Wall clock time and date at job start Tue Mar 31 2020 10:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36942 * 119.99735 * 2 1 4 4 H 1.07996 * 120.00102 * 204.41009 * 3 2 1 5 5 C 1.38814 * 120.00070 * 24.40779 * 3 2 1 6 6 N 1.31620 * 119.99948 * 14.16809 * 5 3 2 7 7 Si 1.86804 * 119.99978 * 194.16562 * 5 3 2 8 8 H 1.48493 * 109.46877 * 90.00161 * 7 5 3 9 9 H 1.48501 * 109.46902 * 210.00017 * 7 5 3 10 10 H 1.48495 * 109.47040 * 329.99885 * 7 5 3 11 11 C 1.46495 * 120.00390 * 179.97438 * 2 1 3 12 12 H 1.08997 * 109.50021 * 179.97438 * 11 2 1 13 13 C 1.53042 * 109.52139 * 59.85859 * 11 2 1 14 14 C 1.53045 * 109.53988 * 178.66919 * 13 11 2 15 15 C 1.52757 * 109.38231 * 61.23856 * 14 13 11 16 16 N 1.46930 * 109.00965 * 305.58850 * 15 14 13 17 17 C 1.34770 * 120.63294 * 233.58664 * 16 15 14 18 18 O 1.21284 * 120.00356 * 179.72061 * 17 16 15 19 19 C 1.50702 * 120.00027 * 359.72024 * 17 16 15 20 20 C 1.52999 * 109.47352 * 185.58987 * 19 17 16 21 21 C 1.52998 * 109.47366 * 178.17769 * 20 19 17 22 22 O 1.42897 * 109.47119 * 298.17797 * 20 19 17 23 23 C 1.53006 * 109.47041 * 58.17705 * 20 19 17 24 24 C 1.53002 * 117.51613 * 111.28515 * 23 20 19 25 25 C 1.53002 * 117.49614 * 179.91369 * 23 20 19 26 26 C 1.46924 * 118.73491 * 53.30964 * 16 15 14 27 27 H 1.08999 * 109.47133 * 270.56675 * 1 2 3 28 28 H 1.09002 * 109.46913 * 30.57550 * 1 2 3 29 29 H 1.09003 * 109.46393 * 150.56591 * 1 2 3 30 30 H 0.96995 * 119.99707 * 180.02562 * 6 5 3 31 31 H 1.09001 * 109.45943 * 298.68936 * 13 11 2 32 32 H 1.09004 * 109.46330 * 58.64907 * 13 11 2 33 33 H 1.09000 * 109.49913 * 181.31966 * 14 13 11 34 34 H 1.09000 * 109.49182 * 301.41390 * 14 13 11 35 35 H 1.08997 * 109.50766 * 185.71099 * 15 14 13 36 36 H 1.09001 * 109.43490 * 65.42481 * 15 14 13 37 37 H 1.08998 * 109.47120 * 65.58671 * 19 17 16 38 38 H 1.08998 * 109.47094 * 305.58692 * 19 17 16 39 39 H 1.09006 * 109.46985 * 304.40257 * 21 20 19 40 40 H 1.08993 * 109.47114 * 64.40038 * 21 20 19 41 41 H 1.09004 * 109.47029 * 184.40427 * 21 20 19 42 42 H 0.96698 * 114.00272 * 59.99857 * 22 20 19 43 43 H 1.09001 * 115.54788 * 325.58217 * 23 20 19 44 44 H 1.08998 * 117.49601 * 214.97131 * 24 23 20 45 45 H 1.08994 * 117.49694 * 359.97438 * 24 23 20 46 46 H 1.08996 * 117.49861 * 359.97438 * 25 23 20 47 47 H 1.08999 * 117.49573 * 144.97698 * 25 23 20 48 48 H 1.09001 * 109.58713 * 66.42986 * 26 16 15 49 49 H 1.09000 * 109.58814 * 186.71065 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1572 1.2279 -0.3865 5 6 1.5486 2.3344 0.4968 6 7 0.4492 2.2439 1.2147 7 14 2.3002 4.0083 0.1464 8 1 1.7300 4.5533 -1.1118 9 1 1.9961 4.9321 1.2686 10 1 3.7718 3.8701 0.0039 11 6 2.1976 -1.2686 0.0006 12 1 3.2693 -1.0699 0.0000 13 6 1.8261 -2.0743 -1.2465 14 6 2.6160 -3.3850 -1.2633 15 6 2.2556 -4.2099 -0.0291 16 7 2.4689 -3.3917 1.1725 17 6 3.2424 -3.8408 2.1806 18 8 3.4149 -3.1538 3.1651 19 6 3.8931 -5.1967 2.0847 20 6 4.5942 -5.5206 3.4055 21 6 5.2162 -6.9160 3.3240 22 8 5.6196 -4.5556 3.6496 23 6 3.5756 -5.4821 4.5465 24 6 3.2195 -6.8083 5.2212 25 6 4.0840 -5.7830 5.9578 26 6 1.8279 -2.0720 1.2514 27 1 -0.3633 0.0102 1.0276 28 1 -0.3633 0.8848 -0.5228 29 1 -0.3632 -0.8951 -0.5051 30 1 0.0290 3.0464 1.5615 31 1 0.7585 -2.2938 -1.2322 32 1 2.0655 -1.4946 -2.1380 33 1 2.3684 -3.9475 -2.1635 34 1 3.6838 -3.1663 -1.2525 35 1 2.8896 -5.0955 0.0146 36 1 1.2092 -4.5096 -0.0861 37 1 4.6246 -5.1923 1.2766 38 1 3.1328 -5.9511 1.8825 39 1 4.4468 -7.6419 3.0605 40 1 5.9969 -6.9220 2.5635 41 1 5.6478 -7.1784 4.2899 42 1 5.2968 -3.6463 3.7134 43 1 2.7832 -4.7405 4.4444 44 1 2.1928 -6.9393 5.5630 45 1 3.7106 -7.7085 4.8520 46 1 5.1440 -6.0089 6.0734 47 1 3.6262 -5.2393 6.7842 48 1 0.7459 -2.1938 1.3009 49 1 2.1778 -1.5485 2.1411 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027373956.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:20:27 Heat of formation + Delta-G solvation = -38.666088 kcal Electronic energy + Delta-G solvation = -27476.713289 eV Core-core repulsion = 23826.294154 eV Total energy + Delta-G solvation = -3650.419135 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.54034 -38.84967 -37.23879 -35.32326 -35.10262 -32.57425 -31.70171 -31.29134 -29.23165 -27.92830 -26.01445 -25.06070 -23.86795 -23.17439 -22.37124 -21.71291 -20.03387 -19.39110 -18.58760 -17.17523 -16.81772 -16.71409 -16.09824 -15.59556 -15.23092 -14.93246 -14.35334 -14.17991 -14.11626 -13.71860 -13.40709 -13.13500 -12.91652 -12.76345 -12.65753 -12.56008 -12.38781 -12.19908 -11.91496 -11.87805 -11.38120 -11.21601 -11.08377 -10.91329 -10.82230 -10.64645 -10.54567 -10.42303 -10.36168 -10.19521 -10.16253 -9.89172 -9.80945 -9.76196 -9.46137 -8.58767 -8.34997 -6.75482 -5.75381 -3.21608 2.74315 3.16679 3.38949 3.45268 3.46718 3.69829 4.30249 4.45120 4.47775 4.58184 4.64211 4.90167 4.92685 5.01065 5.09230 5.10675 5.26341 5.30151 5.39533 5.41528 5.45579 5.51534 5.55847 5.58613 5.71991 5.73815 5.81858 5.88487 5.88957 5.97982 6.02425 6.06485 6.10029 6.20722 6.29251 6.35168 6.47823 6.64491 6.74720 6.90923 6.96120 7.32585 7.60528 7.66067 7.80217 7.85824 8.35017 8.40535 9.21459 9.83968 10.33510 11.30302 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.018223 B = 0.003511 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.177567 B = 7972.488247 C = 8635.420807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.590 5.590 3 C -0.259 4.259 4 H 0.068 0.932 5 C 0.006 3.994 6 N -0.904 5.904 7 Si 0.905 3.095 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.169 3.831 12 H 0.064 0.936 13 C -0.134 4.134 14 C -0.132 4.132 15 C 0.107 3.893 16 N -0.603 5.603 17 C 0.513 3.487 18 O -0.544 6.544 19 C -0.167 4.167 20 C 0.180 3.820 21 C -0.142 4.142 22 O -0.563 6.563 23 C -0.179 4.179 24 C -0.187 4.187 25 C -0.165 4.165 26 C 0.097 3.903 27 H 0.024 0.976 28 H 0.046 0.954 29 H -0.001 1.001 30 H 0.253 0.747 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.390 0.610 43 H 0.116 0.884 44 H 0.090 0.910 45 H 0.098 0.902 46 H 0.095 0.905 47 H 0.091 0.909 48 H 0.060 0.940 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.356 -20.586 0.083 21.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.311 5.311 3 C -0.389 4.389 4 H 0.086 0.914 5 C -0.193 4.193 6 N -0.548 5.548 7 Si 0.735 3.265 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.059 3.941 12 H 0.082 0.918 13 C -0.173 4.173 14 C -0.170 4.170 15 C -0.017 4.017 16 N -0.336 5.336 17 C 0.302 3.698 18 O -0.424 6.424 19 C -0.207 4.207 20 C 0.139 3.861 21 C -0.199 4.199 22 O -0.374 6.374 23 C -0.197 4.197 24 C -0.224 4.224 25 C -0.202 4.202 26 C -0.026 4.026 27 H 0.042 0.958 28 H 0.065 0.935 29 H 0.018 0.982 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.244 0.756 43 H 0.134 0.866 44 H 0.108 0.892 45 H 0.116 0.884 46 H 0.113 0.887 47 H 0.109 0.891 48 H 0.078 0.922 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.683 -20.550 0.662 21.087 hybrid contribution -0.293 1.499 -0.205 1.541 sum 4.390 -19.051 0.457 19.556 Atomic orbital electron populations 1.20761 0.82752 0.96282 0.98605 1.43921 1.01743 1.00042 1.85441 1.19215 0.99393 0.85498 1.34746 0.91441 1.25052 0.98142 0.98656 0.97474 1.70065 1.21138 1.27555 1.36017 0.86250 0.78808 0.84099 0.77369 1.21474 1.21710 1.20418 1.20632 0.96490 0.86254 0.90693 0.91763 1.22083 0.99617 0.94974 1.00650 1.21831 1.01123 0.97349 0.96735 1.21667 1.01364 0.93621 0.85001 1.48332 1.48666 1.19198 1.17410 1.20563 0.78547 0.88056 0.82639 1.90592 1.61995 1.58704 1.31059 1.22475 1.01463 0.95826 1.00948 1.20223 0.86308 0.89699 0.89891 1.21872 1.01093 0.93940 1.02971 1.86367 1.35328 1.21183 1.94557 1.23188 1.02472 0.99749 0.94275 1.23123 1.00715 0.93518 1.05055 1.22781 0.99857 1.02693 0.94838 1.22557 0.96671 0.80944 1.02467 0.95761 0.93488 0.98242 0.93674 0.92269 0.91678 0.91171 0.91723 0.90315 0.91490 0.88101 0.88378 0.91007 0.91757 0.91565 0.75618 0.86590 0.89172 0.88352 0.88692 0.89083 0.92188 0.88961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.85 7.96 59.85 0.48 4.33 16 2 N -0.59 -14.50 2.81 -173.35 -0.49 -14.99 16 3 C -0.26 -7.11 9.55 -15.06 -0.14 -7.25 16 4 H 0.07 1.83 7.84 -52.49 -0.41 1.42 16 5 C 0.01 0.16 5.04 -17.43 -0.09 0.07 16 6 N -0.90 -26.37 10.90 55.49 0.60 -25.76 16 7 Si 0.90 21.98 29.58 -169.99 -5.03 16.96 16 8 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 9 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 C 0.17 3.38 2.74 -67.81 -0.19 3.19 16 12 H 0.06 1.38 7.87 -51.93 -0.41 0.97 16 13 C -0.13 -2.14 5.12 -26.69 -0.14 -2.27 16 14 C -0.13 -1.56 6.06 -26.83 -0.16 -1.72 16 15 C 0.11 1.18 6.27 -3.93 -0.02 1.16 16 16 N -0.60 -8.96 2.98 -173.03 -0.52 -9.47 16 17 C 0.51 7.62 6.96 -10.99 -0.08 7.55 16 18 O -0.54 -9.90 11.54 -12.98 -0.15 -10.05 16 19 C -0.17 -1.81 3.35 -27.88 -0.09 -1.90 16 20 C 0.18 2.10 0.92 -90.62 -0.08 2.01 16 21 C -0.14 -1.27 7.44 37.16 0.28 -1.00 16 22 O -0.56 -8.10 12.87 -53.77 -0.69 -8.79 16 23 C -0.18 -2.17 4.71 -90.61 -0.43 -2.59 16 24 C -0.19 -1.81 9.57 -26.73 -0.26 -2.06 16 25 C -0.16 -1.84 9.78 -26.73 -0.26 -2.10 16 26 C 0.10 1.84 5.79 -3.71 -0.02 1.82 16 27 H 0.02 0.63 7.57 -51.93 -0.39 0.24 16 28 H 0.05 1.22 7.16 -51.93 -0.37 0.85 16 29 H 0.00 -0.02 6.45 -51.93 -0.33 -0.35 16 30 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.06 0.95 6.71 -51.93 -0.35 0.60 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.65 5.95 -51.93 -0.31 0.34 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.10 0.98 7.93 -51.93 -0.41 0.57 16 38 H 0.10 0.84 7.67 -51.93 -0.40 0.44 16 39 H 0.07 0.50 7.28 -51.93 -0.38 0.12 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.60 6.75 -51.93 -0.35 0.25 16 42 H 0.39 6.05 6.51 45.56 0.30 6.35 16 43 H 0.12 1.71 6.11 -51.93 -0.32 1.39 16 44 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.10 0.79 5.88 -51.93 -0.31 0.49 16 46 H 0.09 1.04 7.58 -51.93 -0.39 0.65 16 47 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.06 1.16 7.52 -51.93 -0.39 0.77 16 49 H 0.09 2.08 7.00 -51.93 -0.36 1.72 16 LS Contribution 368.36 15.07 5.55 5.55 Total: -1.00 -30.94 368.36 -9.61 -40.55 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -7.68 Total: 6.77 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -1.21 Total: -0.77 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: -0.40 Total: -50.22 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.84 Total: -18.83 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.94 -9.61 -40.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027373956.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.879 kcal (2) G-P(sol) polarization free energy of solvation -30.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds