Wall clock time and date at job start Tue Mar 31 2020 10:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47015 * 2 1 4 4 C 1.53002 * 109.46828 * 119.99580 * 2 1 3 5 5 H 1.08993 * 109.49165 * 300.02520 * 4 2 1 6 6 C 1.53096 * 109.47810 * 179.97438 * 4 2 1 7 7 C 1.53173 * 109.16177 * 182.40899 * 6 4 2 8 8 H 1.08999 * 109.54116 * 176.84420 * 7 6 4 9 9 C 1.50697 * 109.54403 * 297.11476 * 7 6 4 10 10 O 1.21278 * 120.00254 * 0.02562 * 9 7 6 11 11 N 1.34787 * 119.99678 * 179.97438 * 9 7 6 12 12 C 1.46504 * 119.99456 * 180.02562 * 11 9 7 13 13 H 1.08993 * 112.84888 * 23.80346 * 12 11 9 14 14 C 1.53776 * 113.60888 * 155.00165 * 12 11 9 15 15 C 1.53781 * 87.08127 * 139.97962 * 14 12 11 16 16 H 1.08997 * 113.61739 * 89.20061 * 15 14 12 17 17 N 1.46502 * 113.61737 * 220.01687 * 15 14 12 18 18 C 1.36928 * 120.00338 * 204.99970 * 17 15 14 19 19 H 1.08002 * 120.00232 * 359.97438 * 18 17 15 20 20 C 1.38814 * 120.00491 * 180.02562 * 18 17 15 21 21 N 1.31624 * 119.99349 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00494 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46784 * 90.00027 * 22 20 18 24 24 H 1.48495 * 109.47197 * 210.00172 * 22 20 18 25 25 H 1.48498 * 109.47065 * 330.00508 * 22 20 18 26 26 C 1.53784 * 87.08185 * 334.56503 * 15 14 12 27 27 C 1.53181 * 109.03676 * 56.98730 * 7 6 4 28 28 C 1.53100 * 109.15732 * 303.01504 * 27 7 6 29 29 O 1.42899 * 109.41499 * 57.61360 * 28 27 7 30 30 H 1.09008 * 109.46972 * 300.00554 * 1 2 3 31 31 H 1.09001 * 109.47113 * 60.00220 * 1 2 3 32 32 H 1.08998 * 109.47248 * 180.02562 * 1 2 3 33 33 H 1.08991 * 109.46712 * 239.99635 * 2 1 3 34 34 H 1.09001 * 109.47001 * 299.99849 * 3 2 1 35 35 H 1.09000 * 109.47857 * 59.99611 * 3 2 1 36 36 H 1.09001 * 109.46888 * 180.02562 * 3 2 1 37 37 H 1.08998 * 109.52422 * 302.31997 * 6 4 2 38 38 H 1.09003 * 109.51754 * 62.44233 * 6 4 2 39 39 H 0.96996 * 119.99938 * 0.02562 * 11 9 7 40 40 H 1.09005 * 113.61832 * 254.52661 * 14 12 11 41 41 H 1.09001 * 113.61964 * 25.43158 * 14 12 11 42 42 H 0.97001 * 119.99720 * 24.99778 * 17 15 14 43 43 H 0.97006 * 119.99409 * 179.97438 * 21 20 18 44 44 H 1.09001 * 113.61388 * 270.88789 * 26 15 14 45 45 H 1.08995 * 113.61661 * 139.97765 * 26 15 14 46 46 H 1.08988 * 109.52544 * 62.91818 * 27 7 6 47 47 H 1.08996 * 109.52230 * 183.04989 * 27 7 6 48 48 H 1.08996 * 109.47674 * 177.59246 * 28 27 7 49 49 H 1.09003 * 109.48101 * 297.61458 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6765 -0.2078 2.1394 6 6 3.5710 -0.7219 1.2492 7 6 4.0735 -1.4973 2.4709 8 1 5.1619 -1.5497 2.4470 9 6 3.6279 -0.7987 3.7296 10 8 2.9724 0.2192 3.6587 11 7 3.9571 -1.3058 4.9343 12 6 3.5235 -0.6269 6.1580 13 1 2.6411 -0.0052 6.0071 14 6 3.4187 -1.5600 7.3759 15 6 4.0209 -0.4144 8.2065 16 1 3.2751 0.2657 8.6177 17 7 4.9943 -0.8626 9.2055 18 6 5.2281 -0.1047 10.3217 19 1 4.6953 0.8236 10.4655 20 6 6.1508 -0.5291 11.2680 21 7 6.8013 -1.6597 11.0921 22 14 6.4703 0.5051 12.7904 23 1 5.5420 0.0918 13.8733 24 1 7.8723 0.3072 13.2380 25 1 6.2505 1.9384 12.4703 26 6 4.6633 0.0881 6.9027 27 6 3.4916 -2.9139 2.4375 28 6 1.9637 -2.8285 2.3917 29 8 1.5644 -2.0688 1.2491 30 1 -0.3633 0.5140 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 3.1300 1.4424 -0.0005 37 1 3.9350 -1.1995 0.3396 38 1 3.9356 0.3044 1.2928 39 1 4.4811 -2.1201 4.9910 40 1 2.3930 -1.8060 7.6506 41 1 4.0625 -2.4372 7.3106 42 1 5.4731 -1.6962 9.0762 43 1 7.4463 -1.9561 11.7532 44 1 5.6473 -0.3386 6.7080 45 1 4.6422 1.1725 6.7953 46 1 3.8539 -3.4357 1.5519 47 1 3.8004 -3.4557 3.3315 48 1 1.5454 -3.8328 2.3247 49 1 1.5994 -2.3427 3.2969 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022932799.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:11 Heat of formation + Delta-G solvation = -92.511047 kcal Electronic energy + Delta-G solvation = -26610.006709 eV Core-core repulsion = 22957.252681 eV Total energy + Delta-G solvation = -3652.754028 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.82156 -40.23204 -38.89411 -36.35753 -35.77124 -34.87275 -33.96530 -31.78190 -30.97011 -28.13658 -26.93734 -26.54831 -26.04096 -24.68118 -24.05453 -22.46705 -21.19413 -21.12242 -20.25484 -19.13262 -17.78934 -17.56753 -17.39099 -17.17770 -16.41629 -16.19405 -15.97153 -15.56870 -15.29221 -15.06552 -14.94512 -14.59939 -14.53695 -14.20188 -13.80828 -13.48361 -13.39310 -13.30286 -13.18542 -13.15135 -12.93311 -12.82888 -12.46315 -12.23640 -12.18951 -12.15019 -12.07163 -12.02693 -11.75801 -11.74557 -11.53074 -11.44251 -11.23386 -10.88290 -10.66346 -10.20006 -9.93830 -8.99709 -7.96599 -5.24459 1.47463 1.48165 1.56680 1.62162 2.21899 2.56274 2.83569 3.35133 3.53926 3.65311 3.73493 3.79285 3.85680 3.92427 3.95604 4.02598 4.16314 4.20357 4.27422 4.30288 4.40570 4.44125 4.55095 4.71743 4.72153 4.77712 4.78813 4.83797 4.87119 4.88850 4.90771 5.00307 5.00734 5.04612 5.12655 5.12698 5.14379 5.20292 5.25871 5.38801 5.44039 5.47448 5.51128 5.68248 6.26015 6.34551 6.59796 7.27578 7.32699 8.08089 8.31750 9.26432 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.030194 B = 0.002466 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.111411 B =11353.813525 C =11702.502060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.085 4.085 3 C -0.143 4.143 4 C 0.085 3.915 5 H 0.055 0.945 6 C -0.127 4.127 7 C -0.111 4.111 8 H 0.123 0.877 9 C 0.512 3.488 10 O -0.575 6.575 11 N -0.705 5.705 12 C 0.138 3.862 13 H 0.102 0.898 14 C -0.139 4.139 15 C 0.149 3.851 16 H 0.076 0.924 17 N -0.723 5.723 18 C -0.245 4.245 19 H 0.075 0.925 20 C -0.074 4.074 21 N -0.968 5.968 22 Si 0.971 3.029 23 H -0.286 1.286 24 H -0.295 1.295 25 H -0.272 1.272 26 C -0.169 4.169 27 C -0.140 4.140 28 C 0.054 3.946 29 O -0.391 6.391 30 H 0.041 0.959 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.042 0.958 36 H 0.061 0.939 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.412 0.588 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.376 0.624 43 H 0.251 0.749 44 H 0.071 0.929 45 H 0.050 0.950 46 H 0.101 0.899 47 H 0.095 0.905 48 H 0.113 0.887 49 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.722 -2.488 -24.876 26.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.104 4.104 3 C -0.200 4.200 4 C 0.028 3.972 5 H 0.072 0.928 6 C -0.165 4.165 7 C -0.132 4.132 8 H 0.141 0.859 9 C 0.300 3.700 10 O -0.455 6.455 11 N -0.355 5.355 12 C 0.032 3.968 13 H 0.120 0.880 14 C -0.179 4.179 15 C 0.039 3.961 16 H 0.094 0.906 17 N -0.361 5.361 18 C -0.377 4.377 19 H 0.092 0.908 20 C -0.266 4.266 21 N -0.618 5.618 22 Si 0.800 3.200 23 H -0.213 1.213 24 H -0.222 1.222 25 H -0.197 1.197 26 C -0.211 4.211 27 C -0.177 4.177 28 C -0.023 4.023 29 O -0.311 6.311 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.111 0.889 38 H 0.092 0.908 39 H 0.249 0.751 40 H 0.099 0.901 41 H 0.107 0.893 42 H 0.208 0.792 43 H 0.060 0.940 44 H 0.090 0.910 45 H 0.069 0.931 46 H 0.119 0.881 47 H 0.114 0.886 48 H 0.131 0.869 49 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -9.313 -1.696 -24.916 26.654 hybrid contribution 1.003 0.067 1.523 1.825 sum -8.310 -1.629 -23.393 24.879 Atomic orbital electron populations 1.21736 0.94808 1.01761 1.01489 1.21094 0.96484 0.96001 0.96815 1.21821 1.01441 0.94782 1.01968 1.22360 0.93271 0.82631 0.98924 0.92761 1.22038 0.96174 1.01133 0.97185 1.21517 1.03570 0.96576 0.91562 0.85907 1.21181 0.78632 0.84400 0.85825 1.90638 1.40820 1.26421 1.87598 1.45959 1.55451 1.29279 1.04849 1.22070 0.97436 0.95083 0.82227 0.87993 1.23658 1.02003 0.98044 0.94157 1.21666 0.91442 0.95829 0.87199 0.90587 1.42485 1.46683 1.25368 1.21527 1.19679 1.17617 1.02548 0.97867 0.90752 1.25532 1.00006 0.98944 1.02166 1.69800 1.30783 1.23818 1.37405 0.85181 0.76548 0.78487 0.79806 1.21339 1.22209 1.19691 1.24149 0.98683 0.99698 0.98576 1.22198 0.95807 0.94241 1.05484 1.22679 0.94802 0.96827 0.87968 1.87853 1.75296 1.23947 1.43968 0.94024 0.91446 0.92703 0.90008 0.90937 0.93834 0.91992 0.88907 0.90755 0.75132 0.90149 0.89279 0.79159 0.93984 0.90996 0.93088 0.88075 0.88635 0.86933 0.95289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.05 71.98 0.65 -1.87 16 2 C -0.09 -1.55 2.72 -10.79 -0.03 -1.57 16 3 C -0.14 -2.40 8.84 71.98 0.64 -1.76 16 4 C 0.09 1.83 1.93 30.63 0.06 1.89 16 5 H 0.05 1.52 5.80 -2.39 -0.01 1.51 16 6 C -0.13 -2.29 4.13 30.68 0.13 -2.17 16 7 C -0.11 -1.86 3.04 -11.42 -0.03 -1.89 16 8 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 9 C 0.51 12.28 5.82 87.65 0.51 12.79 16 10 O -0.57 -18.20 13.44 -3.02 -0.04 -18.24 16 11 N -0.70 -15.88 5.24 -440.03 -2.30 -18.19 16 12 C 0.14 3.84 4.24 45.52 0.19 4.03 16 13 H 0.10 3.06 7.46 -2.39 -0.02 3.04 16 14 C -0.14 -4.05 7.58 31.12 0.24 -3.81 16 15 C 0.15 5.66 4.48 45.52 0.20 5.86 16 16 H 0.08 2.91 8.10 -2.39 -0.02 2.89 16 17 N -0.72 -35.35 5.40 -320.44 -1.73 -37.09 16 18 C -0.25 -13.44 9.97 84.04 0.84 -12.61 16 19 H 0.07 3.95 7.83 -2.91 -0.02 3.92 16 20 C -0.07 -4.20 5.50 84.86 0.47 -3.74 16 21 N -0.97 -58.10 13.06 21.65 0.28 -57.82 16 22 Si 0.97 45.75 29.55 68.60 2.03 47.78 16 23 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 24 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 25 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 26 C -0.17 -5.74 7.68 31.12 0.24 -5.50 16 27 C -0.14 -1.82 5.57 30.69 0.17 -1.65 16 28 C 0.05 0.94 6.62 72.02 0.48 1.42 16 29 O -0.39 -8.41 9.73 -148.98 -1.45 -9.86 16 30 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.05 1.05 7.68 -2.39 -0.02 1.03 16 33 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.06 0.98 6.49 -2.39 -0.02 0.97 16 37 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.07 1.47 6.46 -2.39 -0.02 1.45 16 39 H 0.41 7.20 8.14 -92.71 -0.76 6.44 16 40 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 41 H 0.09 2.51 8.09 -2.39 -0.02 2.49 16 42 H 0.38 19.45 7.92 -92.71 -0.73 18.72 16 43 H 0.25 14.66 8.31 -92.70 -0.77 13.89 16 44 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 45 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.10 0.95 7.52 -2.39 -0.02 0.93 16 48 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 49 H 0.03 0.62 7.38 -2.39 -0.02 0.60 16 Total: -1.00 -67.78 379.81 0.98 -66.80 By element: Atomic # 1 Polarization: 37.75 SS G_CDS: -0.55 Total: 37.20 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: 4.74 Total: -10.59 kcal Atomic # 7 Polarization: -109.34 SS G_CDS: -3.75 Total: -113.09 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -1.49 Total: -28.10 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -67.78 0.98 -66.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022932799.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.709 kcal (2) G-P(sol) polarization free energy of solvation -67.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds