Wall clock time and date at job start Tue Mar 31 2020 10:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47345 * 2 1 4 4 H 1.09006 * 109.47674 * 54.97343 * 3 2 1 5 5 C 1.53091 * 109.48308 * 174.99995 * 3 2 1 6 6 C 1.53171 * 109.16549 * 177.59527 * 5 3 2 7 7 H 1.08996 * 109.54644 * 183.06779 * 6 5 3 8 8 C 1.53002 * 109.54556 * 62.88359 * 6 5 3 9 9 C 1.50706 * 109.46925 * 175.00107 * 8 6 5 10 10 O 1.21279 * 120.00072 * 0.02562 * 9 8 6 11 11 N 1.34777 * 119.99762 * 179.97438 * 9 8 6 12 12 C 1.46496 * 120.00258 * 179.97438 * 11 9 8 13 13 H 1.09002 * 112.84698 * 23.81010 * 12 11 9 14 14 C 1.53781 * 113.61479 * 155.00061 * 12 11 9 15 15 C 1.53785 * 87.08021 * 139.98553 * 14 12 11 16 16 H 1.09005 * 113.61586 * 89.19723 * 15 14 12 17 17 N 1.46498 * 113.61434 * 220.02210 * 15 14 12 18 18 C 1.36939 * 119.99636 * 204.99967 * 17 15 14 19 19 H 1.07997 * 120.00302 * 359.97438 * 18 17 15 20 20 C 1.38819 * 119.99599 * 179.97438 * 18 17 15 21 21 N 1.31617 * 119.99962 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99675 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46808 * 90.00467 * 22 20 18 24 24 H 1.48496 * 109.47269 * 209.99866 * 22 20 18 25 25 H 1.48497 * 109.47669 * 330.00548 * 22 20 18 26 26 C 1.53779 * 113.61716 * 252.50494 * 12 11 9 27 27 C 1.53183 * 109.03377 * 303.01840 * 6 5 3 28 28 C 1.53091 * 109.16276 * 56.98202 * 27 6 5 29 29 O 1.42902 * 109.48095 * 294.94346 * 3 2 1 30 30 H 1.09001 * 109.47317 * 300.00307 * 1 2 3 31 31 H 1.09010 * 109.47019 * 60.00144 * 1 2 3 32 32 H 1.08994 * 109.47571 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46884 * 240.00006 * 2 1 3 34 34 H 1.08997 * 109.47121 * 120.00185 * 2 1 3 35 35 H 1.08997 * 109.51969 * 57.68520 * 5 3 2 36 36 H 1.08998 * 109.52114 * 297.49861 * 5 3 2 37 37 H 1.09000 * 109.46497 * 55.00370 * 8 6 5 38 38 H 1.09000 * 109.47312 * 295.00150 * 8 6 5 39 39 H 0.96999 * 120.00047 * 0.02562 * 11 9 8 40 40 H 1.08997 * 113.61529 * 254.53080 * 14 12 11 41 41 H 1.08998 * 113.61491 * 25.35284 * 14 12 11 42 42 H 0.96993 * 120.00146 * 24.99264 * 17 15 14 43 43 H 0.97004 * 119.99627 * 179.97438 * 21 20 18 44 44 H 1.09000 * 113.60898 * 334.56095 * 26 12 11 45 45 H 1.08994 * 113.62073 * 105.46736 * 26 12 11 46 46 H 1.09004 * 109.52012 * 176.88706 * 27 6 5 47 47 H 1.09000 * 109.52469 * 297.07041 * 27 6 5 48 48 H 1.09007 * 109.47868 * 182.40530 * 28 27 6 49 49 H 1.08997 * 109.48966 * 62.37871 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6051 1.9817 0.8416 5 6 3.5658 1.4445 0.1258 6 6 4.0734 2.8884 0.0646 7 1 5.1628 2.8937 0.0989 8 6 3.5200 3.6763 1.2537 9 6 4.1169 5.0602 1.2607 10 8 4.9066 5.3844 0.3993 11 7 3.7722 5.9378 2.2238 12 6 4.3527 7.2828 2.2311 13 1 4.6964 7.6007 1.2467 14 6 3.4785 8.3271 2.9453 15 6 4.7800 8.9020 3.5290 16 1 5.2411 9.6642 2.9007 17 7 4.6633 9.3137 4.9300 18 6 5.5017 10.2718 5.4342 19 1 6.2493 10.7236 4.7991 20 6 5.3907 10.6624 6.7617 21 7 4.4800 10.1114 7.5358 22 14 6.5350 11.9688 7.4496 23 1 5.9243 13.3096 7.2629 24 1 6.7543 11.7221 8.8974 25 1 7.8357 11.9136 6.7354 26 6 5.3878 7.5010 3.3472 27 6 3.5969 3.5305 -1.2420 28 6 2.0700 3.4479 -1.3149 29 8 1.6633 2.0811 -1.2215 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.9995 0.8708 -0.6932 36 1 3.8534 0.9973 1.0773 37 1 3.7785 3.1644 2.1806 38 1 2.4358 3.7487 1.1687 39 1 3.1402 5.6786 2.9125 40 1 2.9674 9.0078 2.2645 41 1 2.8132 7.9001 3.6956 42 1 3.9920 8.9078 5.5005 43 1 4.4027 10.3841 8.4635 44 1 5.2453 6.8482 4.2084 45 1 6.4178 7.5147 2.9910 46 1 3.9069 4.5752 -1.2686 47 1 4.0314 2.9990 -2.0887 48 1 1.7283 3.8650 -2.2623 49 1 1.6354 4.0136 -0.4908 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022946081.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:22 Heat of formation + Delta-G solvation = -95.437429 kcal Electronic energy + Delta-G solvation = -25945.579564 eV Core-core repulsion = 22292.698639 eV Total energy + Delta-G solvation = -3652.880925 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.51520 -40.44825 -39.18604 -35.84650 -35.41997 -34.83338 -34.23183 -31.87901 -30.72132 -29.55737 -26.56644 -26.40312 -25.69617 -24.52600 -23.76893 -22.22132 -21.64567 -20.90341 -19.81417 -19.12003 -18.00013 -17.45848 -17.33559 -17.10733 -16.54622 -16.33016 -16.08328 -15.50920 -15.34581 -15.04130 -14.89254 -14.66953 -14.50438 -14.36773 -13.90815 -13.79041 -13.48127 -13.31057 -13.16316 -12.83903 -12.66211 -12.59917 -12.41138 -12.26566 -12.18469 -12.17148 -12.07463 -11.98602 -11.76033 -11.74511 -11.50897 -11.41937 -11.05037 -10.88259 -10.66384 -10.20959 -9.91552 -8.99164 -7.96244 -5.24118 1.47696 1.48442 1.56997 1.67649 2.26763 2.56702 2.90116 3.35475 3.60878 3.69386 3.75712 3.80251 3.86433 3.97091 3.98293 4.08274 4.22434 4.24209 4.25007 4.31632 4.33186 4.46554 4.50527 4.61625 4.66350 4.73316 4.76701 4.79069 4.88386 4.90147 4.95176 5.01000 5.14321 5.14631 5.15288 5.17842 5.21437 5.25087 5.33344 5.37360 5.43232 5.49797 5.51483 5.70284 6.26392 6.37299 6.64213 7.32351 7.32974 8.08643 8.32133 9.26775 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.030121 B = 0.002163 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.372837 B =12943.857829 C =13304.730595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C 0.083 3.917 4 H 0.067 0.933 5 C -0.139 4.139 6 C -0.072 4.072 7 H 0.066 0.934 8 C -0.137 4.137 9 C 0.509 3.491 10 O -0.579 6.579 11 N -0.709 5.709 12 C 0.137 3.863 13 H 0.104 0.896 14 C -0.140 4.140 15 C 0.149 3.851 16 H 0.077 0.923 17 N -0.723 5.723 18 C -0.245 4.245 19 H 0.075 0.925 20 C -0.075 4.075 21 N -0.968 5.968 22 Si 0.971 3.029 23 H -0.287 1.287 24 H -0.296 1.296 25 H -0.272 1.272 26 C -0.170 4.170 27 C -0.152 4.152 28 C 0.061 3.939 29 O -0.393 6.393 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.117 0.883 38 H 0.110 0.890 39 H 0.413 0.587 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.376 0.624 43 H 0.251 0.749 44 H 0.071 0.929 45 H 0.050 0.950 46 H 0.072 0.928 47 H 0.063 0.937 48 H 0.095 0.905 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.871 -20.981 -16.148 27.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C 0.026 3.974 4 H 0.085 0.915 5 C -0.177 4.177 6 C -0.091 4.091 7 H 0.085 0.915 8 C -0.176 4.176 9 C 0.297 3.703 10 O -0.459 6.459 11 N -0.359 5.359 12 C 0.031 3.969 13 H 0.122 0.878 14 C -0.179 4.179 15 C 0.038 3.962 16 H 0.095 0.905 17 N -0.361 5.361 18 C -0.377 4.377 19 H 0.093 0.907 20 C -0.267 4.267 21 N -0.618 5.618 22 Si 0.800 3.200 23 H -0.214 1.214 24 H -0.222 1.222 25 H -0.197 1.197 26 C -0.212 4.212 27 C -0.190 4.190 28 C -0.015 4.015 29 O -0.313 6.313 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.111 0.889 35 H 0.089 0.911 36 H 0.110 0.890 37 H 0.135 0.865 38 H 0.128 0.872 39 H 0.249 0.751 40 H 0.099 0.901 41 H 0.106 0.894 42 H 0.208 0.792 43 H 0.060 0.940 44 H 0.090 0.910 45 H 0.069 0.931 46 H 0.091 0.909 47 H 0.082 0.918 48 H 0.114 0.886 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.280 -20.700 -16.881 27.685 hybrid contribution 0.476 0.885 1.291 1.636 sum -6.804 -19.815 -15.589 26.114 Atomic orbital electron populations 1.21712 0.95334 1.01893 1.01771 1.21585 0.96644 0.93861 1.03248 1.22344 0.93637 0.94553 0.86913 0.91491 1.22237 0.96136 0.95469 1.03842 1.20881 1.00325 0.94445 0.93410 0.91527 1.21913 1.02679 0.91215 1.01793 1.21246 0.80884 0.87840 0.80283 1.90650 1.36596 1.79738 1.38910 1.45993 1.46848 1.12984 1.30115 1.22071 0.94626 0.81906 0.98268 0.87806 1.23660 0.97431 0.97414 0.99434 1.21679 0.95820 0.93284 0.85395 0.90541 1.42493 1.40441 1.45853 1.07319 1.19691 1.10763 1.13066 0.94202 0.90701 1.25543 1.01165 1.02889 0.97142 1.69797 1.38092 1.47350 1.06570 0.85173 0.78784 0.78957 0.77047 1.21362 1.22227 1.19667 1.24149 0.98569 1.00253 0.98193 1.22233 0.96691 1.02278 0.97791 1.22615 0.93637 0.82838 1.02414 1.87905 1.78805 1.25039 1.39551 0.92502 0.93406 0.92004 0.91758 0.88931 0.91148 0.88956 0.86460 0.87201 0.75083 0.90122 0.89382 0.79180 0.93989 0.91045 0.93091 0.90946 0.91834 0.88647 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.81 71.98 0.71 -1.00 16 2 C -0.12 -1.29 5.64 30.59 0.17 -1.11 16 3 C 0.08 1.10 2.37 30.62 0.07 1.17 16 4 H 0.07 0.78 6.72 -2.38 -0.02 0.76 16 5 C -0.14 -1.79 4.92 30.68 0.15 -1.64 16 6 C -0.07 -1.21 2.33 -10.67 -0.02 -1.24 16 7 H 0.07 1.37 7.95 -2.39 -0.02 1.35 16 8 C -0.14 -2.06 4.60 29.85 0.14 -1.92 16 9 C 0.51 11.76 7.53 87.66 0.66 12.42 16 10 O -0.58 -17.96 13.61 -3.03 -0.04 -18.00 16 11 N -0.71 -15.70 5.35 -440.04 -2.36 -18.06 16 12 C 0.14 3.80 4.24 45.52 0.19 3.99 16 13 H 0.10 3.06 7.46 -2.39 -0.02 3.05 16 14 C -0.14 -4.07 7.58 31.12 0.24 -3.83 16 15 C 0.15 5.64 4.48 45.52 0.20 5.84 16 16 H 0.08 2.92 8.10 -2.38 -0.02 2.90 16 17 N -0.72 -35.42 5.40 -320.42 -1.73 -37.15 16 18 C -0.25 -13.46 9.97 84.03 0.84 -12.62 16 19 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 20 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 21 N -0.97 -58.15 13.06 21.65 0.28 -57.87 16 22 Si 0.97 45.76 29.55 68.60 2.03 47.79 16 23 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 24 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 25 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 26 C -0.17 -5.75 7.68 31.12 0.24 -5.51 16 27 C -0.15 -2.91 5.40 30.69 0.17 -2.74 16 28 C 0.06 1.03 6.57 72.01 0.47 1.50 16 29 O -0.39 -7.06 9.94 -148.98 -1.48 -8.54 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.58 16 31 H 0.05 0.68 7.83 -2.38 -0.02 0.66 16 32 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.11 1.31 5.03 -2.39 -0.01 1.29 16 39 H 0.41 7.03 8.73 -92.71 -0.81 6.22 16 40 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.09 2.49 8.10 -2.39 -0.02 2.47 16 42 H 0.38 19.48 7.92 -92.71 -0.73 18.75 16 43 H 0.25 14.67 8.31 -92.71 -0.77 13.89 16 44 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 45 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.07 1.72 5.96 -2.39 -0.01 1.70 16 47 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 49 H 0.05 0.83 6.49 -2.39 -0.02 0.81 16 Total: -1.00 -67.87 381.00 0.79 -67.08 By element: Atomic # 1 Polarization: 35.83 SS G_CDS: -0.60 Total: 35.23 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: 4.69 Total: -10.49 kcal Atomic # 7 Polarization: -109.27 SS G_CDS: -3.80 Total: -113.07 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -1.52 Total: -26.54 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -67.87 0.79 -67.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022946081.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.359 kcal (2) G-P(sol) polarization free energy of solvation -67.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds