Wall clock time and date at job start Tue Mar 31 2020 10:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47345 * 2 1 4 4 H 1.09006 * 109.47674 * 54.97343 * 3 2 1 5 5 C 1.53091 * 109.48308 * 174.99995 * 3 2 1 6 6 C 1.53171 * 109.16549 * 177.59527 * 5 3 2 7 7 H 1.08996 * 109.54644 * 183.06779 * 6 5 3 8 8 C 1.53002 * 109.54556 * 62.88359 * 6 5 3 9 9 C 1.50706 * 109.46925 * 175.00107 * 8 6 5 10 10 O 1.21279 * 120.00072 * 0.02562 * 9 8 6 11 11 N 1.34777 * 119.99762 * 179.97438 * 9 8 6 12 12 C 1.46496 * 120.00258 * 179.97438 * 11 9 8 13 13 H 1.09002 * 112.84698 * 23.81010 * 12 11 9 14 14 C 1.53781 * 113.61479 * 155.00061 * 12 11 9 15 15 C 1.53785 * 87.08021 * 139.98553 * 14 12 11 16 16 H 1.09005 * 113.61586 * 89.19723 * 15 14 12 17 17 N 1.46498 * 113.61434 * 220.02210 * 15 14 12 18 18 C 1.36939 * 119.99636 * 204.99967 * 17 15 14 19 19 H 1.07997 * 120.00302 * 359.97438 * 18 17 15 20 20 C 1.38819 * 119.99599 * 179.97438 * 18 17 15 21 21 N 1.31617 * 119.99962 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99675 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46808 * 90.00467 * 22 20 18 24 24 H 1.48496 * 109.47269 * 209.99866 * 22 20 18 25 25 H 1.48497 * 109.47669 * 330.00548 * 22 20 18 26 26 C 1.53779 * 113.61716 * 252.50494 * 12 11 9 27 27 C 1.53183 * 109.03377 * 303.01840 * 6 5 3 28 28 C 1.53091 * 109.16276 * 56.98202 * 27 6 5 29 29 O 1.42902 * 109.48095 * 294.94346 * 3 2 1 30 30 H 1.09001 * 109.47317 * 300.00307 * 1 2 3 31 31 H 1.09010 * 109.47019 * 60.00144 * 1 2 3 32 32 H 1.08994 * 109.47571 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46884 * 240.00006 * 2 1 3 34 34 H 1.08997 * 109.47121 * 120.00185 * 2 1 3 35 35 H 1.08997 * 109.51969 * 57.68520 * 5 3 2 36 36 H 1.08998 * 109.52114 * 297.49861 * 5 3 2 37 37 H 1.09000 * 109.46497 * 55.00370 * 8 6 5 38 38 H 1.09000 * 109.47312 * 295.00150 * 8 6 5 39 39 H 0.96999 * 120.00047 * 0.02562 * 11 9 8 40 40 H 1.08997 * 113.61529 * 254.53080 * 14 12 11 41 41 H 1.08998 * 113.61491 * 25.35284 * 14 12 11 42 42 H 0.96993 * 120.00146 * 24.99264 * 17 15 14 43 43 H 0.97004 * 119.99627 * 179.97438 * 21 20 18 44 44 H 1.09000 * 113.60898 * 334.56095 * 26 12 11 45 45 H 1.08994 * 113.62073 * 105.46736 * 26 12 11 46 46 H 1.09004 * 109.52012 * 176.88706 * 27 6 5 47 47 H 1.09000 * 109.52469 * 297.07041 * 27 6 5 48 48 H 1.09007 * 109.47868 * 182.40530 * 28 27 6 49 49 H 1.08997 * 109.48966 * 62.37871 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6051 1.9817 0.8416 5 6 3.5658 1.4445 0.1258 6 6 4.0734 2.8884 0.0646 7 1 5.1628 2.8937 0.0989 8 6 3.5200 3.6763 1.2537 9 6 4.1169 5.0602 1.2607 10 8 4.9066 5.3844 0.3993 11 7 3.7722 5.9378 2.2238 12 6 4.3527 7.2828 2.2311 13 1 4.6964 7.6007 1.2467 14 6 3.4785 8.3271 2.9453 15 6 4.7800 8.9020 3.5290 16 1 5.2411 9.6642 2.9007 17 7 4.6633 9.3137 4.9300 18 6 5.5017 10.2718 5.4342 19 1 6.2493 10.7236 4.7991 20 6 5.3907 10.6624 6.7617 21 7 4.4800 10.1114 7.5358 22 14 6.5350 11.9688 7.4496 23 1 5.9243 13.3096 7.2629 24 1 6.7543 11.7221 8.8974 25 1 7.8357 11.9136 6.7354 26 6 5.3878 7.5010 3.3472 27 6 3.5969 3.5305 -1.2420 28 6 2.0700 3.4479 -1.3149 29 8 1.6633 2.0811 -1.2215 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.9995 0.8708 -0.6932 36 1 3.8534 0.9973 1.0773 37 1 3.7785 3.1644 2.1806 38 1 2.4358 3.7487 1.1687 39 1 3.1402 5.6786 2.9125 40 1 2.9674 9.0078 2.2645 41 1 2.8132 7.9001 3.6956 42 1 3.9920 8.9078 5.5005 43 1 4.4027 10.3841 8.4635 44 1 5.2453 6.8482 4.2084 45 1 6.4178 7.5147 2.9910 46 1 3.9069 4.5752 -1.2686 47 1 4.0314 2.9990 -2.0887 48 1 1.7283 3.8650 -2.2623 49 1 1.6354 4.0136 -0.4908 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022946081.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:23 Heat of formation + Delta-G solvation = -75.243463 kcal Electronic energy + Delta-G solvation = -25944.703888 eV Core-core repulsion = 22292.698639 eV Total energy + Delta-G solvation = -3652.005249 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.64386 -39.43784 -37.95359 -34.78096 -34.24820 -34.07827 -32.74447 -30.10919 -30.02655 -28.68512 -25.26407 -25.14957 -24.34531 -23.85501 -22.32806 -21.66406 -20.57318 -19.59725 -18.86448 -17.22471 -16.98942 -16.70084 -16.40487 -16.11539 -15.67187 -14.87629 -14.67662 -14.53281 -14.21605 -14.13915 -13.96721 -13.74892 -13.29908 -13.06918 -13.04784 -12.84060 -12.17085 -12.02461 -11.99292 -11.94366 -11.70159 -11.51488 -11.41154 -11.28828 -11.20875 -10.94710 -10.77888 -10.62301 -10.51818 -10.40476 -10.33972 -10.07365 -9.74916 -9.59883 -9.45086 -8.93517 -8.75493 -7.01487 -5.83030 -3.11897 2.65809 3.26676 3.40564 3.46260 3.47680 3.52436 4.28368 4.45107 4.52803 4.56510 4.64992 4.74571 4.79854 4.93187 4.97520 5.03474 5.06312 5.13068 5.20698 5.25328 5.30136 5.34935 5.35531 5.39754 5.45017 5.55111 5.63109 5.66173 5.76078 5.81216 5.83730 5.90831 5.94903 6.01107 6.03935 6.08844 6.13487 6.22238 6.28007 6.49497 6.58263 6.73291 7.01738 7.03523 7.61818 7.66276 8.29250 8.35523 9.46889 10.03385 10.37923 11.39355 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.030121 B = 0.002163 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.372837 B =12943.857829 C =13304.730595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C 0.088 3.912 4 H 0.058 0.942 5 C -0.146 4.146 6 C -0.072 4.072 7 H 0.084 0.916 8 C -0.146 4.146 9 C 0.511 3.489 10 O -0.543 6.543 11 N -0.715 5.715 12 C 0.117 3.883 13 H 0.108 0.892 14 C -0.159 4.159 15 C 0.169 3.831 16 H 0.080 0.920 17 N -0.710 5.710 18 C -0.244 4.244 19 H 0.072 0.928 20 C -0.013 4.013 21 N -0.933 5.933 22 Si 0.908 3.092 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C -0.176 4.176 27 C -0.156 4.156 28 C 0.059 3.941 29 O -0.379 6.379 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.399 0.601 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.079 0.921 45 H 0.058 0.942 46 H 0.094 0.906 47 H 0.068 0.932 48 H 0.092 0.908 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.268 -19.827 -15.927 26.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C 0.030 3.970 4 H 0.076 0.924 5 C -0.184 4.184 6 C -0.091 4.091 7 H 0.102 0.898 8 C -0.186 4.186 9 C 0.298 3.702 10 O -0.420 6.420 11 N -0.365 5.365 12 C 0.012 3.988 13 H 0.126 0.874 14 C -0.199 4.199 15 C 0.056 3.944 16 H 0.097 0.903 17 N -0.348 5.348 18 C -0.376 4.376 19 H 0.090 0.910 20 C -0.209 4.209 21 N -0.581 5.581 22 Si 0.739 3.261 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.207 1.207 26 C -0.218 4.218 27 C -0.193 4.193 28 C -0.017 4.017 29 O -0.298 6.298 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.233 0.767 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.097 0.903 45 H 0.077 0.923 46 H 0.112 0.888 47 H 0.087 0.913 48 H 0.110 0.890 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.671 -19.518 -16.615 26.486 hybrid contribution 0.265 0.572 1.326 1.468 sum -6.406 -18.946 -15.289 25.174 Atomic orbital electron populations 1.21723 0.95280 1.01466 1.02317 1.21556 0.96711 0.94511 1.02647 1.22171 0.93571 0.93926 0.87341 0.92382 1.22281 0.96327 0.96837 1.02964 1.20905 1.01292 0.93237 0.93617 0.89810 1.21903 1.01986 0.93716 1.00969 1.20613 0.81605 0.86786 0.81227 1.90651 1.34916 1.78926 1.37554 1.46113 1.46818 1.13998 1.29580 1.22481 0.96070 0.80593 0.99624 0.87372 1.23862 0.99044 0.97478 0.99505 1.21353 0.92803 0.92509 0.87733 0.90251 1.42354 1.40941 1.46094 1.05423 1.19319 1.10934 1.13255 0.94043 0.90978 1.24774 0.99237 1.00349 0.96565 1.69657 1.36220 1.45603 1.06623 0.86170 0.80261 0.81458 0.78186 1.21650 1.21753 1.20681 1.24323 0.98241 1.01881 0.97371 1.22313 0.95909 1.03702 0.97376 1.22628 0.94470 0.82782 1.01852 1.87909 1.78662 1.24850 1.38391 0.92915 0.91943 0.92859 0.91196 0.90695 0.90716 0.90818 0.88771 0.89042 0.76713 0.91564 0.90019 0.78110 0.93444 0.90273 0.92314 0.88798 0.91287 0.89030 0.93396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.81 37.16 0.36 -0.64 16 2 C -0.12 -0.78 5.64 -26.73 -0.15 -0.93 16 3 C 0.09 0.69 2.37 -26.69 -0.06 0.62 16 4 H 0.06 0.43 6.72 -51.93 -0.35 0.09 16 5 C -0.15 -1.11 4.92 -26.60 -0.13 -1.24 16 6 C -0.07 -0.66 2.33 -90.44 -0.21 -0.87 16 7 H 0.08 0.89 7.95 -51.93 -0.41 0.47 16 8 C -0.15 -1.29 4.60 -27.88 -0.13 -1.42 16 9 C 0.51 6.34 7.53 -10.98 -0.08 6.26 16 10 O -0.54 -8.58 13.61 5.56 0.08 -8.50 16 11 N -0.72 -8.68 5.35 -53.02 -0.28 -8.96 16 12 C 0.12 1.71 4.24 -67.12 -0.28 1.42 16 13 H 0.11 1.66 7.46 -51.93 -0.39 1.27 16 14 C -0.16 -2.45 7.58 -25.92 -0.20 -2.64 16 15 C 0.17 3.24 4.48 -67.11 -0.30 2.94 16 16 H 0.08 1.53 8.10 -51.93 -0.42 1.11 16 17 N -0.71 -17.36 5.40 -52.63 -0.28 -17.64 16 18 C -0.24 -6.69 9.97 -15.06 -0.15 -6.84 16 19 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 20 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -27.73 13.06 55.49 0.72 -27.00 16 22 Si 0.91 22.17 29.55 -169.99 -5.02 17.14 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 26 C -0.18 -3.04 7.68 -25.92 -0.20 -3.24 16 27 C -0.16 -1.53 5.40 -26.59 -0.14 -1.67 16 28 C 0.06 0.53 6.57 37.20 0.24 0.78 16 29 O -0.38 -3.69 9.94 -35.23 -0.35 -4.05 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.48 7.83 -51.92 -0.41 0.08 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.09 0.70 5.03 -51.93 -0.26 0.44 16 39 H 0.40 3.96 8.73 -40.82 -0.36 3.60 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.08 1.24 8.10 -51.93 -0.42 0.82 16 42 H 0.38 9.90 7.92 -40.82 -0.32 9.58 16 43 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.09 1.11 5.96 -51.93 -0.31 0.80 16 47 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.05 0.42 6.49 -51.93 -0.34 0.08 16 LS Contribution 381.00 15.07 5.74 5.74 Total: -1.00 -31.44 381.00 -9.53 -40.97 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -8.60 Total: 10.24 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -1.53 Total: -7.94 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: 0.16 Total: -53.61 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -0.27 Total: -12.55 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.44 -9.53 -40.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022946081.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.271 kcal (2) G-P(sol) polarization free energy of solvation -31.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds