Wall clock time and date at job start Tue Mar 31 2020 10:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46928 * 2 1 4 4 H 1.08995 * 110.35093 * 52.85400 * 3 2 1 5 5 O 1.43641 * 110.30527 * 290.70868 * 3 2 1 6 6 C 1.43249 * 109.96917 * 216.65809 * 5 3 2 7 7 C 1.54381 * 107.58663 * 1.71510 * 6 5 3 8 8 C 1.54948 * 110.30454 * 174.99734 * 3 2 1 9 9 H 1.08993 * 111.12863 * 37.40346 * 8 3 2 10 10 C 1.50692 * 111.12504 * 273.27438 * 8 3 2 11 11 O 1.21280 * 120.00402 * 0.02562 * 10 8 3 12 12 N 1.34777 * 120.00000 * 180.02562 * 10 8 3 13 13 C 1.46505 * 119.99947 * 180.02562 * 12 10 8 14 14 C 1.53007 * 109.46791 * 155.00000 * 13 12 10 15 15 C 1.53004 * 109.46632 * 179.97438 * 14 13 12 16 16 C 1.52998 * 109.47317 * 300.00015 * 15 14 13 17 17 N 1.46497 * 109.47207 * 180.02562 * 16 15 14 18 18 C 1.36935 * 120.00298 * 154.99864 * 17 16 15 19 19 H 1.08003 * 119.99995 * 359.97438 * 18 17 16 20 20 C 1.38809 * 120.00267 * 179.97438 * 18 17 16 21 21 N 1.31617 * 120.00268 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00127 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46845 * 60.00531 * 22 20 18 24 24 H 1.48503 * 109.47399 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47295 * 300.00628 * 22 20 18 26 26 C 1.52995 * 109.47247 * 60.00070 * 16 15 14 27 27 C 1.52997 * 109.46852 * 274.99747 * 13 12 10 28 28 H 1.09001 * 109.47053 * 60.00295 * 1 2 3 29 29 H 1.08999 * 109.47061 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47123 * 300.00304 * 1 2 3 31 31 H 1.08997 * 109.47123 * 239.99696 * 2 1 3 32 32 H 1.09001 * 109.47053 * 119.99705 * 2 1 3 33 33 H 1.08990 * 109.83044 * 121.22926 * 6 5 3 34 34 H 1.09004 * 109.82459 * 242.20189 * 6 5 3 35 35 H 1.09004 * 110.84251 * 263.16869 * 7 6 5 36 36 H 1.09000 * 110.84679 * 139.55231 * 7 6 5 37 37 H 0.96997 * 120.00035 * 0.02562 * 12 10 8 38 38 H 1.08994 * 109.47329 * 34.99844 * 13 12 10 39 39 H 1.08998 * 109.47264 * 60.00315 * 14 13 12 40 40 H 1.08992 * 109.47132 * 299.99943 * 14 13 12 41 41 H 1.09004 * 109.46689 * 180.02562 * 15 14 13 42 42 H 1.08998 * 109.46938 * 60.00238 * 15 14 13 43 43 H 1.09007 * 109.47095 * 300.00190 * 16 15 14 44 44 H 0.96992 * 120.00013 * 334.99763 * 17 16 15 45 45 H 0.97000 * 119.99327 * 359.97438 * 21 20 18 46 46 H 1.08998 * 109.47027 * 59.99765 * 26 16 15 47 47 H 1.09005 * 109.47352 * 180.02562 * 26 16 15 48 48 H 1.08998 * 109.47650 * 299.99958 * 27 13 12 49 49 H 1.08994 * 109.47602 * 60.00611 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5845 2.0056 0.8146 5 8 1.7570 2.0713 -1.2601 6 6 2.8321 2.9457 -1.6229 7 6 3.9116 2.8384 -0.5245 8 6 3.5841 1.4670 0.1267 9 1 4.0371 0.6481 -0.4319 10 6 4.0110 1.4361 1.5716 11 8 3.1757 1.3971 2.4501 12 7 5.3211 1.4518 1.8877 13 6 5.7361 1.4212 3.2924 14 6 7.1455 0.8345 3.3950 15 6 7.5792 0.8032 4.8619 16 6 7.5766 2.2258 5.4251 17 7 7.9924 2.1958 6.8295 18 6 8.5548 3.3059 7.4009 19 1 8.6923 4.2034 6.8161 20 6 8.9483 3.2776 8.7318 21 7 8.7814 2.1837 9.4444 22 14 9.7162 4.7917 9.5111 23 1 8.7567 5.9232 9.4447 24 1 10.0463 4.5047 10.9302 25 1 10.9565 5.1509 8.7777 26 6 6.1673 2.8124 5.3224 27 6 5.7334 2.8436 3.8560 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.2493 2.6404 -2.5824 34 1 2.4691 3.9716 -1.6858 35 1 3.8091 3.6463 0.2001 36 1 4.9102 2.8319 -0.9613 37 1 5.9891 1.4833 1.1851 38 1 5.0428 0.8031 3.8627 39 1 7.8388 1.4527 2.8247 40 1 7.1474 -0.1787 2.9934 41 1 8.5834 0.3857 4.9350 42 1 6.8859 0.1853 5.4326 43 1 8.2699 2.8437 4.8544 44 1 7.8693 1.3897 7.3546 45 1 8.3830 1.3974 9.0396 46 1 5.4741 2.1944 5.8930 47 1 6.1656 3.8261 5.7232 48 1 6.4267 3.4618 3.2857 49 1 4.7295 3.2615 3.7829 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026532043.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:47 Heat of formation + Delta-G solvation = -123.153964 kcal Electronic energy + Delta-G solvation = -26373.042207 eV Core-core repulsion = 22718.959402 eV Total energy + Delta-G solvation = -3654.082804 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.66309 -40.23119 -39.07471 -36.62972 -34.93656 -34.51393 -33.47983 -32.12103 -31.78808 -29.54245 -28.65568 -25.73583 -24.90581 -23.77762 -23.58189 -22.50040 -21.81022 -21.36187 -20.80284 -19.37295 -18.69223 -17.65991 -17.13286 -17.07886 -16.40467 -16.02379 -15.95610 -15.75453 -15.38387 -15.18007 -15.06647 -14.87489 -14.45959 -14.34273 -14.08222 -13.92583 -13.61552 -13.23198 -13.17457 -13.05306 -12.73533 -12.70965 -12.45899 -12.36464 -12.26000 -12.11331 -11.93740 -11.87548 -11.80031 -11.65643 -11.53796 -11.49633 -11.14089 -10.92228 -10.82793 -10.47520 -10.09384 -9.11808 -8.38942 -5.32368 1.52827 1.56881 1.67071 1.83233 2.03267 2.71051 2.76221 3.37370 3.39507 3.55836 3.59897 3.68921 3.75404 3.80084 4.06289 4.13937 4.17732 4.18877 4.21057 4.27930 4.28777 4.40155 4.44918 4.50062 4.50466 4.56230 4.76318 4.77488 4.81355 4.84588 4.88732 4.96046 5.03431 5.05525 5.05787 5.07001 5.15395 5.18125 5.23633 5.35444 5.42261 5.45890 5.53370 5.61161 6.02325 6.49786 6.52451 7.10725 7.21499 8.01166 8.12687 9.13191 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.028518 B = 0.002411 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.590437 B =11612.811836 C =11817.807792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C 0.099 3.901 4 H 0.055 0.945 5 O -0.394 6.394 6 C 0.046 3.954 7 C -0.138 4.138 8 C -0.137 4.137 9 H 0.141 0.859 10 C 0.523 3.477 11 O -0.580 6.580 12 N -0.705 5.705 13 C 0.153 3.847 14 C -0.104 4.104 15 C -0.115 4.115 16 C 0.178 3.822 17 N -0.752 5.752 18 C -0.326 4.326 19 H 0.066 0.934 20 C -0.109 4.109 21 N -0.978 5.978 22 Si 1.126 2.874 23 H -0.281 1.281 24 H -0.294 1.294 25 H -0.275 1.275 26 C -0.122 4.122 27 C -0.110 4.110 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.042 0.958 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.124 0.876 37 H 0.418 0.582 38 H 0.063 0.937 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.066 0.934 42 H 0.052 0.948 43 H 0.046 0.954 44 H 0.358 0.642 45 H 0.243 0.757 46 H 0.036 0.964 47 H 0.037 0.963 48 H 0.077 0.923 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.980 -2.789 -28.349 29.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C 0.041 3.959 4 H 0.073 0.927 5 O -0.314 6.314 6 C -0.030 4.030 7 C -0.176 4.176 8 C -0.158 4.158 9 H 0.159 0.841 10 C 0.310 3.690 11 O -0.459 6.459 12 N -0.357 5.357 13 C 0.048 3.952 14 C -0.142 4.142 15 C -0.153 4.153 16 C 0.070 3.930 17 N -0.393 5.393 18 C -0.457 4.457 19 H 0.084 0.916 20 C -0.300 4.300 21 N -0.626 5.626 22 Si 0.951 3.049 23 H -0.207 1.207 24 H -0.220 1.220 25 H -0.201 1.201 26 C -0.163 4.163 27 C -0.150 4.150 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.142 0.858 37 H 0.256 0.744 38 H 0.081 0.919 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.085 0.915 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.189 0.811 45 H 0.054 0.946 46 H 0.055 0.945 47 H 0.056 0.944 48 H 0.096 0.904 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.054 -2.019 -26.604 28.175 hybrid contribution -0.540 -0.710 -0.593 1.072 sum -9.595 -2.729 -27.197 28.968 Atomic orbital electron populations 1.21685 0.95139 1.02115 1.01539 1.21630 0.97191 0.94017 1.02722 1.22748 0.92402 0.94783 0.85976 0.92671 1.88416 1.44015 1.61087 1.37899 1.23313 0.86597 0.94651 0.98480 1.23144 1.02295 0.94270 0.97891 1.23057 0.97667 1.02385 0.92670 0.84142 1.20617 0.82510 0.74819 0.91018 1.90734 1.52671 1.51030 1.51490 1.45895 1.07088 1.74211 1.08460 1.20812 0.96600 0.95926 0.81855 1.21640 0.94252 1.02662 0.95688 1.21659 1.01405 0.95994 0.96292 1.20427 0.92873 0.95673 0.84043 1.42703 1.74303 1.13159 1.09165 1.20364 1.35120 0.93338 0.96922 0.91634 1.27186 1.02427 1.05901 0.94445 1.70990 1.49393 1.03473 1.38767 0.82647 0.75961 0.71247 0.75034 1.20686 1.22005 1.20066 1.22001 0.98546 0.99990 0.95802 1.21737 1.00667 0.97338 0.95234 0.92374 0.91544 0.93842 0.89862 0.91405 0.88736 0.90861 0.91197 0.85772 0.74418 0.91891 0.89250 0.89052 0.91489 0.92966 0.93593 0.81074 0.94626 0.94519 0.94444 0.90428 0.93469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.85 71.98 0.71 -1.85 16 2 C -0.12 -2.05 5.66 30.60 0.17 -1.88 16 3 C 0.10 1.88 2.55 31.26 0.08 1.96 16 4 H 0.06 1.39 7.38 -2.39 -0.02 1.37 16 5 O -0.39 -7.30 10.81 -148.98 -1.61 -8.91 16 6 C 0.05 0.53 7.79 72.45 0.56 1.09 16 7 C -0.14 -1.38 6.49 31.86 0.21 -1.18 16 8 C -0.14 -1.90 2.90 -10.08 -0.03 -1.93 16 9 H 0.14 1.19 8.05 -2.39 -0.02 1.17 16 10 C 0.52 10.87 7.12 87.65 0.62 11.50 16 11 O -0.58 -18.04 15.38 -3.03 -0.05 -18.08 16 12 N -0.71 -11.77 5.08 -442.53 -2.25 -14.02 16 13 C 0.15 3.58 2.46 44.99 0.11 3.69 16 14 C -0.10 -2.12 5.39 30.60 0.16 -1.96 16 15 C -0.11 -3.46 5.39 30.59 0.16 -3.29 16 16 C 0.18 6.89 2.77 44.99 0.12 7.01 16 17 N -0.75 -38.25 5.12 -322.95 -1.65 -39.90 16 18 C -0.33 -18.48 9.93 84.03 0.83 -17.64 16 19 H 0.07 3.62 7.83 -2.91 -0.02 3.59 16 20 C -0.11 -6.41 5.50 84.86 0.47 -5.94 16 21 N -0.98 -62.28 13.70 21.65 0.30 -61.98 16 22 Si 1.13 52.58 29.92 68.60 2.05 54.63 16 23 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 24 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 26 C -0.12 -4.54 5.50 30.58 0.17 -4.37 16 27 C -0.11 -3.10 5.49 30.58 0.17 -2.93 16 28 H 0.06 1.02 7.99 -2.39 -0.02 1.00 16 29 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.30 8.14 -2.39 -0.02 1.29 16 33 H 0.09 0.68 8.14 -2.39 -0.02 0.67 16 34 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.07 0.92 8.03 -2.38 -0.02 0.90 16 36 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.42 3.73 8.60 -92.71 -0.80 2.94 16 38 H 0.06 1.84 7.58 -2.39 -0.02 1.83 16 39 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.07 2.04 8.14 -2.38 -0.02 2.03 16 42 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.05 1.80 8.08 -2.38 -0.02 1.78 16 44 H 0.36 19.13 6.63 -92.71 -0.61 18.52 16 45 H 0.24 15.45 6.77 -92.71 -0.63 14.82 16 46 H 0.04 1.46 8.14 -2.39 -0.02 1.45 16 47 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 48 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 49 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -76.10 385.18 0.98 -75.13 By element: Atomic # 1 Polarization: 31.21 SS G_CDS: -0.35 Total: 30.87 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: 4.53 Total: -17.73 kcal Atomic # 7 Polarization: -112.30 SS G_CDS: -3.60 Total: -115.90 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -1.66 Total: -26.99 kcal Atomic # 14 Polarization: 52.58 SS G_CDS: 2.05 Total: 54.63 kcal Total: -76.10 0.98 -75.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026532043.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.028 kcal (2) G-P(sol) polarization free energy of solvation -76.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds