Wall clock time and date at job start Tue Mar 31 2020 10:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47298 * 2 1 4 4 C 1.52999 * 109.46899 * 120.00574 * 2 1 3 5 5 H 1.08995 * 109.48805 * 300.02719 * 4 2 1 6 6 C 1.53095 * 109.47989 * 179.97438 * 4 2 1 7 7 C 1.53176 * 109.16286 * 182.40803 * 6 4 2 8 8 H 1.08999 * 109.54211 * 297.02393 * 7 6 4 9 9 C 1.50705 * 109.54206 * 176.84452 * 7 6 4 10 10 O 1.21284 * 119.99918 * 0.02562 * 9 7 6 11 11 N 1.34773 * 119.99993 * 179.97438 * 9 7 6 12 12 C 1.46495 * 120.00128 * 180.02562 * 11 9 7 13 13 H 1.09003 * 112.84590 * 334.66365 * 12 11 9 14 14 C 1.53779 * 113.62089 * 105.86023 * 12 11 9 15 15 C 1.54048 * 86.98638 * 89.15958 * 14 12 11 16 16 H 1.09001 * 113.69732 * 139.99113 * 15 14 12 17 17 N 1.46498 * 113.61761 * 270.88952 * 15 14 12 18 18 C 1.36933 * 120.00222 * 252.49311 * 17 15 14 19 19 H 1.08008 * 119.99820 * 359.97438 * 18 17 15 20 20 C 1.38808 * 120.00549 * 179.97438 * 18 17 15 21 21 N 1.31621 * 119.99919 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00313 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46955 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47064 * 120.00245 * 22 20 18 25 25 H 1.48500 * 109.47065 * 240.00422 * 22 20 18 26 26 C 1.53786 * 87.07767 * 25.43649 * 15 14 12 27 27 C 1.53181 * 109.03560 * 56.98068 * 7 6 4 28 28 C 1.53095 * 109.15940 * 303.01673 * 27 7 6 29 29 O 1.42895 * 109.41568 * 57.61417 * 28 27 7 30 30 H 1.08999 * 109.47221 * 300.00152 * 1 2 3 31 31 H 1.09004 * 109.47163 * 59.99502 * 1 2 3 32 32 H 1.09000 * 109.47465 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46977 * 240.00314 * 2 1 3 34 34 H 1.09001 * 109.46850 * 60.00236 * 3 2 1 35 35 H 1.08997 * 109.47241 * 179.97438 * 3 2 1 36 36 H 1.08994 * 109.47401 * 300.00324 * 3 2 1 37 37 H 1.09001 * 109.52293 * 62.49555 * 6 4 2 38 38 H 1.09007 * 109.52035 * 302.31323 * 6 4 2 39 39 H 0.97001 * 120.00010 * 359.97438 * 11 9 7 40 40 H 1.08997 * 113.61672 * 203.66606 * 14 12 11 41 41 H 1.09011 * 113.60990 * 334.57037 * 14 12 11 42 42 H 0.96998 * 120.00353 * 72.48782 * 17 15 14 43 43 H 0.96999 * 120.00349 * 179.97438 * 21 20 18 44 44 H 1.09001 * 113.61403 * 220.02455 * 26 15 14 45 45 H 1.08994 * 113.61675 * 89.11819 * 26 15 14 46 46 H 1.08994 * 109.52035 * 62.92686 * 27 7 6 47 47 H 1.09002 * 109.51551 * 183.11378 * 27 7 6 48 48 H 1.09010 * 109.47455 * 177.59523 * 28 27 7 49 49 H 1.09000 * 109.48076 * 297.62503 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 1.2492 5 1 1.6764 -0.2082 2.1393 6 6 3.5709 -0.7221 1.2491 7 6 4.0734 -1.4977 2.4707 8 1 3.7525 -0.9917 3.3812 9 6 5.5783 -1.5701 2.4377 10 8 6.1906 -1.0524 1.5277 11 7 6.2439 -2.2093 3.4200 12 6 7.7068 -2.2792 3.3883 13 1 8.1129 -2.1939 2.3803 14 6 8.3902 -1.3531 4.4081 15 6 8.3028 -2.5227 5.4068 16 1 9.1902 -2.6342 6.0297 17 7 7.0588 -2.5423 6.1803 18 6 7.0718 -2.2025 7.5067 19 1 7.9993 -1.9204 7.9828 20 6 5.8930 -2.2205 8.2395 21 7 4.7628 -2.5647 7.6595 22 14 5.9110 -1.7576 10.0492 23 1 7.2963 -1.4131 10.4582 24 1 5.0246 -0.5867 10.2694 25 1 5.4263 -2.9046 10.8583 26 6 8.2847 -3.4594 4.1872 27 6 3.4914 -2.9142 2.4371 28 6 1.9635 -2.8288 2.3914 29 8 1.5643 -2.0689 1.2489 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6767 1.9562 0.8900 35 1 3.1300 1.4424 0.0005 36 1 1.6767 1.9563 -0.8899 37 1 3.9356 0.3041 1.2938 38 1 3.9349 -1.1997 0.3393 39 1 5.7543 -2.6224 4.1484 40 1 9.4116 -1.0847 4.1384 41 1 7.7851 -0.4910 4.6891 42 1 6.2258 -2.7959 5.7528 43 1 3.9391 -2.5777 8.1716 44 1 7.5944 -4.2967 4.2900 45 1 9.2772 -3.7658 3.8573 46 1 3.8538 -3.4360 1.5515 47 1 3.7994 -3.4557 3.3316 48 1 1.5452 -3.8332 2.3243 49 1 1.5994 -2.3429 3.2966 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022932801.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:18 Heat of formation + Delta-G solvation = -88.087634 kcal Electronic energy + Delta-G solvation = -27087.639151 eV Core-core repulsion = 23435.076937 eV Total energy + Delta-G solvation = -3652.562214 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.65142 -40.46731 -39.16701 -36.34947 -35.49570 -34.89411 -33.83667 -31.80794 -31.04692 -28.14797 -27.05711 -26.55762 -26.12989 -24.77427 -24.08415 -22.33426 -21.16474 -20.99622 -20.29452 -19.25920 -18.17539 -17.44722 -17.15366 -16.85681 -16.59873 -16.33546 -15.72863 -15.59751 -15.36680 -15.30354 -14.93448 -14.78077 -14.62791 -14.30372 -13.99254 -13.54961 -13.47995 -13.34769 -13.21830 -12.98633 -12.83590 -12.71277 -12.55138 -12.40202 -12.20467 -12.11531 -12.00798 -11.80436 -11.73578 -11.70957 -11.47457 -11.28332 -11.16293 -10.91758 -10.83562 -10.38655 -9.95770 -9.02104 -7.96875 -5.24074 1.47780 1.49621 1.55722 1.57962 2.15170 2.55512 2.78126 3.36271 3.49500 3.54692 3.66768 3.71873 3.87661 3.88703 3.98781 4.04395 4.10067 4.26136 4.27274 4.30236 4.37360 4.40776 4.48653 4.60385 4.69134 4.77323 4.78970 4.83073 4.83767 4.86823 4.94586 5.00531 5.00939 5.03968 5.05376 5.09538 5.19853 5.21290 5.26790 5.35671 5.42874 5.48606 5.52637 5.71552 6.27386 6.27919 6.51320 7.17879 7.33969 8.06194 8.29788 9.26209 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.013497 B = 0.003749 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.996450 B = 7466.706208 C = 8630.448086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.086 4.086 3 C -0.148 4.148 4 C 0.096 3.904 5 H 0.060 0.940 6 C -0.118 4.118 7 C -0.109 4.109 8 H 0.097 0.903 9 C 0.520 3.480 10 O -0.580 6.580 11 N -0.700 5.700 12 C 0.119 3.881 13 H 0.094 0.906 14 C -0.178 4.178 15 C 0.147 3.853 16 H 0.070 0.930 17 N -0.716 5.716 18 C -0.245 4.245 19 H 0.075 0.925 20 C -0.065 4.065 21 N -0.961 5.961 22 Si 0.967 3.033 23 H -0.270 1.270 24 H -0.297 1.297 25 H -0.293 1.293 26 C -0.144 4.144 27 C -0.140 4.140 28 C 0.065 3.935 29 O -0.386 6.386 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.404 0.596 40 H 0.105 0.895 41 H 0.038 0.962 42 H 0.373 0.627 43 H 0.252 0.748 44 H 0.066 0.934 45 H 0.126 0.874 46 H 0.073 0.927 47 H 0.082 0.918 48 H 0.116 0.884 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.586 1.396 -14.016 14.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.104 4.104 3 C -0.205 4.205 4 C 0.038 3.962 5 H 0.078 0.922 6 C -0.157 4.157 7 C -0.130 4.130 8 H 0.115 0.885 9 C 0.308 3.692 10 O -0.460 6.460 11 N -0.351 5.351 12 C 0.014 3.986 13 H 0.112 0.888 14 C -0.220 4.220 15 C 0.037 3.963 16 H 0.088 0.912 17 N -0.356 5.356 18 C -0.376 4.376 19 H 0.093 0.907 20 C -0.258 4.258 21 N -0.611 5.611 22 Si 0.797 3.203 23 H -0.195 1.195 24 H -0.224 1.224 25 H -0.220 1.220 26 C -0.184 4.184 27 C -0.178 4.178 28 C -0.012 4.012 29 O -0.305 6.305 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.242 0.758 40 H 0.123 0.877 41 H 0.057 0.943 42 H 0.208 0.792 43 H 0.061 0.939 44 H 0.085 0.915 45 H 0.144 0.856 46 H 0.092 0.908 47 H 0.100 0.900 48 H 0.134 0.866 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.201 1.715 -14.597 15.286 hybrid contribution -0.286 0.160 1.689 1.721 sum -4.487 1.876 -12.908 13.794 Atomic orbital electron populations 1.21731 0.93776 1.02035 1.02091 1.21087 0.97081 0.95978 0.96265 1.21876 1.01129 0.94589 1.02895 1.22238 0.91523 0.83239 0.99177 0.92232 1.21995 0.96228 1.00764 0.96671 1.21403 0.90461 0.99569 1.01560 0.88541 1.20922 0.90672 0.76743 0.80910 1.90615 1.70779 1.47828 1.36806 1.45967 1.07267 1.55891 1.25975 1.21852 0.79786 0.97965 0.98983 0.88796 1.24254 1.00857 0.98387 0.98507 1.21527 0.89579 0.94156 0.91079 0.91236 1.42343 1.05290 1.80484 1.07508 1.19652 0.94127 1.36750 0.87104 0.90717 1.25408 0.95417 1.03133 1.01879 1.69737 0.98521 1.56091 1.36755 0.85170 0.77447 0.76813 0.80872 1.19487 1.22398 1.22020 1.23757 1.02792 0.96132 0.95671 1.22142 0.97828 0.94227 1.03578 1.22636 0.92390 0.97491 0.88670 1.87881 1.74583 1.23660 1.44391 0.92711 0.91501 0.92688 0.90915 0.92202 0.92803 0.90759 0.90556 0.91507 0.75829 0.87675 0.94307 0.79195 0.93871 0.91501 0.85599 0.90805 0.89984 0.86599 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.05 71.98 0.65 -1.75 16 2 C -0.09 -1.67 2.72 -10.80 -0.03 -1.70 16 3 C -0.15 -2.57 8.84 71.98 0.64 -1.93 16 4 C 0.10 2.22 2.22 30.63 0.07 2.29 16 5 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 6 C -0.12 -3.15 3.59 30.69 0.11 -3.04 16 7 C -0.11 -3.14 2.61 -11.42 -0.03 -3.17 16 8 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 9 C 0.52 17.94 7.16 87.66 0.63 18.57 16 10 O -0.58 -22.89 15.59 -3.04 -0.05 -22.94 16 11 N -0.70 -23.94 5.03 -440.03 -2.21 -26.16 16 12 C 0.12 3.86 4.29 45.52 0.20 4.06 16 13 H 0.09 2.99 7.50 -2.39 -0.02 2.97 16 14 C -0.18 -6.10 7.70 31.21 0.24 -5.86 16 15 C 0.15 5.40 4.57 45.61 0.21 5.61 16 16 H 0.07 2.50 8.10 -2.39 -0.02 2.48 16 17 N -0.72 -33.29 5.18 -320.01 -1.66 -34.95 16 18 C -0.24 -12.84 9.97 84.03 0.84 -12.00 16 19 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 20 C -0.07 -3.53 5.50 84.86 0.47 -3.06 16 21 N -0.96 -54.15 13.06 21.65 0.28 -53.87 16 22 Si 0.97 44.22 29.55 68.60 2.03 46.25 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 24 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 25 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 26 C -0.14 -4.23 7.58 31.12 0.24 -4.00 16 27 C -0.14 -3.53 5.30 30.69 0.16 -3.36 16 28 C 0.06 1.46 6.84 72.01 0.49 1.95 16 29 O -0.39 -9.49 9.73 -148.98 -1.45 -10.94 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.05 1.04 7.68 -2.39 -0.02 1.03 16 33 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.05 1.03 6.49 -2.39 -0.02 1.02 16 36 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.08 2.08 6.57 -2.39 -0.02 2.06 16 38 H 0.07 1.92 8.02 -2.38 -0.02 1.90 16 39 H 0.40 14.55 5.68 -92.71 -0.53 14.03 16 40 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 41 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 42 H 0.37 17.84 5.34 -92.71 -0.50 17.35 16 43 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 44 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.13 2.83 8.14 -2.39 -0.02 2.81 16 46 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 47 H 0.08 2.11 7.70 -2.39 -0.02 2.09 16 48 H 0.12 2.17 8.14 -2.38 -0.02 2.15 16 49 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -62.54 380.62 1.72 -60.82 By element: Atomic # 1 Polarization: 49.28 SS G_CDS: -0.09 Total: 49.19 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: 4.87 Total: -7.41 kcal Atomic # 7 Polarization: -111.39 SS G_CDS: -3.59 Total: -114.97 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -1.50 Total: -33.88 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -62.54 1.72 -60.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022932801.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.270 kcal (2) G-P(sol) polarization free energy of solvation -62.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds