Wall clock time and date at job start Tue Mar 31 2020 10:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46824 * 2 1 4 4 H 1.08999 * 110.27704 * 55.63779 * 3 2 1 5 5 O 1.43644 * 110.31168 * 293.54879 * 3 2 1 6 6 C 1.43247 * 109.97051 * 216.66113 * 5 3 2 7 7 C 1.54375 * 107.58858 * 1.70481 * 6 5 3 8 8 C 1.54951 * 110.30967 * 177.83438 * 3 2 1 9 9 H 1.09003 * 111.11957 * 37.43871 * 8 3 2 10 10 C 1.50702 * 111.12492 * 273.28271 * 8 3 2 11 11 O 1.21280 * 119.99797 * 359.97438 * 10 8 3 12 12 N 1.34773 * 119.99695 * 180.02562 * 10 8 3 13 13 C 1.46499 * 119.99688 * 180.02562 * 12 10 8 14 14 C 1.53004 * 109.47185 * 179.97438 * 13 12 10 15 15 H 1.08998 * 109.58363 * 59.62717 * 14 13 12 16 16 C 1.53185 * 109.58859 * 179.91224 * 14 13 12 17 17 C 1.53039 * 109.31605 * 174.42027 * 16 14 13 18 18 C 1.53038 * 109.53757 * 298.64029 * 17 16 14 19 19 C 1.53187 * 109.31714 * 61.36018 * 18 17 16 20 20 N 1.46921 * 109.58661 * 299.20427 * 14 13 12 21 21 C 1.36945 * 120.62974 * 6.57954 * 20 14 13 22 22 H 1.07997 * 120.00057 * 328.34817 * 21 20 14 23 23 C 1.38808 * 119.99976 * 148.34447 * 21 20 14 24 24 N 1.31620 * 119.99979 * 345.37578 * 23 21 20 25 25 Si 1.86800 * 119.99872 * 165.36557 * 23 21 20 26 26 H 1.48506 * 109.46668 * 90.00712 * 25 23 21 27 27 H 1.48502 * 109.47293 * 210.00089 * 25 23 21 28 28 H 1.48493 * 109.47389 * 330.00915 * 25 23 21 29 29 H 1.08999 * 109.47285 * 299.99840 * 1 2 3 30 30 H 1.08997 * 109.47325 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47394 * 59.99828 * 1 2 3 32 32 H 1.09000 * 109.47394 * 120.00172 * 2 1 3 33 33 H 1.08998 * 109.46764 * 240.00222 * 2 1 3 34 34 H 1.08993 * 109.83047 * 121.22224 * 6 5 3 35 35 H 1.09009 * 109.82362 * 242.19657 * 6 5 3 36 36 H 1.09007 * 110.84599 * 139.54723 * 7 6 5 37 37 H 1.09003 * 110.85183 * 262.96711 * 7 6 5 38 38 H 0.97000 * 120.00128 * 359.97438 * 12 10 8 39 39 H 1.09006 * 109.47269 * 299.99312 * 13 12 10 40 40 H 1.09000 * 109.47815 * 59.99430 * 13 12 10 41 41 H 1.08996 * 109.50291 * 294.37337 * 16 14 13 42 42 H 1.08999 * 109.49834 * 54.46845 * 16 14 13 43 43 H 1.09000 * 109.45598 * 58.65724 * 17 16 14 44 44 H 1.08994 * 109.46388 * 178.61622 * 17 16 14 45 45 H 1.09006 * 109.49851 * 181.31342 * 18 17 16 46 46 H 1.09006 * 109.49570 * 301.37333 * 18 17 16 47 47 H 1.08999 * 109.58493 * 65.15257 * 19 18 17 48 48 H 1.09000 * 109.59394 * 185.43744 * 19 18 17 49 49 H 0.97003 * 119.99379 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6217 1.9910 0.8440 5 8 1.6987 2.0920 -1.2349 6 6 2.7560 2.9726 -1.6330 7 6 3.8855 2.8477 -0.5881 8 6 3.5883 1.4656 0.0549 9 1 4.0145 0.6565 -0.5383 10 6 4.0822 1.4109 1.4777 11 8 3.2887 1.3578 2.3933 12 7 5.4056 1.4220 1.7324 13 6 5.8857 1.3682 3.1154 14 6 7.4155 1.3931 3.1256 15 1 7.7692 2.3072 2.6488 16 6 7.9205 1.3392 4.5708 17 6 9.4465 1.2240 4.5699 18 6 9.8617 -0.0692 3.8646 19 6 9.3788 -0.0313 2.4113 20 7 7.9320 0.2244 2.4003 21 6 7.0809 -0.6111 1.7272 22 1 6.0759 -0.7656 2.0911 23 6 7.5099 -1.2592 0.5772 24 7 8.6099 -0.8652 -0.0288 25 14 6.5263 -2.6907 -0.1103 26 1 5.5171 -2.1807 -1.0731 27 1 7.4413 -3.6320 -0.8046 28 1 5.8385 -3.3972 0.9999 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.1279 2.6833 -2.6159 35 1 2.3909 3.9993 -1.6619 36 1 4.8627 2.8487 -1.0711 37 1 3.8195 3.6455 0.1518 38 1 6.0402 1.4648 1.0000 39 1 5.5044 2.2282 3.6661 40 1 5.5345 0.4502 3.5867 41 1 7.6247 2.2486 5.0938 42 1 7.4906 0.4734 5.0743 43 1 9.8748 2.0777 4.0446 44 1 9.8103 1.2102 5.5972 45 1 10.9476 -0.1622 3.8848 46 1 9.4140 -0.9219 4.3751 47 1 9.8947 0.7655 1.8755 48 1 9.5865 -0.9879 1.9320 49 1 8.9099 -1.3185 -0.8323 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024566480.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:19 Heat of formation + Delta-G solvation = -95.851472 kcal Electronic energy + Delta-G solvation = -27854.770019 eV Core-core repulsion = 24201.871139 eV Total energy + Delta-G solvation = -3652.898879 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.48319 -39.96561 -39.03444 -35.73396 -34.89490 -34.52064 -33.56436 -32.12530 -31.64887 -29.44753 -27.71813 -26.59679 -24.70335 -23.83753 -23.44696 -22.25395 -21.79599 -21.09502 -20.62637 -18.86621 -18.14859 -17.36805 -17.30671 -16.91386 -16.22909 -16.09315 -15.71455 -15.68558 -15.31839 -14.90852 -14.85494 -14.56724 -14.39774 -14.28788 -14.04569 -13.98222 -13.62441 -13.51652 -13.14364 -12.82963 -12.79952 -12.72985 -12.57141 -12.42061 -12.32708 -12.05814 -11.92564 -11.80503 -11.79947 -11.65983 -11.53416 -11.15469 -11.08546 -10.76270 -10.52267 -10.45167 -9.84345 -8.54877 -7.83455 -5.30031 1.38829 1.46031 1.51261 1.65699 2.30385 2.48851 2.78095 3.31666 3.42304 3.58586 3.61001 3.76546 4.00369 4.06781 4.13138 4.17617 4.21572 4.24649 4.28707 4.40315 4.43839 4.50876 4.56058 4.65467 4.75483 4.77001 4.80010 4.83301 4.87284 4.97575 5.00115 5.04042 5.05916 5.14364 5.22032 5.22513 5.28146 5.35865 5.38471 5.46451 5.62584 5.63008 5.75683 5.83385 6.00216 6.44532 6.69988 7.19665 7.31418 7.88789 8.42748 9.20852 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014151 B = 0.004867 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.241530 B = 5751.371808 C = 6647.196605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.125 4.125 3 C 0.109 3.891 4 H 0.073 0.927 5 O -0.390 6.390 6 C 0.051 3.949 7 C -0.137 4.137 8 C -0.145 4.145 9 H 0.105 0.895 10 C 0.522 3.478 11 O -0.587 6.587 12 N -0.690 5.690 13 C 0.139 3.861 14 C 0.160 3.840 15 H 0.034 0.966 16 C -0.122 4.122 17 C -0.102 4.102 18 C -0.136 4.136 19 C 0.179 3.821 20 N -0.600 5.600 21 C -0.235 4.235 22 H 0.059 0.941 23 C -0.030 4.030 24 N -0.922 5.922 25 Si 0.931 3.069 26 H -0.280 1.280 27 H -0.296 1.296 28 H -0.285 1.285 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.412 0.588 39 H 0.073 0.927 40 H 0.043 0.957 41 H 0.082 0.918 42 H 0.052 0.948 43 H 0.058 0.942 44 H 0.073 0.927 45 H 0.064 0.936 46 H 0.044 0.956 47 H 0.002 0.998 48 H 0.046 0.954 49 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.832 7.877 1.258 9.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.162 4.162 3 C 0.051 3.949 4 H 0.091 0.909 5 O -0.310 6.310 6 C -0.025 4.025 7 C -0.174 4.174 8 C -0.167 4.167 9 H 0.123 0.877 10 C 0.308 3.692 11 O -0.469 6.469 12 N -0.339 5.339 13 C 0.015 3.985 14 C 0.054 3.946 15 H 0.052 0.948 16 C -0.162 4.162 17 C -0.140 4.140 18 C -0.175 4.175 19 C 0.054 3.946 20 N -0.325 5.325 21 C -0.366 4.366 22 H 0.077 0.923 23 C -0.226 4.226 24 N -0.568 5.568 25 Si 0.761 3.239 26 H -0.206 1.206 27 H -0.223 1.223 28 H -0.211 1.211 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.120 0.880 37 H 0.103 0.897 38 H 0.248 0.752 39 H 0.091 0.909 40 H 0.062 0.938 41 H 0.100 0.900 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.063 0.937 47 H 0.020 0.980 48 H 0.065 0.935 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -6.482 7.753 1.648 10.239 hybrid contribution 0.420 -1.239 -0.826 1.547 sum -6.062 6.514 0.822 8.936 Atomic orbital electron populations 1.21629 0.93751 1.02163 1.02101 1.21660 0.98200 0.94400 1.01964 1.22671 0.90851 0.94342 0.87025 0.90935 1.88370 1.42571 1.60028 1.40061 1.23273 0.86411 0.94972 0.97881 1.23083 1.01387 0.94177 0.98791 1.23008 0.98058 1.01577 0.94048 0.87726 1.20312 0.82477 0.75745 0.90650 1.90622 1.55762 1.52899 1.47582 1.46007 1.06434 1.71532 1.09912 1.21259 0.94054 1.00430 0.82767 1.20879 0.90777 0.89940 0.92978 0.94838 1.21896 0.96494 1.01806 0.95994 1.21340 0.95254 0.97103 1.00290 1.22058 0.99750 0.97986 0.97724 1.20543 0.83178 0.98521 0.92364 1.44236 1.02895 1.26516 1.58826 1.19145 0.96034 1.19204 1.02196 0.92303 1.25461 0.98621 1.01852 0.96702 1.70109 1.25414 1.41722 1.19541 0.85836 0.78486 0.81262 0.78286 1.20621 1.22296 1.21130 0.92779 0.91711 0.92005 0.91960 0.91567 0.89837 0.89294 0.87985 0.89744 0.75151 0.90856 0.93813 0.89987 0.92935 0.92356 0.90817 0.91774 0.93687 0.97980 0.93537 0.94260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 9.83 71.98 0.71 -2.72 16 2 C -0.12 -3.66 5.68 30.59 0.17 -3.49 16 3 C 0.11 3.26 2.57 31.26 0.08 3.34 16 4 H 0.07 2.35 7.38 -2.39 -0.02 2.33 16 5 O -0.39 -10.92 10.69 -148.98 -1.59 -12.51 16 6 C 0.05 1.11 7.79 72.45 0.56 1.68 16 7 C -0.14 -3.25 6.49 31.85 0.21 -3.05 16 8 C -0.15 -4.45 2.90 -10.08 -0.03 -4.48 16 9 H 0.10 3.39 8.06 -2.39 -0.02 3.37 16 10 C 0.52 18.81 7.16 87.66 0.63 19.44 16 11 O -0.59 -24.12 15.72 -3.03 -0.05 -24.16 16 12 N -0.69 -25.08 3.88 -463.05 -1.80 -26.88 16 13 C 0.14 4.98 4.43 86.38 0.38 5.36 16 14 C 0.16 5.78 3.00 44.97 0.14 5.92 16 15 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 16 C -0.12 -3.68 5.37 30.67 0.16 -3.51 16 17 C -0.10 -2.95 5.88 30.62 0.18 -2.77 16 18 C -0.14 -4.72 6.08 30.67 0.19 -4.54 16 19 C 0.18 7.91 5.26 86.36 0.45 8.36 16 20 N -0.60 -26.54 2.97 -675.26 -2.00 -28.54 16 21 C -0.24 -11.50 6.98 84.03 0.59 -10.92 16 22 H 0.06 2.99 5.90 -2.91 -0.02 2.97 16 23 C -0.03 -1.52 4.95 84.86 0.42 -1.10 16 24 N -0.92 -49.70 11.32 21.65 0.25 -49.46 16 25 Si 0.93 42.89 29.58 68.60 2.03 44.92 16 26 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 27 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 28 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 29 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.06 1.48 7.91 -2.39 -0.02 1.46 16 32 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 36 H 0.10 2.22 8.14 -2.38 -0.02 2.20 16 37 H 0.08 1.94 8.03 -2.39 -0.02 1.92 16 38 H 0.41 15.68 7.44 -92.71 -0.69 14.99 16 39 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 40 H 0.04 1.77 7.38 -2.39 -0.02 1.75 16 41 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 46 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 47 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 48 H 0.05 2.37 6.27 -2.39 -0.01 2.35 16 49 H 0.25 13.24 8.31 -92.71 -0.77 12.47 16 Total: -1.00 -58.81 376.78 1.90 -56.91 By element: Atomic # 1 Polarization: 31.97 SS G_CDS: 0.22 Total: 32.19 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 4.84 Total: 7.53 kcal Atomic # 7 Polarization: -101.33 SS G_CDS: -3.56 Total: -104.88 kcal Atomic # 8 Polarization: -35.04 SS G_CDS: -1.64 Total: -36.68 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -58.81 1.90 -56.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024566480.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.941 kcal (2) G-P(sol) polarization free energy of solvation -58.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds