Wall clock time and date at job start Tue Mar 31 2020 10:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47002 * 2 1 4 4 H 1.09001 * 110.54207 * 58.24422 * 3 2 1 5 5 C 1.54809 * 110.49098 * 295.62515 * 3 2 1 6 6 C 1.54995 * 102.12450 * 220.46413 * 5 3 2 7 7 O 1.44375 * 103.49049 * 37.00496 * 6 5 3 8 8 C 1.43749 * 106.97634 * 319.93561 * 7 6 5 9 9 H 1.08995 * 109.87941 * 266.93838 * 8 7 6 10 10 C 1.50702 * 109.87361 * 145.93931 * 8 7 6 11 11 O 1.21275 * 120.00361 * 348.57175 * 10 8 7 12 12 N 1.34777 * 119.99725 * 168.57518 * 10 8 7 13 13 C 1.46494 * 120.00195 * 185.00877 * 12 10 8 14 14 C 1.53000 * 109.47494 * 266.04934 * 13 12 10 15 15 C 1.53002 * 109.46970 * 300.00269 * 14 13 12 16 16 C 1.52993 * 109.47000 * 299.99413 * 15 14 13 17 17 N 1.46507 * 109.47096 * 180.02562 * 16 15 14 18 18 C 1.36934 * 119.99848 * 85.00128 * 17 16 15 19 19 H 1.07997 * 120.00310 * 0.02562 * 18 17 16 20 20 C 1.38816 * 119.99704 * 180.02562 * 18 17 16 21 21 N 1.31617 * 119.99938 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99724 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47432 * 60.00011 * 22 20 18 24 24 H 1.48504 * 109.46794 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47188 * 299.99555 * 22 20 18 26 26 C 1.52996 * 109.47213 * 60.00193 * 16 15 14 27 27 C 1.52997 * 109.47446 * 299.99986 * 26 16 15 28 28 H 1.09001 * 109.47228 * 59.99919 * 1 2 3 29 29 H 1.08998 * 109.47003 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46928 * 300.00039 * 1 2 3 31 31 H 1.09001 * 109.46928 * 239.99961 * 2 1 3 32 32 H 1.08997 * 109.46932 * 119.99695 * 2 1 3 33 33 H 1.09003 * 110.90668 * 102.24380 * 5 3 2 34 34 H 1.09008 * 110.90588 * 338.67669 * 5 3 2 35 35 H 1.09002 * 110.61918 * 155.50719 * 6 5 3 36 36 H 1.09004 * 110.61519 * 278.34294 * 6 5 3 37 37 H 0.97006 * 119.99813 * 5.00384 * 12 10 8 38 38 H 1.09001 * 109.47063 * 26.05342 * 13 12 10 39 39 H 1.09004 * 109.46520 * 59.99937 * 14 13 12 40 40 H 1.08997 * 109.47333 * 179.97438 * 14 13 12 41 41 H 1.09001 * 109.46529 * 179.97438 * 15 14 13 42 42 H 1.09000 * 109.47198 * 59.99624 * 15 14 13 43 43 H 1.09000 * 109.47317 * 300.00138 * 16 15 14 44 44 H 0.96998 * 119.99860 * 265.00216 * 17 16 15 45 45 H 0.97001 * 119.99955 * 179.97438 * 21 20 18 46 46 H 1.08997 * 109.47283 * 180.02562 * 26 16 15 47 47 H 1.09000 * 109.47024 * 59.99765 * 26 16 15 48 48 H 1.08997 * 109.47311 * 300.00030 * 27 26 16 49 49 H 1.08995 * 109.47830 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6610 1.9821 0.8679 5 6 1.6293 2.1624 -1.3075 6 6 2.9035 2.9783 -1.6439 7 8 3.9796 2.0993 -1.2519 8 6 3.5812 1.4708 -0.0220 9 1 3.9562 2.0442 0.8257 10 6 4.1197 0.0643 0.0325 11 8 4.5996 -0.4402 -0.9604 12 7 4.0680 -0.6329 1.1848 13 6 4.6890 -1.9570 1.2683 14 6 3.6414 -3.0315 0.9702 15 6 2.5068 -2.9349 1.9921 16 6 3.0685 -3.1470 3.3993 17 7 1.9820 -3.0551 4.3778 18 6 1.2186 -4.1567 4.6587 19 1 1.4177 -5.0933 4.1593 20 6 0.1888 -4.0695 5.5855 21 7 -0.0535 -2.9281 6.1945 22 14 -0.8530 -5.5720 5.9681 23 1 0.0150 -6.6545 6.4971 24 1 -1.8780 -5.2182 6.9828 25 1 -1.5247 -6.0375 4.7281 26 6 4.1162 -2.0726 3.6975 27 6 5.2508 -2.1691 2.6756 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.7785 2.8222 -1.1375 34 1 1.4093 1.4422 -2.0956 35 1 2.9519 3.1918 -2.7117 36 1 2.9305 3.9030 -1.0673 37 1 3.6196 -0.2578 1.9589 38 1 5.4974 -2.0258 0.5403 39 1 3.2412 -2.8804 -0.0324 40 1 4.1035 -4.0167 1.0319 41 1 1.7602 -3.7001 1.7794 42 1 2.0447 -1.9496 1.9300 43 1 3.5306 -4.1322 3.4614 44 1 1.8034 -2.2140 4.8266 45 1 -0.7734 -2.8671 6.8418 46 1 4.5167 -2.2240 4.6998 47 1 3.6541 -1.0874 3.6353 48 1 5.7129 -3.1543 2.7377 49 1 5.9970 -1.4035 2.8877 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026507946.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:37 Heat of formation + Delta-G solvation = -87.546207 kcal Electronic energy + Delta-G solvation = -27800.287651 eV Core-core repulsion = 24147.748915 eV Total energy + Delta-G solvation = -3652.538736 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.89530 -39.16478 -37.55924 -35.02069 -34.51132 -32.72908 -30.98560 -30.52631 -30.33316 -29.31922 -27.48920 -24.14988 -23.67591 -23.02995 -22.22300 -21.59153 -20.87461 -20.08529 -18.81850 -17.41215 -17.10968 -16.85298 -16.11290 -15.43938 -15.20295 -14.97234 -14.83789 -14.52617 -14.16337 -13.72758 -13.65697 -13.46759 -13.40067 -13.13068 -12.64118 -12.38440 -12.29315 -12.17759 -11.87035 -11.78361 -11.64073 -11.44869 -11.23047 -11.01317 -10.91996 -10.87359 -10.78874 -10.68065 -10.33680 -10.19975 -10.17259 -10.11540 -9.73541 -9.57423 -9.44019 -8.91071 -8.79334 -6.96811 -5.78553 -3.06634 2.62764 2.97707 3.42282 3.47253 3.47620 3.88016 4.19017 4.45062 4.55628 4.56961 4.77408 4.93211 4.98698 5.02321 5.09228 5.14090 5.18358 5.28601 5.33862 5.43909 5.48769 5.49779 5.56815 5.65994 5.67214 5.71017 5.75201 5.85026 5.89250 5.92697 6.00350 6.07750 6.10024 6.12431 6.26505 6.27782 6.35236 6.51534 6.53064 6.56488 6.67159 6.75482 6.97001 7.13132 7.57612 7.68671 8.29196 8.40481 9.51630 10.09655 10.44112 11.44081 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.017039 B = 0.003844 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.855946 B = 7282.982879 C = 8244.123522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.134 4.134 3 C -0.111 4.111 4 H 0.094 0.906 5 C -0.148 4.148 6 C 0.044 3.956 7 O -0.349 6.349 8 C 0.060 3.940 9 H 0.091 0.909 10 C 0.521 3.479 11 O -0.528 6.528 12 N -0.718 5.718 13 C 0.148 3.852 14 C -0.128 4.128 15 C -0.134 4.134 16 C 0.177 3.823 17 N -0.725 5.725 18 C -0.237 4.237 19 H 0.069 0.931 20 C -0.013 4.013 21 N -0.934 5.934 22 Si 0.904 3.096 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.287 1.287 26 C -0.124 4.124 27 C -0.123 4.123 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.062 0.938 37 H 0.401 0.599 38 H 0.086 0.914 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.046 0.954 44 H 0.382 0.618 45 H 0.255 0.745 46 H 0.066 0.934 47 H 0.054 0.946 48 H 0.077 0.923 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.441 11.205 -12.276 17.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C -0.130 4.130 4 H 0.112 0.888 5 C -0.185 4.185 6 C -0.033 4.033 7 O -0.267 6.267 8 C -0.002 4.002 9 H 0.108 0.892 10 C 0.307 3.693 11 O -0.403 6.403 12 N -0.372 5.372 13 C 0.044 3.956 14 C -0.167 4.167 15 C -0.174 4.174 16 C 0.067 3.933 17 N -0.365 5.365 18 C -0.368 4.368 19 H 0.087 0.913 20 C -0.209 4.209 21 N -0.583 5.583 22 Si 0.735 3.265 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.163 4.163 27 C -0.161 4.161 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.113 0.887 36 H 0.081 0.919 37 H 0.238 0.762 38 H 0.104 0.896 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.216 0.784 45 H 0.065 0.935 46 H 0.085 0.915 47 H 0.073 0.927 48 H 0.095 0.905 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.926 10.637 -13.065 18.216 hybrid contribution -1.228 -0.275 0.906 1.551 sum 5.698 10.363 -12.159 16.961 Atomic orbital electron populations 1.21730 0.94958 1.02330 1.01532 1.21974 0.97014 0.94317 1.03810 1.22590 0.92367 0.98554 0.99514 0.88791 1.23231 0.98417 0.99505 0.97383 1.23618 0.85603 0.92941 1.01106 1.88980 1.39975 1.58765 1.38948 1.22784 0.95162 0.92472 0.89745 0.89161 1.20227 0.78548 0.87099 0.83469 1.90692 1.44843 1.70512 1.34264 1.46175 1.58162 1.19122 1.13779 1.20985 0.95448 0.81579 0.97636 1.21931 0.97215 0.98051 0.99548 1.22294 0.97064 1.01728 0.96347 1.20232 0.88436 0.96078 0.88542 1.42405 1.35503 1.11750 1.46830 1.19190 1.08996 0.90315 1.18297 0.91336 1.24706 0.99552 0.96913 0.99709 1.69641 1.33576 1.24012 1.31028 0.86312 0.80099 0.82398 0.77651 1.21309 1.21741 1.21338 1.21810 0.96134 0.99687 0.98650 1.21816 0.98123 1.02492 0.93696 0.93047 0.92200 0.92423 0.91437 0.89726 0.89836 0.90047 0.88710 0.91933 0.76205 0.89605 0.92389 0.91422 0.92149 0.92502 0.93560 0.78436 0.93542 0.91489 0.92743 0.90454 0.91845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.74 37.16 0.36 -1.30 16 2 C -0.13 -1.57 4.13 -26.73 -0.11 -1.68 16 3 C -0.11 -1.10 3.11 -89.06 -0.28 -1.38 16 4 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 5 C -0.15 -1.29 5.76 -24.72 -0.14 -1.43 16 6 C 0.04 0.40 7.72 38.21 0.29 0.69 16 7 O -0.35 -4.59 10.76 -54.54 -0.59 -5.17 16 8 C 0.06 0.69 3.85 -27.27 -0.10 0.59 16 9 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 10 C 0.52 7.26 5.19 -10.98 -0.06 7.21 16 11 O -0.53 -9.44 16.13 -13.75 -0.22 -9.66 16 12 N -0.72 -8.83 3.00 -53.81 -0.16 -8.99 16 13 C 0.15 1.91 2.89 -67.93 -0.20 1.71 16 14 C -0.13 -1.82 5.64 -26.73 -0.15 -1.97 16 15 C -0.13 -2.24 5.34 -26.73 -0.14 -2.38 16 16 C 0.18 3.24 2.77 -67.93 -0.19 3.05 16 17 N -0.72 -17.13 5.12 -53.43 -0.27 -17.41 16 18 C -0.24 -6.36 9.93 -15.06 -0.15 -6.51 16 19 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -27.41 13.06 55.49 0.72 -26.68 16 22 Si 0.90 22.03 29.55 -169.99 -5.02 17.01 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 C -0.12 -1.82 5.21 -26.73 -0.14 -1.96 16 27 C -0.12 -1.48 5.63 -26.73 -0.15 -1.63 16 28 H 0.05 0.50 7.35 -51.93 -0.38 0.12 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.92 7.55 -51.93 -0.39 0.53 16 32 H 0.08 1.08 3.64 -51.93 -0.19 0.89 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.78 7.78 -51.92 -0.40 0.38 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.40 4.50 6.18 -40.82 -0.25 4.25 16 38 H 0.09 1.18 7.38 -51.93 -0.38 0.80 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.06 0.94 5.25 -51.93 -0.27 0.67 16 43 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 44 H 0.38 9.59 7.80 -40.82 -0.32 9.27 16 45 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 46 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.05 0.76 6.50 -51.93 -0.34 0.42 16 48 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 370.83 15.07 5.59 5.59 Total: -1.00 -31.97 370.83 -9.59 -41.56 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -8.39 Total: 11.20 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -1.25 Total: -7.44 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: 0.29 Total: -53.08 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -0.81 Total: -14.84 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.97 -9.59 -41.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026507946.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.984 kcal (2) G-P(sol) polarization free energy of solvation -31.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds