Wall clock time and date at job start Tue Mar 31 2020 10:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36942 * 119.99735 * 2 1 4 4 H 1.07996 * 120.00102 * 204.41009 * 3 2 1 5 5 C 1.38814 * 120.00070 * 24.40779 * 3 2 1 6 6 N 1.31620 * 119.99948 * 14.16809 * 5 3 2 7 7 Si 1.86804 * 119.99978 * 194.16562 * 5 3 2 8 8 H 1.48493 * 109.46877 * 90.00161 * 7 5 3 9 9 H 1.48501 * 109.46902 * 210.00017 * 7 5 3 10 10 H 1.48495 * 109.47040 * 329.99885 * 7 5 3 11 11 C 1.46495 * 120.00390 * 179.97438 * 2 1 3 12 12 H 1.08997 * 109.50021 * 179.97438 * 11 2 1 13 13 C 1.53042 * 109.52139 * 59.85859 * 11 2 1 14 14 C 1.53045 * 109.53988 * 178.66919 * 13 11 2 15 15 C 1.52757 * 109.38231 * 61.23856 * 14 13 11 16 16 N 1.46930 * 109.00965 * 305.58850 * 15 14 13 17 17 C 1.34770 * 120.63294 * 233.58664 * 16 15 14 18 18 O 1.21284 * 120.00356 * 179.72061 * 17 16 15 19 19 C 1.50702 * 120.00027 * 359.72024 * 17 16 15 20 20 C 1.52999 * 109.47352 * 185.58987 * 19 17 16 21 21 C 1.52998 * 109.47366 * 178.17769 * 20 19 17 22 22 O 1.42897 * 109.47119 * 298.17797 * 20 19 17 23 23 C 1.53006 * 109.47041 * 58.17705 * 20 19 17 24 24 C 1.53002 * 117.51613 * 111.28515 * 23 20 19 25 25 C 1.53002 * 117.49614 * 179.91369 * 23 20 19 26 26 C 1.46924 * 118.73491 * 53.30964 * 16 15 14 27 27 H 1.08999 * 109.47133 * 270.56675 * 1 2 3 28 28 H 1.09002 * 109.46913 * 30.57550 * 1 2 3 29 29 H 1.09003 * 109.46393 * 150.56591 * 1 2 3 30 30 H 0.96995 * 119.99707 * 180.02562 * 6 5 3 31 31 H 1.09001 * 109.45943 * 298.68936 * 13 11 2 32 32 H 1.09004 * 109.46330 * 58.64907 * 13 11 2 33 33 H 1.09000 * 109.49913 * 181.31966 * 14 13 11 34 34 H 1.09000 * 109.49182 * 301.41390 * 14 13 11 35 35 H 1.08997 * 109.50766 * 185.71099 * 15 14 13 36 36 H 1.09001 * 109.43490 * 65.42481 * 15 14 13 37 37 H 1.08998 * 109.47120 * 65.58671 * 19 17 16 38 38 H 1.08998 * 109.47094 * 305.58692 * 19 17 16 39 39 H 1.09006 * 109.46985 * 304.40257 * 21 20 19 40 40 H 1.08993 * 109.47114 * 64.40038 * 21 20 19 41 41 H 1.09004 * 109.47029 * 184.40427 * 21 20 19 42 42 H 0.96698 * 114.00272 * 59.99857 * 22 20 19 43 43 H 1.09001 * 115.54788 * 325.58217 * 23 20 19 44 44 H 1.08998 * 117.49601 * 214.97131 * 24 23 20 45 45 H 1.08994 * 117.49694 * 359.97438 * 24 23 20 46 46 H 1.08996 * 117.49861 * 359.97438 * 25 23 20 47 47 H 1.08999 * 117.49573 * 144.97698 * 25 23 20 48 48 H 1.09001 * 109.58713 * 66.42986 * 26 16 15 49 49 H 1.09000 * 109.58814 * 186.71065 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1572 1.2279 -0.3865 5 6 1.5486 2.3344 0.4968 6 7 0.4492 2.2439 1.2147 7 14 2.3002 4.0083 0.1464 8 1 1.7300 4.5533 -1.1118 9 1 1.9961 4.9321 1.2686 10 1 3.7718 3.8701 0.0039 11 6 2.1976 -1.2686 0.0006 12 1 3.2693 -1.0699 0.0000 13 6 1.8261 -2.0743 -1.2465 14 6 2.6160 -3.3850 -1.2633 15 6 2.2556 -4.2099 -0.0291 16 7 2.4689 -3.3917 1.1725 17 6 3.2424 -3.8408 2.1806 18 8 3.4149 -3.1538 3.1651 19 6 3.8931 -5.1967 2.0847 20 6 4.5942 -5.5206 3.4055 21 6 5.2162 -6.9160 3.3240 22 8 5.6196 -4.5556 3.6496 23 6 3.5756 -5.4821 4.5465 24 6 3.2195 -6.8083 5.2212 25 6 4.0840 -5.7830 5.9578 26 6 1.8279 -2.0720 1.2514 27 1 -0.3633 0.0102 1.0276 28 1 -0.3633 0.8848 -0.5228 29 1 -0.3632 -0.8951 -0.5051 30 1 0.0290 3.0464 1.5615 31 1 0.7585 -2.2938 -1.2322 32 1 2.0655 -1.4946 -2.1380 33 1 2.3684 -3.9475 -2.1635 34 1 3.6838 -3.1663 -1.2525 35 1 2.8896 -5.0955 0.0146 36 1 1.2092 -4.5096 -0.0861 37 1 4.6246 -5.1923 1.2766 38 1 3.1328 -5.9511 1.8825 39 1 4.4468 -7.6419 3.0605 40 1 5.9969 -6.9220 2.5635 41 1 5.6478 -7.1784 4.2899 42 1 5.2968 -3.6463 3.7134 43 1 2.7832 -4.7405 4.4444 44 1 2.1928 -6.9393 5.5630 45 1 3.7106 -7.7085 4.8520 46 1 5.1440 -6.0089 6.0734 47 1 3.6262 -5.2393 6.7842 48 1 0.7459 -2.1938 1.3009 49 1 2.1778 -1.5485 2.1411 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027373956.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:20:26 Heat of formation + Delta-G solvation = -58.104988 kcal Electronic energy + Delta-G solvation = -27477.556223 eV Core-core repulsion = 23826.294154 eV Total energy + Delta-G solvation = -3651.262069 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.65089 -39.95754 -38.55387 -36.79239 -36.24994 -34.09930 -32.84693 -32.70257 -30.69670 -28.95214 -28.06223 -26.22035 -25.34633 -24.33368 -23.20430 -23.05818 -21.29462 -20.54834 -19.83143 -18.79455 -18.24713 -17.71277 -17.16711 -17.02905 -16.57081 -16.31895 -15.78566 -15.44506 -15.28985 -15.21782 -14.70254 -14.41114 -14.23923 -14.05905 -13.81898 -13.74626 -13.47621 -13.28501 -12.98982 -12.96764 -12.86321 -12.79637 -12.50431 -12.24409 -12.16669 -12.11622 -12.09701 -11.86224 -11.74314 -11.59128 -11.47009 -11.39175 -11.04275 -10.73115 -10.65767 -10.64445 -9.67160 -8.76792 -7.88390 -5.36960 1.43177 1.43785 1.53046 1.61139 1.99973 2.48239 2.83158 3.25840 3.40756 3.50850 3.59024 3.71864 3.81238 3.99404 4.07314 4.13691 4.14155 4.14976 4.26573 4.28719 4.37692 4.55686 4.59083 4.64716 4.70128 4.74946 4.79076 4.82735 4.90260 4.93256 4.94831 5.04149 5.06246 5.09082 5.16418 5.22009 5.25855 5.26878 5.41176 5.43830 5.49876 5.55454 5.60829 5.65414 6.30044 6.47156 6.72839 7.11072 7.21908 7.82931 8.26352 9.15174 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.018223 B = 0.003511 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.177567 B = 7972.488247 C = 8635.420807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.608 5.608 3 C -0.269 4.269 4 H 0.065 0.935 5 C -0.049 4.049 6 N -0.936 5.936 7 Si 0.968 3.032 8 H -0.281 1.281 9 H -0.295 1.295 10 H -0.271 1.271 11 C 0.167 3.833 12 H 0.042 0.958 13 C -0.124 4.124 14 C -0.123 4.123 15 C 0.101 3.899 16 N -0.605 5.605 17 C 0.505 3.495 18 O -0.587 6.587 19 C -0.155 4.155 20 C 0.171 3.829 21 C -0.138 4.138 22 O -0.579 6.579 23 C -0.196 4.196 24 C -0.159 4.159 25 C -0.178 4.178 26 C 0.115 3.885 27 H -0.006 1.006 28 H 0.019 0.981 29 H 0.036 0.964 30 H 0.249 0.751 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.109 0.891 34 H 0.061 0.939 35 H 0.121 0.879 36 H 0.083 0.917 37 H 0.122 0.878 38 H 0.134 0.866 39 H 0.101 0.899 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.380 0.620 43 H 0.082 0.918 44 H 0.096 0.904 45 H 0.124 0.876 46 H 0.096 0.904 47 H 0.082 0.918 48 H 0.054 0.946 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.069 -24.304 -1.826 24.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.330 5.330 3 C -0.399 4.399 4 H 0.083 0.917 5 C -0.244 4.244 6 N -0.582 5.582 7 Si 0.796 3.204 8 H -0.207 1.207 9 H -0.222 1.222 10 H -0.196 1.196 11 C 0.059 3.941 12 H 0.060 0.940 13 C -0.163 4.163 14 C -0.162 4.162 15 C -0.020 4.020 16 N -0.337 5.337 17 C 0.295 3.705 18 O -0.469 6.469 19 C -0.194 4.194 20 C 0.130 3.870 21 C -0.195 4.195 22 O -0.390 6.390 23 C -0.214 4.214 24 C -0.195 4.195 25 C -0.215 4.215 26 C -0.010 4.010 27 H 0.012 0.988 28 H 0.038 0.962 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.128 0.872 34 H 0.080 0.920 35 H 0.139 0.861 36 H 0.101 0.899 37 H 0.140 0.860 38 H 0.152 0.848 39 H 0.119 0.881 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.232 0.768 43 H 0.100 0.900 44 H 0.114 0.886 45 H 0.142 0.858 46 H 0.114 0.886 47 H 0.101 0.899 48 H 0.073 0.927 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 5.419 -24.339 -1.283 24.968 hybrid contribution -0.491 2.608 0.433 2.689 sum 4.928 -21.731 -0.850 22.299 Atomic orbital electron populations 1.20468 0.82687 0.96638 0.96796 1.44147 1.02088 1.01044 1.85746 1.19517 0.99423 0.87027 1.33944 0.91707 1.25807 0.98874 1.02001 0.97751 1.70226 1.22568 1.27959 1.37398 0.85259 0.78358 0.79804 0.76995 1.20741 1.22186 1.19576 1.20789 0.94738 0.85288 0.93297 0.93973 1.21925 1.00570 0.96486 0.97299 1.21819 1.00132 0.95283 0.98928 1.22048 1.03488 0.94001 0.82475 1.48367 1.48344 1.17802 1.19161 1.21444 0.77913 0.89374 0.81724 1.90588 1.63204 1.60256 1.32872 1.22514 1.02323 0.93404 1.01177 1.20566 0.85960 0.90473 0.89978 1.21913 1.02040 0.92290 1.03246 1.86355 1.36821 1.21002 1.94780 1.23062 1.02319 1.00881 0.95148 1.23230 1.00832 0.93023 1.02439 1.22810 1.00330 1.04029 0.94336 1.21912 0.96271 0.83177 0.99650 0.98766 0.96175 0.94534 0.94199 0.91849 0.92634 0.87249 0.91994 0.86096 0.89851 0.85998 0.84813 0.88064 0.91106 0.91794 0.76822 0.89952 0.88576 0.85797 0.88551 0.89944 0.92747 0.93873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.86 7.96 127.77 1.02 9.88 16 2 N -0.61 -30.91 2.81 -702.35 -1.97 -32.89 16 3 C -0.27 -15.27 9.55 84.03 0.80 -14.47 16 4 H 0.07 3.63 7.84 -2.91 -0.02 3.60 16 5 C -0.05 -2.81 5.04 84.86 0.43 -2.38 16 6 N -0.94 -56.96 10.90 21.65 0.24 -56.72 16 7 Si 0.97 46.43 29.58 68.60 2.03 48.46 16 8 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 9 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 11 C 0.17 6.80 2.74 45.07 0.12 6.93 16 12 H 0.04 1.87 7.87 -2.39 -0.02 1.85 16 13 C -0.12 -3.73 5.12 30.62 0.16 -3.57 16 14 C -0.12 -2.43 6.06 30.53 0.19 -2.25 16 15 C 0.10 1.80 6.27 86.22 0.54 2.34 16 16 N -0.60 -17.25 2.98 -819.75 -2.44 -19.69 16 17 C 0.50 14.68 6.96 87.66 0.61 15.29 16 18 O -0.59 -22.53 11.54 14.68 0.17 -22.36 16 19 C -0.15 -2.83 3.35 29.85 0.10 -2.73 16 20 C 0.17 3.64 0.92 -10.79 -0.01 3.63 16 21 C -0.14 -1.94 7.44 71.98 0.54 -1.40 16 22 O -0.58 -16.59 12.87 -131.26 -1.69 -18.28 16 23 C -0.20 -4.60 4.71 -10.79 -0.05 -4.65 16 24 C -0.16 -2.66 9.57 30.60 0.29 -2.36 16 25 C -0.18 -3.90 9.78 30.60 0.30 -3.60 16 26 C 0.12 4.52 5.79 86.36 0.50 5.02 16 27 H -0.01 -0.33 7.57 -2.39 -0.02 -0.35 16 28 H 0.02 1.06 7.16 -2.39 -0.02 1.05 16 29 H 0.04 1.50 6.45 -2.39 -0.02 1.48 16 30 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 31 H 0.06 1.86 6.71 -2.39 -0.02 1.85 16 32 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 33 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.12 1.22 5.95 -2.39 -0.01 1.21 16 36 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.12 1.79 7.93 -2.39 -0.02 1.78 16 38 H 0.13 1.53 7.67 -2.39 -0.02 1.51 16 39 H 0.10 0.83 7.28 -2.38 -0.02 0.81 16 40 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.06 0.95 6.75 -2.39 -0.02 0.93 16 42 H 0.38 12.43 6.51 -74.06 -0.48 11.95 16 43 H 0.08 2.52 6.11 -2.39 -0.01 2.50 16 44 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.12 1.45 5.88 -2.39 -0.01 1.43 16 46 H 0.10 2.06 7.58 -2.39 -0.02 2.04 16 47 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 48 H 0.05 2.16 7.52 -2.39 -0.02 2.14 16 49 H 0.04 2.09 7.00 -2.39 -0.02 2.08 16 Total: -1.00 -74.02 368.36 2.32 -71.70 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: 0.46 Total: 24.11 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: 5.53 Total: 5.66 kcal Atomic # 7 Polarization: -105.12 SS G_CDS: -4.18 Total: -109.30 kcal Atomic # 8 Polarization: -39.12 SS G_CDS: -1.52 Total: -40.64 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -74.02 2.32 -71.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027373956.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.597 kcal (2) G-P(sol) polarization free energy of solvation -74.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds