Wall clock time and date at job start Tue Mar 31 2020 10:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.53002 * 109.47233 * 240.00343 * 2 1 3 5 5 H 1.09007 * 109.47346 * 304.97548 * 4 2 1 6 6 C 1.53090 * 109.48036 * 184.94031 * 4 2 1 7 7 C 1.53175 * 109.16118 * 182.40643 * 6 4 2 8 8 H 1.08996 * 109.54503 * 176.85038 * 7 6 4 9 9 C 1.50700 * 109.62010 * 297.07059 * 7 6 4 10 10 O 1.21288 * 119.99545 * 359.59872 * 9 7 6 11 11 N 1.34774 * 120.00642 * 179.59882 * 9 7 6 12 12 C 1.46498 * 120.00479 * 179.97438 * 11 9 7 13 13 H 1.09002 * 112.84680 * 334.66821 * 12 11 9 14 14 C 1.53773 * 113.61506 * 105.86301 * 12 11 9 15 15 C 1.54047 * 86.98587 * 89.16509 * 14 12 11 16 16 H 1.09004 * 113.69202 * 270.87264 * 15 14 12 17 17 N 1.46502 * 113.62218 * 139.97916 * 15 14 12 18 18 C 1.36938 * 120.00003 * 107.50612 * 17 15 14 19 19 H 1.08003 * 119.99743 * 0.02562 * 18 17 15 20 20 C 1.38810 * 119.99886 * 180.02562 * 18 17 15 21 21 N 1.31615 * 119.99920 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99885 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47122 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47125 * 119.99846 * 22 20 18 25 25 H 1.48499 * 109.47513 * 239.99631 * 22 20 18 26 26 C 1.53775 * 113.61604 * 203.47637 * 12 11 9 27 27 C 1.53180 * 109.03710 * 56.97759 * 7 6 4 28 28 C 1.53088 * 109.16658 * 303.02018 * 27 7 6 29 29 O 1.42899 * 109.47925 * 64.99497 * 4 2 1 30 30 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 32 32 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 33 33 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 34 34 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 35 35 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 36 36 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 37 37 H 1.08991 * 109.52250 * 302.31250 * 6 4 2 38 38 H 1.09002 * 109.52270 * 62.50050 * 6 4 2 39 39 H 0.97001 * 119.99786 * 359.97438 * 11 9 7 40 40 H 1.09000 * 113.61908 * 203.66730 * 14 12 11 41 41 H 1.08998 * 113.61663 * 334.57348 * 14 12 11 42 42 H 0.97001 * 119.99802 * 287.50799 * 17 15 14 43 43 H 0.97001 * 119.99748 * 180.02562 * 21 20 18 44 44 H 1.09000 * 113.61730 * 25.42546 * 26 12 11 45 45 H 1.09003 * 113.61729 * 156.25187 * 26 12 11 46 46 H 1.08999 * 109.52428 * 183.11268 * 27 7 6 47 47 H 1.08999 * 109.57348 * 62.95988 * 27 7 6 48 48 H 1.09003 * 109.47862 * 297.62556 * 28 27 7 49 49 H 1.08994 * 109.49000 * 177.59196 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.6058 -1.7200 -1.2951 6 6 3.5659 -0.8298 -1.1889 7 6 4.0734 -1.4987 -2.4700 8 1 5.1629 -1.5288 -2.4587 9 6 3.5313 -2.9021 -2.5571 10 8 2.8149 -3.3311 -1.6774 11 7 3.8425 -3.6806 -3.6123 12 6 3.3160 -5.0451 -3.6966 13 1 3.0788 -5.4683 -2.7205 14 6 2.1879 -5.2074 -4.7289 15 6 3.2885 -5.5113 -5.7631 16 1 3.6735 -4.6244 -6.2664 17 7 2.9382 -6.5867 -6.6943 18 6 2.6364 -6.2928 -7.9973 19 1 2.6571 -5.2683 -8.3385 20 6 2.3040 -7.3117 -8.8795 21 7 2.2794 -8.5602 -8.4637 22 14 1.8917 -6.9108 -10.6567 23 1 1.9918 -5.4445 -10.8695 24 1 2.8468 -7.6072 -11.5557 25 1 0.5094 -7.3621 -10.9582 26 6 4.1585 -5.9768 -4.5836 27 6 3.5956 -0.6891 -3.6794 28 6 2.0686 -0.5858 -3.6436 29 8 1.6620 0.0167 -2.4132 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.1299 1.4426 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 3.9988 0.1666 -1.1021 38 1 3.8545 -1.4298 -0.3258 39 1 4.4152 -3.3374 -4.3160 40 1 1.5312 -6.0540 -4.5287 41 1 1.6423 -4.2851 -4.9282 42 1 2.9200 -7.5068 -6.3878 43 1 2.0474 -9.2722 -9.0802 44 1 5.2028 -5.6752 -4.6656 45 1 4.0407 -7.0334 -4.3427 46 1 3.9055 -1.1883 -4.5974 47 1 4.0292 0.3104 -3.6441 48 1 1.6350 -1.5829 -3.7209 49 1 1.7258 0.0254 -4.4784 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020877662.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:08 Heat of formation + Delta-G solvation = -90.350134 kcal Electronic energy + Delta-G solvation = -26888.382444 eV Core-core repulsion = 23235.722121 eV Total energy + Delta-G solvation = -3652.660323 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.86632 -40.31108 -38.90134 -36.21752 -35.76347 -34.81139 -33.83511 -31.76818 -30.94310 -28.03673 -27.04218 -26.54973 -26.17117 -24.61286 -24.08939 -23.06137 -21.05626 -20.59483 -20.38618 -19.13155 -17.87660 -17.43784 -17.17379 -16.79963 -16.66584 -16.15161 -15.86676 -15.74817 -15.48574 -15.14902 -15.08069 -14.61800 -14.26521 -14.21967 -13.77941 -13.52105 -13.46098 -13.34282 -13.23563 -13.08174 -12.85122 -12.82883 -12.58783 -12.54178 -12.31992 -12.11251 -11.85906 -11.81097 -11.76023 -11.63978 -11.47928 -11.26348 -11.20144 -10.86227 -10.71355 -10.17899 -9.99607 -8.99856 -7.95759 -5.24277 1.47534 1.48169 1.57904 1.60994 2.15706 2.55873 2.88247 3.36025 3.53644 3.67905 3.71092 3.78986 3.85885 3.94009 3.94865 4.02351 4.17731 4.23210 4.30608 4.31618 4.32539 4.46297 4.61811 4.71179 4.72073 4.77981 4.83417 4.88954 4.89291 4.90569 4.92934 4.97085 5.05329 5.07824 5.10612 5.12941 5.19611 5.21246 5.26067 5.29535 5.46290 5.50717 5.56656 5.71374 6.26433 6.34791 6.57831 7.27074 7.32617 8.09104 8.31206 9.27792 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.022903 B = 0.002777 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.263968 B =10081.001814 C =10468.387108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 C -0.137 4.137 4 C 0.084 3.916 5 H 0.049 0.951 6 C -0.126 4.126 7 C -0.107 4.107 8 H 0.132 0.868 9 C 0.513 3.487 10 O -0.576 6.576 11 N -0.697 5.697 12 C 0.135 3.865 13 H 0.086 0.914 14 C -0.173 4.173 15 C 0.156 3.844 16 H 0.085 0.915 17 N -0.728 5.728 18 C -0.241 4.241 19 H 0.080 0.920 20 C -0.078 4.078 21 N -0.971 5.971 22 Si 0.971 3.029 23 H -0.263 1.263 24 H -0.293 1.293 25 H -0.297 1.297 26 C -0.142 4.142 27 C -0.139 4.139 28 C 0.052 3.948 29 O -0.385 6.385 30 H 0.039 0.961 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.099 0.901 38 H 0.073 0.927 39 H 0.413 0.587 40 H 0.065 0.935 41 H 0.052 0.948 42 H 0.373 0.627 43 H 0.250 0.750 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.093 0.907 47 H 0.105 0.895 48 H 0.022 0.978 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.911 21.218 16.067 27.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 C -0.194 4.194 4 C 0.027 3.973 5 H 0.066 0.934 6 C -0.163 4.163 7 C -0.128 4.128 8 H 0.150 0.850 9 C 0.301 3.699 10 O -0.456 6.456 11 N -0.348 5.348 12 C 0.029 3.971 13 H 0.104 0.896 14 C -0.215 4.215 15 C 0.046 3.954 16 H 0.103 0.897 17 N -0.365 5.365 18 C -0.373 4.373 19 H 0.097 0.903 20 C -0.270 4.270 21 N -0.621 5.621 22 Si 0.801 3.199 23 H -0.187 1.187 24 H -0.221 1.221 25 H -0.225 1.225 26 C -0.182 4.182 27 C -0.177 4.177 28 C -0.025 4.025 29 O -0.304 6.304 30 H 0.058 0.942 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.117 0.883 38 H 0.091 0.909 39 H 0.250 0.750 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.205 0.795 43 H 0.059 0.941 44 H 0.107 0.893 45 H 0.103 0.897 46 H 0.111 0.889 47 H 0.123 0.877 48 H 0.041 0.959 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.289 21.191 16.511 27.379 hybrid contribution -0.355 -1.148 -1.328 1.791 sum 4.934 20.042 15.182 25.623 Atomic orbital electron populations 1.21765 0.95233 1.01011 1.02042 1.21173 0.96182 0.97650 0.95644 1.21735 1.01246 0.94539 1.01868 1.22326 0.94428 0.94681 0.85909 0.93350 1.22027 0.95888 1.01826 0.96595 1.21511 1.03598 0.89660 0.98023 0.85026 1.21239 0.79696 0.88239 0.80702 1.90650 1.38867 1.75525 1.40570 1.45645 1.51554 1.13275 1.24324 1.21452 0.94989 0.82774 0.97920 0.89626 1.24185 0.98247 1.00523 0.98577 1.21994 0.93635 0.91716 0.88062 0.89721 1.42618 1.81166 1.05337 1.07350 1.19741 1.36890 0.93265 0.87425 0.90256 1.25577 1.03642 0.95316 1.02450 1.69820 1.57101 0.99420 1.35792 0.85103 0.76689 0.77914 0.80244 1.18733 1.22063 1.22479 1.23655 0.99625 0.99560 0.95326 1.22193 0.95950 1.02333 0.97241 1.22653 0.94892 0.97584 0.87328 1.87863 1.79219 1.49554 1.13809 0.94157 0.91399 0.93007 0.89864 0.92075 0.91767 0.92795 0.88255 0.90861 0.74963 0.91623 0.92886 0.79458 0.94079 0.89334 0.89738 0.88877 0.87696 0.95946 0.87402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.09 71.98 0.65 -2.12 16 2 C -0.09 -1.63 2.76 -10.79 -0.03 -1.66 16 3 C -0.14 -2.02 8.75 71.98 0.63 -1.39 16 4 C 0.08 1.84 2.03 30.63 0.06 1.90 16 5 H 0.05 1.42 5.83 -2.38 -0.01 1.41 16 6 C -0.13 -2.15 4.36 30.68 0.13 -2.02 16 7 C -0.11 -1.69 3.04 -11.42 -0.03 -1.73 16 8 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 9 C 0.51 12.16 5.82 87.66 0.51 12.67 16 10 O -0.58 -18.43 13.49 -3.05 -0.04 -18.47 16 11 N -0.70 -15.50 5.14 -440.06 -2.26 -17.76 16 12 C 0.14 3.83 4.29 45.51 0.20 4.02 16 13 H 0.09 2.65 7.50 -2.39 -0.02 2.63 16 14 C -0.17 -5.99 7.70 31.21 0.24 -5.74 16 15 C 0.16 5.67 4.37 45.61 0.20 5.87 16 16 H 0.08 2.88 8.10 -2.39 -0.02 2.86 16 17 N -0.73 -35.51 5.40 -320.00 -1.73 -37.24 16 18 C -0.24 -13.03 9.97 84.03 0.84 -12.19 16 19 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 20 C -0.08 -4.40 5.50 84.86 0.47 -3.94 16 21 N -0.97 -59.01 13.06 21.65 0.28 -58.73 16 22 Si 0.97 45.43 29.55 68.60 2.03 47.46 16 23 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 24 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 25 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 26 C -0.14 -4.16 7.57 31.12 0.24 -3.92 16 27 C -0.14 -1.92 5.56 30.68 0.17 -1.75 16 28 C 0.05 1.04 6.62 72.01 0.48 1.52 16 29 O -0.39 -8.70 9.06 -148.98 -1.35 -10.05 16 30 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.05 1.09 7.82 -2.39 -0.02 1.07 16 33 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.06 0.80 6.51 -2.39 -0.02 0.79 16 36 H 0.05 0.91 7.56 -2.39 -0.02 0.90 16 37 H 0.10 1.30 6.46 -2.39 -0.02 1.28 16 38 H 0.07 1.35 8.02 -2.39 -0.02 1.33 16 39 H 0.41 6.95 8.09 -92.71 -0.75 6.20 16 40 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.37 19.80 7.93 -92.71 -0.73 19.06 16 43 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 44 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.08 2.64 8.12 -2.39 -0.02 2.62 16 46 H 0.09 1.05 7.49 -2.39 -0.02 1.03 16 47 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.02 0.56 7.38 -2.39 -0.02 0.55 16 49 H 0.11 1.82 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -69.00 378.85 1.13 -67.87 By element: Atomic # 1 Polarization: 37.94 SS G_CDS: -0.54 Total: 37.39 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: 4.75 Total: -10.47 kcal Atomic # 7 Polarization: -110.03 SS G_CDS: -3.71 Total: -113.74 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -1.39 Total: -28.52 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -69.00 1.13 -67.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020877662.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.476 kcal (2) G-P(sol) polarization free energy of solvation -69.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds