Wall clock time and date at job start Tue Mar 31 2020 10:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46928 * 2 1 4 4 H 1.08995 * 110.35093 * 52.85400 * 3 2 1 5 5 O 1.43641 * 110.30527 * 290.70868 * 3 2 1 6 6 C 1.43249 * 109.96917 * 216.65809 * 5 3 2 7 7 C 1.54381 * 107.58663 * 1.71510 * 6 5 3 8 8 C 1.54948 * 110.30454 * 174.99734 * 3 2 1 9 9 H 1.08993 * 111.12863 * 37.40346 * 8 3 2 10 10 C 1.50692 * 111.12504 * 273.27438 * 8 3 2 11 11 O 1.21280 * 120.00402 * 0.02562 * 10 8 3 12 12 N 1.34777 * 120.00000 * 180.02562 * 10 8 3 13 13 C 1.46505 * 119.99947 * 180.02562 * 12 10 8 14 14 C 1.53007 * 109.46791 * 155.00000 * 13 12 10 15 15 C 1.53004 * 109.46632 * 179.97438 * 14 13 12 16 16 C 1.52998 * 109.47317 * 300.00015 * 15 14 13 17 17 N 1.46497 * 109.47207 * 180.02562 * 16 15 14 18 18 C 1.36935 * 120.00298 * 154.99864 * 17 16 15 19 19 H 1.08003 * 119.99995 * 359.97438 * 18 17 16 20 20 C 1.38809 * 120.00267 * 179.97438 * 18 17 16 21 21 N 1.31617 * 120.00268 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00127 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46845 * 60.00531 * 22 20 18 24 24 H 1.48503 * 109.47399 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47295 * 300.00628 * 22 20 18 26 26 C 1.52995 * 109.47247 * 60.00070 * 16 15 14 27 27 C 1.52997 * 109.46852 * 274.99747 * 13 12 10 28 28 H 1.09001 * 109.47053 * 60.00295 * 1 2 3 29 29 H 1.08999 * 109.47061 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47123 * 300.00304 * 1 2 3 31 31 H 1.08997 * 109.47123 * 239.99696 * 2 1 3 32 32 H 1.09001 * 109.47053 * 119.99705 * 2 1 3 33 33 H 1.08990 * 109.83044 * 121.22926 * 6 5 3 34 34 H 1.09004 * 109.82459 * 242.20189 * 6 5 3 35 35 H 1.09004 * 110.84251 * 263.16869 * 7 6 5 36 36 H 1.09000 * 110.84679 * 139.55231 * 7 6 5 37 37 H 0.96997 * 120.00035 * 0.02562 * 12 10 8 38 38 H 1.08994 * 109.47329 * 34.99844 * 13 12 10 39 39 H 1.08998 * 109.47264 * 60.00315 * 14 13 12 40 40 H 1.08992 * 109.47132 * 299.99943 * 14 13 12 41 41 H 1.09004 * 109.46689 * 180.02562 * 15 14 13 42 42 H 1.08998 * 109.46938 * 60.00238 * 15 14 13 43 43 H 1.09007 * 109.47095 * 300.00190 * 16 15 14 44 44 H 0.96992 * 120.00013 * 334.99763 * 17 16 15 45 45 H 0.97000 * 119.99327 * 359.97438 * 21 20 18 46 46 H 1.08998 * 109.47027 * 59.99765 * 26 16 15 47 47 H 1.09005 * 109.47352 * 180.02562 * 26 16 15 48 48 H 1.08998 * 109.47650 * 299.99958 * 27 13 12 49 49 H 1.08994 * 109.47602 * 60.00611 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5845 2.0056 0.8146 5 8 1.7570 2.0713 -1.2601 6 6 2.8321 2.9457 -1.6229 7 6 3.9116 2.8384 -0.5245 8 6 3.5841 1.4670 0.1267 9 1 4.0371 0.6481 -0.4319 10 6 4.0110 1.4361 1.5716 11 8 3.1757 1.3971 2.4501 12 7 5.3211 1.4518 1.8877 13 6 5.7361 1.4212 3.2924 14 6 7.1455 0.8345 3.3950 15 6 7.5792 0.8032 4.8619 16 6 7.5766 2.2258 5.4251 17 7 7.9924 2.1958 6.8295 18 6 8.5548 3.3059 7.4009 19 1 8.6923 4.2034 6.8161 20 6 8.9483 3.2776 8.7318 21 7 8.7814 2.1837 9.4444 22 14 9.7162 4.7917 9.5111 23 1 8.7567 5.9232 9.4447 24 1 10.0463 4.5047 10.9302 25 1 10.9565 5.1509 8.7777 26 6 6.1673 2.8124 5.3224 27 6 5.7334 2.8436 3.8560 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.2493 2.6404 -2.5824 34 1 2.4691 3.9716 -1.6858 35 1 3.8091 3.6463 0.2001 36 1 4.9102 2.8319 -0.9613 37 1 5.9891 1.4833 1.1851 38 1 5.0428 0.8031 3.8627 39 1 7.8388 1.4527 2.8247 40 1 7.1474 -0.1787 2.9934 41 1 8.5834 0.3857 4.9350 42 1 6.8859 0.1853 5.4326 43 1 8.2699 2.8437 4.8544 44 1 7.8693 1.3897 7.3546 45 1 8.3830 1.3974 9.0396 46 1 5.4741 2.1944 5.8930 47 1 6.1656 3.8261 5.7232 48 1 6.4267 3.4618 3.2857 49 1 4.7295 3.2615 3.7829 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026532043.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:48 Heat of formation + Delta-G solvation = -100.380914 kcal Electronic energy + Delta-G solvation = -26372.054693 eV Core-core repulsion = 22718.959402 eV Total energy + Delta-G solvation = -3653.095291 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.83160 -39.26891 -37.88942 -35.08974 -33.85343 -33.47244 -32.56575 -30.52580 -30.48099 -28.80625 -27.19211 -24.40935 -23.46845 -22.88609 -22.40573 -21.38853 -20.96406 -20.37884 -19.54635 -17.95627 -17.22547 -16.84638 -16.22346 -15.84323 -15.35047 -15.07011 -14.94601 -14.22735 -13.96295 -13.89977 -13.86757 -13.66366 -13.56364 -13.41345 -13.32248 -12.65656 -12.61085 -12.16202 -12.09144 -11.90527 -11.79397 -11.40943 -11.31921 -11.16575 -11.12280 -10.97430 -10.85217 -10.74928 -10.48619 -10.19952 -10.02759 -9.98034 -9.91974 -9.75145 -9.16694 -9.05520 -8.86972 -7.02411 -6.09097 -3.08724 2.39509 2.90382 3.41321 3.51534 3.55180 3.72670 3.99547 4.23032 4.33453 4.63102 4.67271 4.74197 4.76618 4.86999 4.89361 4.94457 5.03661 5.14713 5.16189 5.29505 5.33046 5.48501 5.49228 5.50649 5.58888 5.60054 5.63793 5.65231 5.75117 5.76991 5.77421 5.92359 5.93908 6.07144 6.12238 6.16277 6.19259 6.35374 6.45292 6.52112 6.62353 6.66805 6.89403 7.05238 7.32175 7.81697 8.03261 8.76812 9.24446 10.10745 10.25902 11.39431 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.028518 B = 0.002411 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.590437 B =11612.811836 C =11817.807792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C 0.101 3.899 4 H 0.087 0.913 5 O -0.377 6.377 6 C 0.053 3.947 7 C -0.145 4.145 8 C -0.146 4.146 9 H 0.111 0.889 10 C 0.524 3.476 11 O -0.532 6.532 12 N -0.722 5.722 13 C 0.145 3.855 14 C -0.118 4.118 15 C -0.122 4.122 16 C 0.183 3.817 17 N -0.737 5.737 18 C -0.329 4.329 19 H 0.063 0.937 20 C -0.047 4.047 21 N -0.945 5.945 22 Si 1.079 2.921 23 H -0.296 1.296 24 H -0.285 1.285 25 H -0.296 1.296 26 C -0.131 4.131 27 C -0.123 4.123 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.398 0.602 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.047 0.953 44 H 0.366 0.634 45 H 0.255 0.745 46 H 0.055 0.945 47 H 0.064 0.936 48 H 0.058 0.942 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.195 -2.974 -25.051 27.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C 0.043 3.957 4 H 0.105 0.895 5 O -0.297 6.297 6 C -0.023 4.023 7 C -0.183 4.183 8 C -0.168 4.168 9 H 0.129 0.871 10 C 0.310 3.690 11 O -0.408 6.408 12 N -0.373 5.373 13 C 0.041 3.959 14 C -0.157 4.157 15 C -0.161 4.161 16 C 0.073 3.927 17 N -0.379 5.379 18 C -0.460 4.460 19 H 0.081 0.919 20 C -0.244 4.244 21 N -0.590 5.590 22 Si 0.910 3.090 23 H -0.223 1.223 24 H -0.210 1.210 25 H -0.223 1.223 26 C -0.173 4.173 27 C -0.162 4.162 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.108 0.892 37 H 0.231 0.769 38 H 0.106 0.894 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.199 0.801 45 H 0.066 0.934 46 H 0.074 0.926 47 H 0.082 0.918 48 H 0.077 0.923 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.278 -2.212 -23.208 25.478 hybrid contribution -0.085 -0.677 -1.561 1.703 sum -10.363 -2.888 -24.768 27.004 Atomic orbital electron populations 1.21693 0.95009 1.01554 1.02287 1.21645 0.97199 0.94338 1.02531 1.22872 0.91183 0.94917 0.86693 0.89502 1.88432 1.42463 1.60524 1.38285 1.23084 0.87056 0.94799 0.97399 1.23113 1.00660 0.96049 0.98486 1.23082 0.98890 1.00208 0.94613 0.87076 1.20086 0.82753 0.76076 0.90132 1.90739 1.51313 1.48930 1.49819 1.46160 1.06885 1.74988 1.09228 1.21126 0.96373 0.97873 0.80524 1.21736 0.94936 1.00534 0.98447 1.21770 1.01418 0.99116 0.93757 1.20166 0.92904 0.92934 0.86680 1.42437 1.74174 1.14254 1.07012 1.20026 1.36650 0.92540 0.96782 0.91855 1.25755 1.01393 1.04013 0.93238 1.70879 1.47121 1.02849 1.38169 0.83256 0.75644 0.73864 0.76248 1.22304 1.21045 1.22317 1.22195 0.99541 1.02265 0.93253 1.21875 1.01083 0.95460 0.97774 0.92193 0.92762 0.92558 0.91477 0.90426 0.91016 0.91085 0.89810 0.89155 0.76872 0.89440 0.91526 0.91822 0.91422 0.92086 0.93524 0.80068 0.93385 0.92648 0.91751 0.92304 0.92355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.85 37.16 0.37 -0.93 16 2 C -0.12 -1.09 5.66 -26.73 -0.15 -1.24 16 3 C 0.10 1.00 2.55 -25.70 -0.07 0.93 16 4 H 0.09 1.04 7.38 -51.93 -0.38 0.66 16 5 O -0.38 -3.77 10.81 -35.23 -0.38 -4.15 16 6 C 0.05 0.38 7.79 37.88 0.30 0.67 16 7 C -0.15 -0.96 6.49 -24.78 -0.16 -1.12 16 8 C -0.15 -1.21 2.90 -89.52 -0.26 -1.47 16 9 H 0.11 0.72 8.05 -51.93 -0.42 0.30 16 10 C 0.52 5.88 7.12 -10.99 -0.08 5.80 16 11 O -0.53 -8.19 15.38 5.56 0.09 -8.11 16 12 N -0.72 -7.12 5.08 -53.81 -0.27 -7.40 16 13 C 0.14 1.83 2.46 -67.93 -0.17 1.66 16 14 C -0.12 -1.40 5.39 -26.73 -0.14 -1.54 16 15 C -0.12 -1.91 5.39 -26.73 -0.14 -2.05 16 16 C 0.18 3.56 2.77 -67.94 -0.19 3.37 16 17 N -0.74 -18.37 5.12 -53.43 -0.27 -18.64 16 18 C -0.33 -9.24 9.93 -15.06 -0.15 -9.38 16 19 H 0.06 1.75 7.83 -52.48 -0.41 1.34 16 20 C -0.05 -1.36 5.50 -17.43 -0.10 -1.45 16 21 N -0.94 -29.38 13.70 55.49 0.76 -28.62 16 22 Si 1.08 26.05 29.92 -169.99 -5.09 20.96 16 23 H -0.30 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.30 -6.79 7.11 56.52 0.40 -6.39 16 26 C -0.13 -2.40 5.50 -26.76 -0.15 -2.54 16 27 C -0.12 -1.78 5.49 -26.75 -0.15 -1.93 16 28 H 0.06 0.53 7.99 -51.93 -0.42 0.12 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.64 8.03 -51.93 -0.42 0.22 16 36 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.40 2.73 8.60 -40.82 -0.35 2.38 16 38 H 0.09 1.30 7.58 -51.93 -0.39 0.91 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 44 H 0.37 9.45 6.63 -40.82 -0.27 9.18 16 45 H 0.25 7.80 6.77 -40.82 -0.28 7.52 16 46 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 48 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 49 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 385.18 15.07 5.80 5.80 Total: -1.00 -33.52 385.18 -9.49 -43.01 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -8.89 Total: 8.37 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -1.24 Total: -11.22 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: 0.21 Total: -54.67 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: -0.30 Total: -12.26 kcal Atomic # 14 Polarization: 26.05 SS G_CDS: -5.09 Total: 20.96 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.52 -9.49 -43.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026532043.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.369 kcal (2) G-P(sol) polarization free energy of solvation -33.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds