Wall clock time and date at job start Tue Mar 31 2020 10:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47002 * 2 1 4 4 H 1.09001 * 110.54207 * 58.24422 * 3 2 1 5 5 C 1.54809 * 110.49098 * 295.62515 * 3 2 1 6 6 C 1.54995 * 102.12450 * 220.46413 * 5 3 2 7 7 O 1.44375 * 103.49049 * 37.00496 * 6 5 3 8 8 C 1.43749 * 106.97634 * 319.93561 * 7 6 5 9 9 H 1.08995 * 109.87941 * 266.93838 * 8 7 6 10 10 C 1.50702 * 109.87361 * 145.93931 * 8 7 6 11 11 O 1.21275 * 120.00361 * 348.57175 * 10 8 7 12 12 N 1.34777 * 119.99725 * 168.57518 * 10 8 7 13 13 C 1.46494 * 120.00195 * 185.00877 * 12 10 8 14 14 C 1.53000 * 109.47494 * 266.04934 * 13 12 10 15 15 C 1.53002 * 109.46970 * 300.00269 * 14 13 12 16 16 C 1.52993 * 109.47000 * 299.99413 * 15 14 13 17 17 N 1.46507 * 109.47096 * 180.02562 * 16 15 14 18 18 C 1.36934 * 119.99848 * 85.00128 * 17 16 15 19 19 H 1.07997 * 120.00310 * 0.02562 * 18 17 16 20 20 C 1.38816 * 119.99704 * 180.02562 * 18 17 16 21 21 N 1.31617 * 119.99938 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99724 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47432 * 60.00011 * 22 20 18 24 24 H 1.48504 * 109.46794 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47188 * 299.99555 * 22 20 18 26 26 C 1.52996 * 109.47213 * 60.00193 * 16 15 14 27 27 C 1.52997 * 109.47446 * 299.99986 * 26 16 15 28 28 H 1.09001 * 109.47228 * 59.99919 * 1 2 3 29 29 H 1.08998 * 109.47003 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46928 * 300.00039 * 1 2 3 31 31 H 1.09001 * 109.46928 * 239.99961 * 2 1 3 32 32 H 1.08997 * 109.46932 * 119.99695 * 2 1 3 33 33 H 1.09003 * 110.90668 * 102.24380 * 5 3 2 34 34 H 1.09008 * 110.90588 * 338.67669 * 5 3 2 35 35 H 1.09002 * 110.61918 * 155.50719 * 6 5 3 36 36 H 1.09004 * 110.61519 * 278.34294 * 6 5 3 37 37 H 0.97006 * 119.99813 * 5.00384 * 12 10 8 38 38 H 1.09001 * 109.47063 * 26.05342 * 13 12 10 39 39 H 1.09004 * 109.46520 * 59.99937 * 14 13 12 40 40 H 1.08997 * 109.47333 * 179.97438 * 14 13 12 41 41 H 1.09001 * 109.46529 * 179.97438 * 15 14 13 42 42 H 1.09000 * 109.47198 * 59.99624 * 15 14 13 43 43 H 1.09000 * 109.47317 * 300.00138 * 16 15 14 44 44 H 0.96998 * 119.99860 * 265.00216 * 17 16 15 45 45 H 0.97001 * 119.99955 * 179.97438 * 21 20 18 46 46 H 1.08997 * 109.47283 * 180.02562 * 26 16 15 47 47 H 1.09000 * 109.47024 * 59.99765 * 26 16 15 48 48 H 1.08997 * 109.47311 * 300.00030 * 27 26 16 49 49 H 1.08995 * 109.47830 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6610 1.9821 0.8679 5 6 1.6293 2.1624 -1.3075 6 6 2.9035 2.9783 -1.6439 7 8 3.9796 2.0993 -1.2519 8 6 3.5812 1.4708 -0.0220 9 1 3.9562 2.0442 0.8257 10 6 4.1197 0.0643 0.0325 11 8 4.5996 -0.4402 -0.9604 12 7 4.0680 -0.6329 1.1848 13 6 4.6890 -1.9570 1.2683 14 6 3.6414 -3.0315 0.9702 15 6 2.5068 -2.9349 1.9921 16 6 3.0685 -3.1470 3.3993 17 7 1.9820 -3.0551 4.3778 18 6 1.2186 -4.1567 4.6587 19 1 1.4177 -5.0933 4.1593 20 6 0.1888 -4.0695 5.5855 21 7 -0.0535 -2.9281 6.1945 22 14 -0.8530 -5.5720 5.9681 23 1 0.0150 -6.6545 6.4971 24 1 -1.8780 -5.2182 6.9828 25 1 -1.5247 -6.0375 4.7281 26 6 4.1162 -2.0726 3.6975 27 6 5.2508 -2.1691 2.6756 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.7785 2.8222 -1.1375 34 1 1.4093 1.4422 -2.0956 35 1 2.9519 3.1918 -2.7117 36 1 2.9305 3.9030 -1.0673 37 1 3.6196 -0.2578 1.9589 38 1 5.4974 -2.0258 0.5403 39 1 3.2412 -2.8804 -0.0324 40 1 4.1035 -4.0167 1.0319 41 1 1.7602 -3.7001 1.7794 42 1 2.0447 -1.9496 1.9300 43 1 3.5306 -4.1322 3.4614 44 1 1.8034 -2.2140 4.8266 45 1 -0.7734 -2.8671 6.8418 46 1 4.5167 -2.2240 4.6998 47 1 3.6541 -1.0874 3.6353 48 1 5.7129 -3.1543 2.7377 49 1 5.9970 -1.4035 2.8877 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026507946.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:36 Heat of formation + Delta-G solvation = -107.041178 kcal Electronic energy + Delta-G solvation = -27801.133016 eV Core-core repulsion = 24147.748915 eV Total energy + Delta-G solvation = -3653.384101 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.89034 -40.21756 -38.77512 -36.30639 -35.76011 -34.23446 -32.54310 -31.70414 -31.24471 -30.39875 -28.92370 -25.66966 -24.92092 -23.91775 -23.45847 -22.58438 -22.22558 -21.03893 -20.11024 -19.05772 -18.33751 -17.71487 -17.12920 -16.93205 -16.41339 -16.04758 -15.91738 -15.67671 -15.41882 -15.21584 -14.94243 -14.73281 -14.49097 -14.33251 -13.87818 -13.65425 -13.45166 -13.09888 -13.08977 -13.04434 -12.80218 -12.77317 -12.62480 -12.21624 -12.19024 -12.08697 -12.04384 -11.95920 -11.77121 -11.64181 -11.43460 -11.26381 -11.10253 -11.06245 -10.78590 -10.44859 -9.94634 -8.94153 -7.90937 -5.17235 1.48254 1.49456 1.55431 1.57684 2.00432 2.58243 3.06009 3.37301 3.42293 3.60984 3.70735 3.76305 3.89677 3.92685 4.00509 4.16412 4.27386 4.32387 4.34265 4.39073 4.40668 4.44213 4.49390 4.61429 4.67159 4.70772 4.71721 4.80807 4.84467 4.86222 4.97339 5.04308 5.08399 5.11161 5.14424 5.18187 5.21284 5.30319 5.33475 5.38205 5.51778 5.58545 5.60624 5.71233 5.80973 6.32365 6.55433 7.24221 7.38914 8.16837 8.39702 9.32016 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.017039 B = 0.003844 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.855946 B = 7282.982879 C = 8244.123522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.129 4.129 3 C -0.107 4.107 4 H 0.118 0.882 5 C -0.144 4.144 6 C 0.040 3.960 7 O -0.382 6.382 8 C 0.059 3.941 9 H 0.117 0.883 10 C 0.519 3.481 11 O -0.573 6.573 12 N -0.708 5.708 13 C 0.151 3.849 14 C -0.119 4.119 15 C -0.120 4.120 16 C 0.173 3.827 17 N -0.734 5.734 18 C -0.235 4.235 19 H 0.069 0.931 20 C -0.071 4.071 21 N -0.966 5.966 22 Si 0.962 3.038 23 H -0.280 1.280 24 H -0.296 1.296 25 H -0.283 1.283 26 C -0.115 4.115 27 C -0.110 4.110 28 H 0.067 0.933 29 H 0.040 0.960 30 H 0.062 0.938 31 H 0.042 0.958 32 H 0.072 0.928 33 H 0.109 0.891 34 H 0.067 0.933 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.409 0.591 38 H 0.084 0.916 39 H 0.047 0.953 40 H 0.076 0.924 41 H 0.031 0.969 42 H 0.057 0.943 43 H 0.037 0.963 44 H 0.374 0.626 45 H 0.249 0.751 46 H 0.062 0.938 47 H 0.063 0.937 48 H 0.087 0.913 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.926 12.423 -12.364 18.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.166 4.166 3 C -0.126 4.126 4 H 0.136 0.864 5 C -0.182 4.182 6 C -0.036 4.036 7 O -0.301 6.301 8 C -0.002 4.002 9 H 0.135 0.865 10 C 0.306 3.694 11 O -0.452 6.452 12 N -0.362 5.362 13 C 0.047 3.953 14 C -0.158 4.158 15 C -0.160 4.160 16 C 0.064 3.936 17 N -0.374 5.374 18 C -0.368 4.368 19 H 0.087 0.913 20 C -0.264 4.264 21 N -0.617 5.617 22 Si 0.792 3.208 23 H -0.207 1.207 24 H -0.222 1.222 25 H -0.209 1.209 26 C -0.153 4.153 27 C -0.149 4.149 28 H 0.086 0.914 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.090 0.910 33 H 0.128 0.872 34 H 0.085 0.915 35 H 0.121 0.879 36 H 0.104 0.896 37 H 0.247 0.753 38 H 0.102 0.898 39 H 0.066 0.934 40 H 0.095 0.905 41 H 0.050 0.950 42 H 0.076 0.924 43 H 0.055 0.945 44 H 0.206 0.794 45 H 0.058 0.942 46 H 0.081 0.919 47 H 0.082 0.918 48 H 0.105 0.895 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.433 11.848 -13.166 19.209 hybrid contribution -1.347 -0.674 0.860 1.735 sum 6.086 11.174 -12.306 17.701 Atomic orbital electron populations 1.21706 0.94526 1.01480 1.02563 1.21869 0.97329 0.95541 1.01876 1.22624 0.91312 0.97393 1.01265 0.86387 1.23233 0.99316 0.99465 0.96148 1.23858 0.84475 0.93152 1.02126 1.88948 1.41814 1.59670 1.39668 1.22926 0.96004 0.90965 0.90299 0.86536 1.20767 0.77613 0.88082 0.82895 1.90666 1.47044 1.71698 1.35803 1.46112 1.57620 1.18735 1.13746 1.20923 0.94805 0.81353 0.98253 1.21828 0.96665 0.99299 0.97982 1.22069 0.97162 1.00748 0.96069 1.20452 0.87982 0.97155 0.87966 1.42576 1.36456 1.10535 1.47804 1.19517 1.08793 0.91162 1.17279 0.91312 1.25394 1.01186 0.99349 1.00429 1.69776 1.34246 1.25706 1.31960 0.85375 0.78512 0.79635 0.77240 1.20659 1.22223 1.20900 1.21686 0.95771 0.98606 0.99245 1.21747 0.97379 1.03997 0.91737 0.91423 0.94034 0.91908 0.93965 0.90983 0.87236 0.91468 0.87935 0.89550 0.75320 0.89839 0.93427 0.90540 0.95011 0.92413 0.94470 0.79445 0.94172 0.91921 0.91814 0.89459 0.89511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 9.74 71.98 0.70 -2.45 16 2 C -0.13 -2.95 4.13 30.59 0.13 -2.83 16 3 C -0.11 -1.90 3.11 -9.78 -0.03 -1.93 16 4 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 5 C -0.14 -2.18 5.76 31.89 0.18 -2.00 16 6 C 0.04 0.62 7.72 72.66 0.56 1.18 16 7 O -0.38 -9.52 10.76 -130.51 -1.40 -10.93 16 8 C 0.06 1.26 3.85 30.24 0.12 1.37 16 9 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 10 C 0.52 14.06 5.19 87.66 0.45 14.51 16 11 O -0.57 -20.63 16.13 15.45 0.25 -20.38 16 12 N -0.71 -16.48 3.00 -442.54 -1.33 -17.81 16 13 C 0.15 3.69 2.89 44.99 0.13 3.82 16 14 C -0.12 -3.31 5.64 30.59 0.17 -3.14 16 15 C -0.12 -4.03 5.34 30.59 0.16 -3.86 16 16 C 0.17 6.23 2.77 44.99 0.12 6.36 16 17 N -0.73 -34.84 5.12 -322.94 -1.65 -36.49 16 18 C -0.24 -12.69 9.93 84.04 0.83 -11.86 16 19 H 0.07 3.63 7.83 -2.91 -0.02 3.61 16 20 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 21 N -0.97 -57.24 13.06 21.65 0.28 -56.96 16 22 Si 0.96 45.51 29.55 68.60 2.03 47.54 16 23 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 24 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 25 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 26 C -0.11 -3.16 5.21 30.59 0.16 -3.00 16 27 C -0.11 -2.38 5.63 30.60 0.17 -2.20 16 28 H 0.07 1.22 7.35 -2.39 -0.02 1.20 16 29 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.04 1.18 7.55 -2.39 -0.02 1.16 16 32 H 0.07 1.80 3.64 -2.39 -0.01 1.80 16 33 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.07 1.21 7.78 -2.38 -0.02 1.19 16 35 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.41 8.39 6.18 -92.70 -0.57 7.82 16 38 H 0.08 2.19 7.38 -2.39 -0.02 2.17 16 39 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 40 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.06 1.91 5.25 -2.39 -0.01 1.90 16 43 H 0.04 1.42 8.08 -2.39 -0.02 1.40 16 44 H 0.37 18.85 7.80 -92.71 -0.72 18.13 16 45 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 46 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 47 H 0.06 1.64 6.50 -2.39 -0.02 1.63 16 48 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 49 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -70.10 370.83 2.16 -67.94 By element: Atomic # 1 Polarization: 36.98 SS G_CDS: -0.35 Total: 36.63 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: 4.34 Total: -9.54 kcal Atomic # 7 Polarization: -108.56 SS G_CDS: -2.70 Total: -111.26 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -1.16 Total: -31.31 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -70.10 2.16 -67.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026507946.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.104 kcal (2) G-P(sol) polarization free energy of solvation -70.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds