Wall clock time and date at job start Tue Mar 31 2020 10:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47298 * 2 1 4 4 C 1.52999 * 109.46899 * 120.00574 * 2 1 3 5 5 H 1.08995 * 109.48805 * 300.02719 * 4 2 1 6 6 C 1.53095 * 109.47989 * 179.97438 * 4 2 1 7 7 C 1.53176 * 109.16286 * 182.40803 * 6 4 2 8 8 H 1.08999 * 109.54211 * 297.02393 * 7 6 4 9 9 C 1.50705 * 109.54206 * 176.84452 * 7 6 4 10 10 O 1.21284 * 119.99918 * 0.02562 * 9 7 6 11 11 N 1.34773 * 119.99993 * 179.97438 * 9 7 6 12 12 C 1.46495 * 120.00128 * 180.02562 * 11 9 7 13 13 H 1.09003 * 112.84590 * 334.66365 * 12 11 9 14 14 C 1.53779 * 113.62089 * 105.86023 * 12 11 9 15 15 C 1.54048 * 86.98638 * 89.15958 * 14 12 11 16 16 H 1.09001 * 113.69732 * 139.99113 * 15 14 12 17 17 N 1.46498 * 113.61761 * 270.88952 * 15 14 12 18 18 C 1.36933 * 120.00222 * 252.49311 * 17 15 14 19 19 H 1.08008 * 119.99820 * 359.97438 * 18 17 15 20 20 C 1.38808 * 120.00549 * 179.97438 * 18 17 15 21 21 N 1.31621 * 119.99919 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00313 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46955 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47064 * 120.00245 * 22 20 18 25 25 H 1.48500 * 109.47065 * 240.00422 * 22 20 18 26 26 C 1.53786 * 87.07767 * 25.43649 * 15 14 12 27 27 C 1.53181 * 109.03560 * 56.98068 * 7 6 4 28 28 C 1.53095 * 109.15940 * 303.01673 * 27 7 6 29 29 O 1.42895 * 109.41568 * 57.61417 * 28 27 7 30 30 H 1.08999 * 109.47221 * 300.00152 * 1 2 3 31 31 H 1.09004 * 109.47163 * 59.99502 * 1 2 3 32 32 H 1.09000 * 109.47465 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46977 * 240.00314 * 2 1 3 34 34 H 1.09001 * 109.46850 * 60.00236 * 3 2 1 35 35 H 1.08997 * 109.47241 * 179.97438 * 3 2 1 36 36 H 1.08994 * 109.47401 * 300.00324 * 3 2 1 37 37 H 1.09001 * 109.52293 * 62.49555 * 6 4 2 38 38 H 1.09007 * 109.52035 * 302.31323 * 6 4 2 39 39 H 0.97001 * 120.00010 * 359.97438 * 11 9 7 40 40 H 1.08997 * 113.61672 * 203.66606 * 14 12 11 41 41 H 1.09011 * 113.60990 * 334.57037 * 14 12 11 42 42 H 0.96998 * 120.00353 * 72.48782 * 17 15 14 43 43 H 0.96999 * 120.00349 * 179.97438 * 21 20 18 44 44 H 1.09001 * 113.61403 * 220.02455 * 26 15 14 45 45 H 1.08994 * 113.61675 * 89.11819 * 26 15 14 46 46 H 1.08994 * 109.52035 * 62.92686 * 27 7 6 47 47 H 1.09002 * 109.51551 * 183.11378 * 27 7 6 48 48 H 1.09010 * 109.47455 * 177.59523 * 28 27 7 49 49 H 1.09000 * 109.48076 * 297.62503 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 1.2492 5 1 1.6764 -0.2082 2.1393 6 6 3.5709 -0.7221 1.2491 7 6 4.0734 -1.4977 2.4707 8 1 3.7525 -0.9917 3.3812 9 6 5.5783 -1.5701 2.4377 10 8 6.1906 -1.0524 1.5277 11 7 6.2439 -2.2093 3.4200 12 6 7.7068 -2.2792 3.3883 13 1 8.1129 -2.1939 2.3803 14 6 8.3902 -1.3531 4.4081 15 6 8.3028 -2.5227 5.4068 16 1 9.1902 -2.6342 6.0297 17 7 7.0588 -2.5423 6.1803 18 6 7.0718 -2.2025 7.5067 19 1 7.9993 -1.9204 7.9828 20 6 5.8930 -2.2205 8.2395 21 7 4.7628 -2.5647 7.6595 22 14 5.9110 -1.7576 10.0492 23 1 7.2963 -1.4131 10.4582 24 1 5.0246 -0.5867 10.2694 25 1 5.4263 -2.9046 10.8583 26 6 8.2847 -3.4594 4.1872 27 6 3.4914 -2.9142 2.4371 28 6 1.9635 -2.8288 2.3914 29 8 1.5643 -2.0689 1.2489 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6767 1.9562 0.8900 35 1 3.1300 1.4424 0.0005 36 1 1.6767 1.9563 -0.8899 37 1 3.9356 0.3041 1.2938 38 1 3.9349 -1.1997 0.3393 39 1 5.7543 -2.6224 4.1484 40 1 9.4116 -1.0847 4.1384 41 1 7.7851 -0.4910 4.6891 42 1 6.2258 -2.7959 5.7528 43 1 3.9391 -2.5777 8.1716 44 1 7.5944 -4.2967 4.2900 45 1 9.2772 -3.7658 3.8573 46 1 3.8538 -3.4360 1.5515 47 1 3.7994 -3.4557 3.3316 48 1 1.5452 -3.8332 2.3243 49 1 1.5994 -2.3429 3.2966 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022932801.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:19 Heat of formation + Delta-G solvation = -70.544171 kcal Electronic energy + Delta-G solvation = -27086.878409 eV Core-core repulsion = 23435.076937 eV Total energy + Delta-G solvation = -3651.801472 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.39146 -39.26040 -37.78551 -35.48123 -33.73078 -33.63515 -32.38792 -30.09985 -29.92537 -27.35102 -25.89247 -25.14825 -24.42300 -23.69288 -22.66669 -21.11374 -20.24549 -19.69581 -18.85196 -17.46441 -16.83716 -16.44632 -15.97533 -15.52996 -15.04981 -14.80982 -14.54241 -14.35068 -14.24269 -13.89157 -13.66673 -13.63212 -13.18409 -13.02044 -12.83539 -12.60901 -12.27520 -12.07725 -11.99422 -11.70255 -11.49968 -11.40248 -11.23293 -11.08308 -10.96156 -10.89919 -10.84144 -10.51846 -10.26843 -10.22968 -10.19196 -9.92176 -9.72570 -9.62335 -9.22088 -8.99004 -8.54308 -7.12452 -5.93041 -3.21422 2.93394 3.35184 3.41702 3.43320 3.47253 3.71352 4.46875 4.55770 4.71204 4.80235 4.83793 4.99107 5.00605 5.05378 5.19104 5.23576 5.26431 5.37293 5.38969 5.47513 5.51201 5.53155 5.59754 5.64608 5.69080 5.75199 5.81499 5.82545 5.85985 5.93155 5.95584 6.04468 6.11333 6.11775 6.18146 6.24841 6.25536 6.29305 6.34710 6.55170 6.68031 6.81028 7.11513 7.24449 7.60934 7.91329 8.26794 8.57577 9.37415 9.91667 10.25145 11.29982 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.013497 B = 0.003749 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.996450 B = 7466.706208 C = 8630.448086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 C -0.150 4.150 4 C 0.095 3.905 5 H 0.059 0.941 6 C -0.126 4.126 7 C -0.111 4.111 8 H 0.101 0.899 9 C 0.523 3.477 10 O -0.553 6.553 11 N -0.699 5.699 12 C 0.123 3.877 13 H 0.089 0.911 14 C -0.187 4.187 15 C 0.164 3.836 16 H 0.066 0.934 17 N -0.704 5.704 18 C -0.242 4.242 19 H 0.074 0.926 20 C -0.011 4.011 21 N -0.934 5.934 22 Si 0.909 3.091 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.168 4.168 27 C -0.146 4.146 28 C 0.065 3.935 29 O -0.379 6.379 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.407 0.593 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.378 0.622 43 H 0.256 0.744 44 H 0.070 0.930 45 H 0.090 0.910 46 H 0.074 0.926 47 H 0.084 0.916 48 H 0.097 0.903 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.869 1.535 -13.581 14.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.105 4.105 3 C -0.207 4.207 4 C 0.037 3.963 5 H 0.077 0.923 6 C -0.164 4.164 7 C -0.132 4.132 8 H 0.119 0.881 9 C 0.309 3.691 10 O -0.431 6.431 11 N -0.352 5.352 12 C 0.017 3.983 13 H 0.107 0.893 14 C -0.229 4.229 15 C 0.052 3.948 16 H 0.084 0.916 17 N -0.345 5.345 18 C -0.373 4.373 19 H 0.092 0.908 20 C -0.207 4.207 21 N -0.583 5.583 22 Si 0.740 3.260 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.207 4.207 27 C -0.184 4.184 28 C -0.012 4.012 29 O -0.298 6.298 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.246 0.754 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.213 0.787 43 H 0.066 0.934 44 H 0.089 0.911 45 H 0.108 0.892 46 H 0.093 0.907 47 H 0.102 0.898 48 H 0.115 0.885 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.527 1.857 -14.150 14.972 hybrid contribution -0.291 0.103 1.582 1.612 sum -4.818 1.960 -12.568 13.602 Atomic orbital electron populations 1.21768 0.94707 1.02329 1.01240 1.21068 0.96343 0.95685 0.97403 1.21893 1.01752 0.95114 1.01990 1.22181 0.92697 0.83265 0.98174 0.92344 1.22061 0.95112 1.01419 0.97855 1.21380 0.92274 0.98283 1.01274 0.88076 1.20457 0.89597 0.77523 0.81487 1.90638 1.69981 1.46681 1.35828 1.45889 1.06901 1.56136 1.26235 1.21758 0.79975 0.97671 0.98859 0.89294 1.24322 0.99661 1.00097 0.98822 1.21259 0.91177 0.92141 0.90215 0.91564 1.42219 1.03909 1.80349 1.07984 1.19343 0.94214 1.38023 0.85694 0.90775 1.24731 0.95433 1.02069 0.98445 1.69621 0.98294 1.54590 1.35760 0.86080 0.77358 0.77660 0.84856 1.20491 1.21825 1.21771 1.23857 1.01059 0.97334 0.98483 1.22182 0.96982 0.95491 1.03772 1.22546 0.93324 0.96502 0.88827 1.87879 1.74608 1.23322 1.44009 0.92929 0.92975 0.91846 0.90494 0.92488 0.91858 0.92268 0.90124 0.90392 0.75428 0.90505 0.91171 0.78652 0.93398 0.91124 0.89179 0.90731 0.89758 0.88532 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.05 37.16 0.34 -1.00 16 2 C -0.09 -0.89 2.72 -90.62 -0.25 -1.13 16 3 C -0.15 -1.38 8.84 37.16 0.33 -1.05 16 4 C 0.09 1.12 2.22 -26.68 -0.06 1.06 16 5 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 6 C -0.13 -1.67 3.59 -26.59 -0.10 -1.77 16 7 C -0.11 -1.58 2.61 -91.58 -0.24 -1.82 16 8 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 9 C 0.52 8.95 7.16 -10.98 -0.08 8.87 16 10 O -0.55 -10.86 15.59 5.55 0.09 -10.77 16 11 N -0.70 -11.97 5.03 -53.02 -0.27 -12.24 16 12 C 0.12 2.06 4.29 -67.12 -0.29 1.77 16 13 H 0.09 1.49 7.50 -51.93 -0.39 1.10 16 14 C -0.19 -3.31 7.70 -25.78 -0.20 -3.50 16 15 C 0.16 3.12 4.57 -66.98 -0.31 2.82 16 16 H 0.07 1.25 8.10 -51.93 -0.42 0.83 16 17 N -0.70 -16.43 5.18 -52.50 -0.27 -16.70 16 18 C -0.24 -6.37 9.97 -15.06 -0.15 -6.52 16 19 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 20 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 21 N -0.93 -26.10 13.06 55.49 0.72 -25.38 16 22 Si 0.91 21.50 29.55 -169.99 -5.02 16.47 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 C -0.17 -2.65 7.58 -25.91 -0.20 -2.84 16 27 C -0.15 -1.86 5.30 -26.59 -0.14 -2.00 16 28 C 0.06 0.76 6.84 37.21 0.25 1.01 16 29 O -0.38 -4.82 9.73 -35.23 -0.34 -5.16 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.64 7.68 -51.93 -0.40 0.24 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.62 6.49 -51.93 -0.34 0.28 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 1.08 6.57 -51.93 -0.34 0.74 16 38 H 0.08 1.11 8.02 -51.92 -0.42 0.69 16 39 H 0.41 7.26 5.68 -40.82 -0.23 7.03 16 40 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.07 1.42 8.14 -51.92 -0.42 1.00 16 42 H 0.38 8.96 5.34 -40.82 -0.22 8.74 16 43 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 44 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 46 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 47 H 0.08 1.08 7.70 -51.93 -0.40 0.68 16 48 H 0.10 0.98 8.14 -51.92 -0.42 0.55 16 49 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 380.62 15.07 5.74 5.74 Total: -1.00 -29.58 380.62 -9.15 -38.73 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: -8.62 Total: 15.81 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -1.18 Total: -6.50 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: 0.19 Total: -54.32 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.26 Total: -15.93 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.58 -9.15 -38.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022932801.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.812 kcal (2) G-P(sol) polarization free energy of solvation -29.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds