Wall clock time and date at job start Tue Mar 31 2020 10:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47015 * 2 1 4 4 C 1.53002 * 109.46828 * 119.99580 * 2 1 3 5 5 H 1.08993 * 109.49165 * 300.02520 * 4 2 1 6 6 C 1.53096 * 109.47810 * 179.97438 * 4 2 1 7 7 C 1.53173 * 109.16177 * 182.40899 * 6 4 2 8 8 H 1.08999 * 109.54116 * 176.84420 * 7 6 4 9 9 C 1.50697 * 109.54403 * 297.11476 * 7 6 4 10 10 O 1.21278 * 120.00254 * 0.02562 * 9 7 6 11 11 N 1.34787 * 119.99678 * 179.97438 * 9 7 6 12 12 C 1.46504 * 119.99456 * 180.02562 * 11 9 7 13 13 H 1.08993 * 112.84888 * 23.80346 * 12 11 9 14 14 C 1.53776 * 113.60888 * 155.00165 * 12 11 9 15 15 C 1.53781 * 87.08127 * 139.97962 * 14 12 11 16 16 H 1.08997 * 113.61739 * 89.20061 * 15 14 12 17 17 N 1.46502 * 113.61737 * 220.01687 * 15 14 12 18 18 C 1.36928 * 120.00338 * 204.99970 * 17 15 14 19 19 H 1.08002 * 120.00232 * 359.97438 * 18 17 15 20 20 C 1.38814 * 120.00491 * 180.02562 * 18 17 15 21 21 N 1.31624 * 119.99349 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00494 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46784 * 90.00027 * 22 20 18 24 24 H 1.48495 * 109.47197 * 210.00172 * 22 20 18 25 25 H 1.48498 * 109.47065 * 330.00508 * 22 20 18 26 26 C 1.53784 * 87.08185 * 334.56503 * 15 14 12 27 27 C 1.53181 * 109.03676 * 56.98730 * 7 6 4 28 28 C 1.53100 * 109.15732 * 303.01504 * 27 7 6 29 29 O 1.42899 * 109.41499 * 57.61360 * 28 27 7 30 30 H 1.09008 * 109.46972 * 300.00554 * 1 2 3 31 31 H 1.09001 * 109.47113 * 60.00220 * 1 2 3 32 32 H 1.08998 * 109.47248 * 180.02562 * 1 2 3 33 33 H 1.08991 * 109.46712 * 239.99635 * 2 1 3 34 34 H 1.09001 * 109.47001 * 299.99849 * 3 2 1 35 35 H 1.09000 * 109.47857 * 59.99611 * 3 2 1 36 36 H 1.09001 * 109.46888 * 180.02562 * 3 2 1 37 37 H 1.08998 * 109.52422 * 302.31997 * 6 4 2 38 38 H 1.09003 * 109.51754 * 62.44233 * 6 4 2 39 39 H 0.96996 * 119.99938 * 0.02562 * 11 9 7 40 40 H 1.09005 * 113.61832 * 254.52661 * 14 12 11 41 41 H 1.09001 * 113.61964 * 25.43158 * 14 12 11 42 42 H 0.97001 * 119.99720 * 24.99778 * 17 15 14 43 43 H 0.97006 * 119.99409 * 179.97438 * 21 20 18 44 44 H 1.09001 * 113.61388 * 270.88789 * 26 15 14 45 45 H 1.08995 * 113.61661 * 139.97765 * 26 15 14 46 46 H 1.08988 * 109.52544 * 62.91818 * 27 7 6 47 47 H 1.08996 * 109.52230 * 183.04989 * 27 7 6 48 48 H 1.08996 * 109.47674 * 177.59246 * 28 27 7 49 49 H 1.09003 * 109.48101 * 297.61458 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6765 -0.2078 2.1394 6 6 3.5710 -0.7219 1.2492 7 6 4.0735 -1.4973 2.4709 8 1 5.1619 -1.5497 2.4470 9 6 3.6279 -0.7987 3.7296 10 8 2.9724 0.2192 3.6587 11 7 3.9571 -1.3058 4.9343 12 6 3.5235 -0.6269 6.1580 13 1 2.6411 -0.0052 6.0071 14 6 3.4187 -1.5600 7.3759 15 6 4.0209 -0.4144 8.2065 16 1 3.2751 0.2657 8.6177 17 7 4.9943 -0.8626 9.2055 18 6 5.2281 -0.1047 10.3217 19 1 4.6953 0.8236 10.4655 20 6 6.1508 -0.5291 11.2680 21 7 6.8013 -1.6597 11.0921 22 14 6.4703 0.5051 12.7904 23 1 5.5420 0.0918 13.8733 24 1 7.8723 0.3072 13.2380 25 1 6.2505 1.9384 12.4703 26 6 4.6633 0.0881 6.9027 27 6 3.4916 -2.9139 2.4375 28 6 1.9637 -2.8285 2.3917 29 8 1.5644 -2.0688 1.2491 30 1 -0.3633 0.5140 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 3.1300 1.4424 -0.0005 37 1 3.9350 -1.1995 0.3396 38 1 3.9356 0.3044 1.2928 39 1 4.4811 -2.1201 4.9910 40 1 2.3930 -1.8060 7.6506 41 1 4.0625 -2.4372 7.3106 42 1 5.4731 -1.6962 9.0762 43 1 7.4463 -1.9561 11.7532 44 1 5.6473 -0.3386 6.7080 45 1 4.6422 1.1725 6.7953 46 1 3.8539 -3.4357 1.5519 47 1 3.8004 -3.4557 3.3315 48 1 1.5454 -3.8328 2.3247 49 1 1.5994 -2.3427 3.2969 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022932799.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:12 Heat of formation + Delta-G solvation = -72.421036 kcal Electronic energy + Delta-G solvation = -26609.135541 eV Core-core repulsion = 22957.252681 eV Total energy + Delta-G solvation = -3651.882859 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.89116 -39.07920 -37.72185 -35.59916 -34.18524 -33.86956 -32.57317 -30.27305 -29.86150 -27.39417 -25.88002 -25.16391 -24.46678 -23.83698 -22.81735 -21.28210 -20.37292 -20.00396 -18.99732 -17.19631 -16.79595 -16.67431 -16.41782 -16.17781 -15.19268 -14.80965 -14.65474 -14.46570 -14.32785 -14.04425 -13.80677 -13.49551 -13.10207 -13.06756 -12.87432 -12.55948 -12.39605 -12.23215 -12.10237 -11.95601 -11.72689 -11.42880 -11.31053 -11.29150 -11.00969 -10.95429 -10.73250 -10.68589 -10.52292 -10.38491 -10.33426 -10.07925 -9.79150 -9.64054 -9.29354 -8.93986 -8.76876 -7.02062 -5.83478 -3.12362 2.61217 3.23069 3.40295 3.45990 3.47375 3.59485 4.31772 4.47277 4.53623 4.56078 4.65896 4.78270 4.89191 4.94042 5.03301 5.14206 5.17349 5.19438 5.29747 5.35032 5.40675 5.44012 5.48401 5.49283 5.54435 5.65114 5.68996 5.73618 5.77230 5.81543 5.83866 5.89608 5.95171 6.00168 6.09323 6.17558 6.20981 6.23548 6.27096 6.48066 6.57244 6.71795 7.02270 7.13875 7.58835 7.65785 8.25688 8.35039 9.46451 10.02793 10.37351 11.38910 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.030194 B = 0.002466 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.111411 B =11353.813525 C =11702.502060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 C -0.147 4.147 4 C 0.084 3.916 5 H 0.086 0.914 6 C -0.129 4.129 7 C -0.115 4.115 8 H 0.100 0.900 9 C 0.514 3.486 10 O -0.540 6.540 11 N -0.712 5.712 12 C 0.117 3.883 13 H 0.108 0.892 14 C -0.159 4.159 15 C 0.169 3.831 16 H 0.079 0.921 17 N -0.710 5.710 18 C -0.244 4.244 19 H 0.072 0.928 20 C -0.013 4.013 21 N -0.933 5.933 22 Si 0.908 3.092 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C -0.176 4.176 27 C -0.146 4.146 28 C 0.061 3.939 29 O -0.380 6.380 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.399 0.601 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.079 0.921 45 H 0.058 0.942 46 H 0.082 0.918 47 H 0.078 0.922 48 H 0.095 0.905 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.736 -1.885 -23.324 24.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.104 4.104 3 C -0.204 4.204 4 C 0.027 3.973 5 H 0.104 0.896 6 C -0.166 4.166 7 C -0.136 4.136 8 H 0.118 0.882 9 C 0.301 3.699 10 O -0.418 6.418 11 N -0.362 5.362 12 C 0.012 3.988 13 H 0.126 0.874 14 C -0.199 4.199 15 C 0.056 3.944 16 H 0.097 0.903 17 N -0.348 5.348 18 C -0.375 4.375 19 H 0.090 0.910 20 C -0.209 4.209 21 N -0.581 5.581 22 Si 0.739 3.261 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.207 1.207 26 C -0.218 4.218 27 C -0.184 4.184 28 C -0.016 4.016 29 O -0.299 6.299 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.233 0.767 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.097 0.903 45 H 0.077 0.923 46 H 0.101 0.899 47 H 0.097 0.903 48 H 0.113 0.887 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.298 -1.097 -23.325 25.134 hybrid contribution 1.092 -0.157 1.106 1.562 sum -8.206 -1.254 -22.218 23.719 Atomic orbital electron populations 1.21761 0.94771 1.02193 1.01319 1.21057 0.96456 0.95736 0.97119 1.21850 1.01246 0.95195 1.02091 1.22443 0.92387 0.82821 0.99628 0.89588 1.22042 0.97134 1.01260 0.96213 1.21454 1.02268 0.96140 0.93774 0.88156 1.20562 0.79538 0.84839 0.84997 1.90637 1.39361 1.24697 1.87098 1.46100 1.55424 1.28992 1.05678 1.22493 0.99051 0.95819 0.81395 0.87384 1.23862 1.01479 0.99115 0.95412 1.21348 0.91873 0.93729 0.87437 0.90253 1.42352 1.45539 1.25831 1.21072 1.19312 1.18506 1.02513 0.97215 0.90994 1.24771 0.99426 0.97554 0.99141 1.69661 1.29799 1.22154 1.36496 0.86171 0.77202 0.79550 0.83171 1.21637 1.21747 1.20683 1.24325 0.98221 0.99985 0.99269 1.22193 0.97354 0.95148 1.03755 1.22521 0.93345 0.96491 0.89273 1.87866 1.74776 1.23900 1.43397 0.92815 0.93013 0.92010 0.91014 0.92488 0.92102 0.92340 0.90804 0.89883 0.76709 0.91541 0.90008 0.78109 0.93442 0.90261 0.92301 0.89910 0.90317 0.88715 0.93226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.05 37.16 0.34 -0.98 16 2 C -0.09 -0.81 2.72 -90.62 -0.25 -1.06 16 3 C -0.15 -1.28 8.84 37.16 0.33 -0.96 16 4 C 0.08 0.93 1.93 -26.68 -0.05 0.88 16 5 H 0.09 1.17 5.80 -51.93 -0.30 0.87 16 6 C -0.13 -1.27 4.13 -26.59 -0.11 -1.38 16 7 C -0.11 -1.10 3.04 -91.59 -0.28 -1.38 16 8 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 9 C 0.51 6.49 5.82 -10.98 -0.06 6.43 16 10 O -0.54 -8.55 13.44 5.56 0.07 -8.47 16 11 N -0.71 -8.63 5.24 -53.02 -0.28 -8.91 16 12 C 0.12 1.69 4.24 -67.12 -0.28 1.41 16 13 H 0.11 1.66 7.46 -51.93 -0.39 1.27 16 14 C -0.16 -2.42 7.58 -25.92 -0.20 -2.62 16 15 C 0.17 3.23 4.48 -67.12 -0.30 2.93 16 16 H 0.08 1.52 8.10 -51.93 -0.42 1.10 16 17 N -0.71 -17.29 5.40 -52.64 -0.28 -17.58 16 18 C -0.24 -6.68 9.97 -15.06 -0.15 -6.83 16 19 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -27.69 13.06 55.49 0.72 -26.96 16 22 Si 0.91 22.14 29.55 -169.99 -5.02 17.11 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 C -0.18 -3.02 7.68 -25.91 -0.20 -3.22 16 27 C -0.15 -1.18 5.57 -26.59 -0.15 -1.33 16 28 C 0.06 0.58 6.62 37.21 0.25 0.83 16 29 O -0.38 -4.31 9.73 -35.23 -0.34 -4.66 16 30 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.60 7.68 -51.93 -0.40 0.20 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.49 6.49 -51.93 -0.34 0.16 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.87 6.46 -51.93 -0.34 0.53 16 39 H 0.40 3.99 8.14 -40.82 -0.33 3.66 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.08 1.23 8.09 -51.93 -0.42 0.81 16 42 H 0.38 9.87 7.92 -40.82 -0.32 9.55 16 43 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.08 0.59 8.14 -51.94 -0.42 0.17 16 47 H 0.08 0.53 7.52 -51.93 -0.39 0.14 16 48 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.05 0.55 7.38 -51.93 -0.38 0.17 16 LS Contribution 379.81 15.07 5.72 5.72 Total: -1.00 -31.16 379.81 -9.27 -40.43 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -8.65 Total: 11.04 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: -1.21 Total: -7.73 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: 0.16 Total: -53.45 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -0.27 Total: -13.13 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.16 -9.27 -40.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022932799.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.994 kcal (2) G-P(sol) polarization free energy of solvation -31.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds