Wall clock time and date at job start Tue Mar 31 2020 10:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46824 * 2 1 4 4 H 1.08999 * 110.27704 * 55.63779 * 3 2 1 5 5 O 1.43644 * 110.31168 * 293.54879 * 3 2 1 6 6 C 1.43247 * 109.97051 * 216.66113 * 5 3 2 7 7 C 1.54375 * 107.58858 * 1.70481 * 6 5 3 8 8 C 1.54951 * 110.30967 * 177.83438 * 3 2 1 9 9 H 1.09003 * 111.11957 * 37.43871 * 8 3 2 10 10 C 1.50702 * 111.12492 * 273.28271 * 8 3 2 11 11 O 1.21280 * 119.99797 * 359.97438 * 10 8 3 12 12 N 1.34773 * 119.99695 * 180.02562 * 10 8 3 13 13 C 1.46499 * 119.99688 * 180.02562 * 12 10 8 14 14 C 1.53004 * 109.47185 * 179.97438 * 13 12 10 15 15 H 1.08998 * 109.58363 * 59.62717 * 14 13 12 16 16 C 1.53185 * 109.58859 * 179.91224 * 14 13 12 17 17 C 1.53039 * 109.31605 * 174.42027 * 16 14 13 18 18 C 1.53038 * 109.53757 * 298.64029 * 17 16 14 19 19 C 1.53187 * 109.31714 * 61.36018 * 18 17 16 20 20 N 1.46921 * 109.58661 * 299.20427 * 14 13 12 21 21 C 1.36945 * 120.62974 * 6.57954 * 20 14 13 22 22 H 1.07997 * 120.00057 * 328.34817 * 21 20 14 23 23 C 1.38808 * 119.99976 * 148.34447 * 21 20 14 24 24 N 1.31620 * 119.99979 * 345.37578 * 23 21 20 25 25 Si 1.86800 * 119.99872 * 165.36557 * 23 21 20 26 26 H 1.48506 * 109.46668 * 90.00712 * 25 23 21 27 27 H 1.48502 * 109.47293 * 210.00089 * 25 23 21 28 28 H 1.48493 * 109.47389 * 330.00915 * 25 23 21 29 29 H 1.08999 * 109.47285 * 299.99840 * 1 2 3 30 30 H 1.08997 * 109.47325 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47394 * 59.99828 * 1 2 3 32 32 H 1.09000 * 109.47394 * 120.00172 * 2 1 3 33 33 H 1.08998 * 109.46764 * 240.00222 * 2 1 3 34 34 H 1.08993 * 109.83047 * 121.22224 * 6 5 3 35 35 H 1.09009 * 109.82362 * 242.19657 * 6 5 3 36 36 H 1.09007 * 110.84599 * 139.54723 * 7 6 5 37 37 H 1.09003 * 110.85183 * 262.96711 * 7 6 5 38 38 H 0.97000 * 120.00128 * 359.97438 * 12 10 8 39 39 H 1.09006 * 109.47269 * 299.99312 * 13 12 10 40 40 H 1.09000 * 109.47815 * 59.99430 * 13 12 10 41 41 H 1.08996 * 109.50291 * 294.37337 * 16 14 13 42 42 H 1.08999 * 109.49834 * 54.46845 * 16 14 13 43 43 H 1.09000 * 109.45598 * 58.65724 * 17 16 14 44 44 H 1.08994 * 109.46388 * 178.61622 * 17 16 14 45 45 H 1.09006 * 109.49851 * 181.31342 * 18 17 16 46 46 H 1.09006 * 109.49570 * 301.37333 * 18 17 16 47 47 H 1.08999 * 109.58493 * 65.15257 * 19 18 17 48 48 H 1.09000 * 109.59394 * 185.43744 * 19 18 17 49 49 H 0.97003 * 119.99379 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6217 1.9910 0.8440 5 8 1.6987 2.0920 -1.2349 6 6 2.7560 2.9726 -1.6330 7 6 3.8855 2.8477 -0.5881 8 6 3.5883 1.4656 0.0549 9 1 4.0145 0.6565 -0.5383 10 6 4.0822 1.4109 1.4777 11 8 3.2887 1.3578 2.3933 12 7 5.4056 1.4220 1.7324 13 6 5.8857 1.3682 3.1154 14 6 7.4155 1.3931 3.1256 15 1 7.7692 2.3072 2.6488 16 6 7.9205 1.3392 4.5708 17 6 9.4465 1.2240 4.5699 18 6 9.8617 -0.0692 3.8646 19 6 9.3788 -0.0313 2.4113 20 7 7.9320 0.2244 2.4003 21 6 7.0809 -0.6111 1.7272 22 1 6.0759 -0.7656 2.0911 23 6 7.5099 -1.2592 0.5772 24 7 8.6099 -0.8652 -0.0288 25 14 6.5263 -2.6907 -0.1103 26 1 5.5171 -2.1807 -1.0731 27 1 7.4413 -3.6320 -0.8046 28 1 5.8385 -3.3972 0.9999 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.1279 2.6833 -2.6159 35 1 2.3909 3.9993 -1.6619 36 1 4.8627 2.8487 -1.0711 37 1 3.8195 3.6455 0.1518 38 1 6.0402 1.4648 1.0000 39 1 5.5044 2.2282 3.6661 40 1 5.5345 0.4502 3.5867 41 1 7.6247 2.2486 5.0938 42 1 7.4906 0.4734 5.0743 43 1 9.8748 2.0777 4.0446 44 1 9.8103 1.2102 5.5972 45 1 10.9476 -0.1622 3.8848 46 1 9.4140 -0.9219 4.3751 47 1 9.8947 0.7655 1.8755 48 1 9.5865 -0.9879 1.9320 49 1 8.9099 -1.3185 -0.8323 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024566480.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:20 Heat of formation + Delta-G solvation = -80.877995 kcal Electronic energy + Delta-G solvation = -27854.120720 eV Core-core repulsion = 24201.871139 eV Total energy + Delta-G solvation = -3652.249581 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.17837 -38.55970 -37.54512 -34.24523 -33.39721 -33.10415 -32.33311 -30.60586 -29.96070 -28.34829 -26.13133 -24.95718 -23.49151 -22.35489 -22.13264 -20.84270 -20.54354 -19.65233 -19.10256 -17.45921 -16.57862 -16.08439 -15.63135 -15.47581 -15.00857 -14.52220 -14.35864 -14.08506 -13.84170 -13.70307 -13.46954 -13.17199 -13.06540 -12.91798 -12.86872 -12.44764 -12.19590 -12.01981 -11.71068 -11.64195 -11.35131 -11.22206 -11.03088 -10.81890 -10.79403 -10.68130 -10.62259 -10.49805 -10.33940 -10.19946 -10.04470 -9.60976 -9.50504 -9.41505 -9.18643 -8.63557 -8.27269 -6.70686 -5.90280 -3.36689 3.09790 3.26826 3.36662 3.40396 3.67135 3.94384 4.37685 4.55819 4.77698 4.92193 5.15258 5.18222 5.26466 5.26933 5.32167 5.45059 5.47042 5.53568 5.60467 5.62803 5.65147 5.73129 5.81657 5.90334 5.92847 6.01381 6.04342 6.10157 6.12450 6.15234 6.26970 6.32308 6.36581 6.37525 6.45816 6.55516 6.66449 6.69060 6.81270 6.93625 7.10406 7.13426 7.32218 7.58309 7.73611 8.20386 8.35139 8.79992 9.10416 9.72042 10.30810 11.16559 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014151 B = 0.004867 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.241530 B = 5751.371808 C = 6647.196605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.122 4.122 3 C 0.103 3.897 4 H 0.085 0.915 5 O -0.381 6.381 6 C 0.054 3.946 7 C -0.144 4.144 8 C -0.144 4.144 9 H 0.113 0.887 10 C 0.521 3.479 11 O -0.561 6.561 12 N -0.689 5.689 13 C 0.134 3.866 14 C 0.161 3.839 15 H 0.031 0.969 16 C -0.127 4.127 17 C -0.107 4.107 18 C -0.144 4.144 19 C 0.175 3.825 20 N -0.587 5.587 21 C -0.252 4.252 22 H 0.069 0.931 23 C 0.009 3.991 24 N -0.898 5.898 25 Si 0.890 3.110 26 H -0.285 1.285 27 H -0.289 1.289 28 H -0.279 1.279 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.415 0.585 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.051 0.949 42 H 0.060 0.940 43 H 0.052 0.948 44 H 0.044 0.956 45 H 0.046 0.954 46 H 0.053 0.947 47 H 0.018 0.982 48 H 0.082 0.918 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.545 6.500 0.683 8.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.160 4.160 3 C 0.046 3.954 4 H 0.103 0.897 5 O -0.300 6.300 6 C -0.022 4.022 7 C -0.182 4.182 8 C -0.165 4.165 9 H 0.131 0.869 10 C 0.306 3.694 11 O -0.441 6.441 12 N -0.339 5.339 13 C 0.010 3.990 14 C 0.054 3.946 15 H 0.049 0.951 16 C -0.167 4.167 17 C -0.145 4.145 18 C -0.184 4.184 19 C 0.049 3.951 20 N -0.312 5.312 21 C -0.381 4.381 22 H 0.086 0.914 23 C -0.190 4.190 24 N -0.542 5.542 25 Si 0.719 3.281 26 H -0.212 1.212 27 H -0.215 1.215 28 H -0.204 1.204 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.110 0.890 37 H 0.098 0.902 38 H 0.253 0.747 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.072 0.928 47 H 0.036 0.964 48 H 0.100 0.900 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.190 6.361 1.059 8.939 hybrid contribution 0.329 -0.839 -0.689 1.134 sum -5.862 5.521 0.370 8.061 Atomic orbital electron populations 1.21670 0.95354 1.01216 1.01963 1.21657 0.96702 0.94712 1.02883 1.22814 0.91335 0.94272 0.87003 0.89743 1.88388 1.41547 1.59539 1.40559 1.23064 0.87229 0.94208 0.97726 1.23072 1.00449 0.96032 0.98644 1.23029 0.97725 1.00006 0.95789 0.86921 1.19926 0.82908 0.76705 0.89814 1.90640 1.55277 1.51746 1.46466 1.45985 1.06322 1.71597 1.10012 1.21296 0.94233 1.00793 0.82670 1.20723 0.90705 0.91418 0.91793 0.95134 1.21939 0.96197 1.00626 0.97948 1.21357 0.95684 0.98530 0.98911 1.22195 0.98782 0.96780 1.00602 1.20723 0.83159 1.01078 0.90129 1.44060 1.02973 1.25427 1.58703 1.19159 0.96382 1.19693 1.02903 0.91370 1.25074 0.97813 1.00149 0.95988 1.70011 1.24191 1.40773 1.19182 0.86495 0.79487 0.83068 0.79008 1.21209 1.21526 1.20436 0.92816 0.93015 0.92324 0.90245 0.91519 0.91174 0.91466 0.89043 0.90214 0.74723 0.92725 0.91568 0.93056 0.92086 0.92892 0.93703 0.93527 0.92819 0.96365 0.89996 0.93589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.83 37.16 0.37 -1.49 16 2 C -0.12 -1.80 5.68 -26.73 -0.15 -1.96 16 3 C 0.10 1.57 2.57 -25.70 -0.07 1.51 16 4 H 0.08 1.38 7.38 -51.93 -0.38 0.99 16 5 O -0.38 -5.61 10.69 -35.23 -0.38 -5.98 16 6 C 0.05 0.66 7.79 37.88 0.30 0.95 16 7 C -0.14 -1.83 6.49 -24.79 -0.16 -1.99 16 8 C -0.14 -2.24 2.90 -89.52 -0.26 -2.50 16 9 H 0.11 1.83 8.06 -51.93 -0.42 1.41 16 10 C 0.52 9.43 7.16 -10.99 -0.08 9.36 16 11 O -0.56 -11.51 15.72 5.56 0.09 -11.42 16 12 N -0.69 -12.62 3.88 -60.29 -0.23 -12.86 16 13 C 0.13 2.46 4.43 -4.04 -0.02 2.44 16 14 C 0.16 3.00 3.00 -67.60 -0.20 2.80 16 15 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 16 C -0.13 -2.09 5.37 -26.62 -0.14 -2.23 16 17 C -0.11 -1.71 5.88 -26.69 -0.16 -1.87 16 18 C -0.14 -2.61 6.08 -26.62 -0.16 -2.78 16 19 C 0.17 3.83 5.26 -3.71 -0.02 3.82 16 20 N -0.59 -13.02 2.97 -164.78 -0.49 -13.51 16 21 C -0.25 -6.09 6.98 -15.06 -0.11 -6.20 16 22 H 0.07 1.71 5.90 -52.49 -0.31 1.40 16 23 C 0.01 0.23 4.95 -17.43 -0.09 0.15 16 24 N -0.90 -23.71 11.32 55.49 0.63 -23.08 16 25 Si 0.89 20.56 29.58 -169.99 -5.03 15.53 16 26 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.74 7.91 -51.93 -0.41 0.33 16 32 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 36 H 0.09 1.08 8.14 -51.92 -0.42 0.65 16 37 H 0.08 0.99 8.03 -51.93 -0.42 0.57 16 38 H 0.42 7.94 7.44 -40.82 -0.30 7.64 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.07 1.34 7.38 -51.93 -0.38 0.96 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.08 2.04 6.27 -51.93 -0.33 1.72 16 49 H 0.25 6.62 8.31 -40.82 -0.34 6.28 16 LS Contribution 376.78 15.07 5.68 5.68 Total: -1.00 -27.24 376.78 -9.53 -36.77 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -8.85 Total: 8.85 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -0.95 Total: 0.02 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: -0.09 Total: -49.44 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -0.29 Total: -17.41 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.03 Total: 15.53 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -27.24 -9.53 -36.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024566480.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.104 kcal (2) G-P(sol) polarization free energy of solvation -27.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds