059 3.941 29 O -0.376 6.376 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.049 0.951 35 H 0.052 0.948 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.399 0.601 40 H 0.085 0.915 41 H 0.056 0.944 42 H 0.386 0.614 43 H 0.256 0.744 44 H 0.063 0.937 45 H 0.091 0.909 46 H 0.079 0.921 47 H 0.082 0.918 48 H 0.051 0.949 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.047 18.545 15.884 24.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.104 4.104 3 C -0.201 4.201 4 C 0.027 3.973 5 H 0.102 0.898 6 C -0.166 4.166 7 C -0.134 4.134 8 H 0.118 0.882 9 C 0.302 3.698 10 O -0.417 6.417 11 N -0.355 5.355 12 C 0.010 3.990 13 H 0.112 0.888 14 C -0.218 4.218 15 C 0.056 3.944 16 H 0.091 0.909 17 N -0.350 5.350 18 C -0.376 4.376 19 H 0.089 0.911 20 C -0.209 4.209 21 N -0.579 5.579 22 Si 0.738 3.262 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.199 4.199 27 C -0.185 4.185 28 C -0.018 4.018 29 O -0.295 6.295 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.234 0.766 40 H 0.104 0.896 41 H 0.075 0.925 42 H 0.220 0.780 43 H 0.066 0.934 44 H 0.082 0.918 45 H 0.109 0.891 46 H 0.097 0.903 47 H 0.101 0.899 48 H 0.069 0.931 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.395 18.447 16.313 24.858 hybrid contribution 0.283 -0.366 -1.358 1.435 sum 3.678 18.080 14.955 23.750 Atomic orbital electron populations 1.21781 0.94790 1.01835 1.01796 1.21126 0.96457 0.96671 0.96174 1.21795 1.00625 0.95854 1.01807 1.22391 0.93192 0.96291 0.85391 0.89751 1.22033 0.97266 1.00764 0.96544 1.21436 1.01971 0.92250 0.97742 0.88219 1.20561 0.80553 0.87108 0.81536 1.90648 1.37292 1.74565 1.39148 1.45757 1.51609 1.14395 1.23759 1.21821 0.96617 0.81374 0.99232 0.88793 1.24337 0.98128 1.01490 0.97818 1.21654 0.92280 0.92483 0.88031 0.90919 1.42411 1.80684 1.04639 1.07253 1.19326 1.38950 0.93063 0.86287 0.91078 1.24775 1.02370 0.95292 0.98419 1.69667 1.54967 0.98556 1.34712 0.86121 0.77705 0.77399 0.84969 1.20518 1.21819 1.21792 1.23851 0.98711 0.99749 0.97597 1.22195 0.97936 1.01146 0.97178 1.22540 0.93066 0.98913 0.87283 1.87873 1.78657 1.49592 1.13382 0.92786 0.93005 0.91963 0.90347 0.93231 0.92870 0.91792 0.90406 0.90340 0.76617 0.89646 0.92533 0.78012 0.93444 0.91810 0.89051 0.90259 0.89898 0.93071 0.88620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.09 37.16 0.34 -1.06 16 2 C -0.09 -0.83 2.76 -90.62 -0.25 -1.08 16 3 C -0.14 -1.21 8.75 37.16 0.33 -0.89 16 4 C 0.08 0.95 2.03 -26.68 -0.05 0.90 16 5 H 0.08 1.19 5.83 -51.92 -0.30 0.89 16 6 C -0.13 -1.24 4.36 -26.59 -0.12 -1.36 16 7 C -0.11 -1.06 3.04 -91.59 -0.28 -1.33 16 8 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 9 C 0.52 6.49 5.82 -10.99 -0.06 6.43 16 10 O -0.54 -8.61 13.49 5.55 0.07 -8.53 16 11 N -0.71 -8.54 5.14 -53.02 -0.27 -8.81 16 12 C 0.12 1.68 4.29 -67.13 -0.29 1.39 16 13 H 0.09 1.47 7.50 -51.93 -0.39 1.08 16 14 C -0.18 -3.02 7.70 -25.78 -0.20 -3.22 16 15 C 0.17 3.13 4.37 -66.97 -0.29 2.83 16 16 H 0.07 1.31 8.10 -51.93 -0.42 0.89 16 17 N -0.71 -17.31 5.40 -52.50 -0.28 -17.59 16 18 C -0.25 -6.64 9.97 -15.06 -0.15 -6.79 16 19 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -27.74 13.06 55.49 0.72 -27.02 16 22 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 C -0.16 -2.45 7.57 -25.92 -0.20 -2.64 16 27 C -0.15 -1.24 5.56 -26.59 -0.15 -1.39 16 28 C 0.06 0.62 6.62 37.20 0.25 0.87 16 29 O -0.38 -4.39 9.06 -35.23 -0.32 -4.71 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.65 7.82 -51.93 -0.41 0.24 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.05 0.41 6.51 -51.93 -0.34 0.07 16 36 H 0.06 0.60 7.56 -51.93 -0.39 0.21 16 37 H 0.08 0.65 6.46 -51.93 -0.34 0.31 16 38 H 0.08 0.79 8.02 -51.93 -0.42 0.37 16 39 H 0.40 4.00 8.09 -40.82 -0.33 3.67 16 40 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.39 10.00 7.93 -40.82 -0.32 9.68 16 43 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.09 1.46 8.12 -51.93 -0.42 1.03 16 46 H 0.08 0.60 7.49 -51.93 -0.39 0.21 16 47 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.05 0.64 7.38 -51.93 -0.38 0.26 16 49 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 378.85 15.07 5.71 5.71 Total: -1.00 -31.21 378.85 -9.24 -40.44 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -8.62 Total: 11.32 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -1.22 Total: -7.79 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: 0.17 Total: -53.43 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -0.24 Total: -13.25 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.21 -9.24 -40.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020877662.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.707 kcal (2) G-P(sol) polarization free energy of solvation -31.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds