Wall clock time and date at job start Tue Mar 31 2020 10:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46895 * 2 1 4 4 H 1.09001 * 110.54752 * 51.68614 * 3 2 1 5 5 C 1.54815 * 110.48855 * 289.07053 * 3 2 1 6 6 C 1.54988 * 102.09580 * 220.44711 * 5 3 2 7 7 O 1.44381 * 103.49072 * 37.02163 * 6 5 3 8 8 C 1.43740 * 106.97447 * 319.93916 * 7 6 5 9 9 H 1.08996 * 110.00704 * 267.01474 * 8 7 6 10 10 C 1.50701 * 109.87656 * 145.93902 * 8 7 6 11 11 O 1.21281 * 120.00280 * 342.21566 * 10 8 7 12 12 N 1.34775 * 119.99925 * 162.22206 * 10 8 7 13 13 C 1.46925 * 120.63347 * 4.23784 * 12 10 8 14 14 C 1.53181 * 108.77741 * 233.58984 * 13 12 10 15 15 C 1.53039 * 109.31553 * 305.36341 * 14 13 12 16 16 C 1.53045 * 109.53863 * 61.36533 * 15 14 13 17 17 H 1.09003 * 109.49544 * 58.61880 * 16 15 14 18 18 N 1.46495 * 109.50075 * 178.68659 * 16 15 14 19 19 C 1.46500 * 119.99999 * 59.72397 * 18 16 15 20 20 C 1.36938 * 119.99837 * 240.00110 * 18 16 15 21 21 H 1.08001 * 120.00237 * 348.98263 * 20 18 16 22 22 C 1.38814 * 119.99893 * 168.98201 * 20 18 16 23 23 N 1.31612 * 120.00347 * 333.46322 * 22 20 18 24 24 Si 1.86801 * 119.99801 * 153.46285 * 22 20 18 25 25 H 1.48507 * 109.47025 * 85.00027 * 24 22 20 26 26 H 1.48501 * 109.47136 * 204.99596 * 24 22 20 27 27 H 1.48493 * 109.47416 * 325.00114 * 24 22 20 28 28 C 1.46928 * 120.62852 * 184.22151 * 12 10 8 29 29 H 1.08994 * 109.46934 * 60.00338 * 1 2 3 30 30 H 1.09002 * 109.47171 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47129 * 299.99957 * 1 2 3 32 32 H 1.09001 * 109.47129 * 240.00043 * 2 1 3 33 33 H 1.08994 * 109.46934 * 119.99662 * 2 1 3 34 34 H 1.09003 * 110.90440 * 338.64469 * 5 3 2 35 35 H 1.08996 * 110.90749 * 102.20923 * 5 3 2 36 36 H 1.09003 * 110.62160 * 155.52420 * 6 5 3 37 37 H 1.09003 * 110.61663 * 278.52347 * 6 5 3 38 38 H 1.09006 * 109.58510 * 113.80200 * 13 12 10 39 39 H 1.09002 * 109.70092 * 353.44696 * 13 12 10 40 40 H 1.09000 * 109.50075 * 185.41706 * 14 13 12 41 41 H 1.09003 * 109.52705 * 65.33034 * 14 13 12 42 42 H 1.09004 * 109.46176 * 301.34642 * 15 14 13 43 43 H 1.08997 * 109.45577 * 181.37868 * 15 14 13 44 44 H 1.09003 * 109.46668 * 271.93171 * 19 18 16 45 45 H 1.08993 * 109.47254 * 31.93620 * 19 18 16 46 46 H 1.09004 * 109.46796 * 151.94036 * 19 18 16 47 47 H 0.96996 * 120.00573 * 179.97438 * 23 22 20 48 48 H 1.09004 * 109.58975 * 6.61993 * 28 12 10 49 49 H 1.09003 * 109.58781 * 246.19768 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5709 2.0141 0.8008 5 6 1.7738 2.1113 -1.3706 6 6 3.0785 2.9165 -1.5979 7 8 4.1042 2.0550 -1.0591 8 6 3.5740 1.4723 0.1432 9 1 3.8541 2.0771 1.0056 10 6 4.1006 0.0700 0.3084 11 8 4.5807 -0.5132 -0.6404 12 7 4.0378 -0.5361 1.5105 13 6 3.3762 0.1203 2.6463 14 6 4.3493 0.1590 3.8287 15 6 4.8442 -1.2589 4.1235 16 6 5.5886 -1.8053 2.9030 17 1 6.4260 -1.1497 2.6640 18 7 6.0890 -3.1503 3.1972 19 6 5.1522 -4.2188 3.5536 20 6 7.4330 -3.4075 3.1445 21 1 8.1060 -2.6786 2.7178 22 6 7.9304 -4.6052 3.6397 23 7 7.2804 -5.2458 4.5880 24 14 9.5223 -5.3076 2.9600 25 1 10.6753 -4.6991 3.6711 26 1 9.5387 -6.7791 3.1589 27 1 9.6184 -5.0029 1.5098 28 6 4.6295 -1.8661 1.7100 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6390 1.3611 -2.1498 35 1 0.9106 2.7748 -1.3186 36 1 3.2423 3.0898 -2.6615 37 1 3.0462 3.8610 -1.0546 38 1 2.4849 -0.4420 2.9248 39 1 3.0956 1.1369 2.3706 40 1 3.8397 0.5561 4.7065 41 1 5.1981 0.7964 3.5812 42 1 3.9927 -1.9016 4.3472 43 1 5.5179 -1.2375 4.9800 44 1 4.9846 -4.2107 4.6306 45 1 4.2056 -4.0591 3.0374 46 1 5.5695 -5.1814 3.2581 47 1 7.6278 -6.0829 4.9338 48 1 5.1777 -2.1603 0.8150 49 1 3.8404 -2.5905 1.9122 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027449742.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:19 Heat of formation + Delta-G solvation = -52.093077 kcal Electronic energy + Delta-G solvation = -27905.041721 eV Core-core repulsion = 24254.040348 eV Total energy + Delta-G solvation = -3651.001373 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.94316 -38.89989 -37.16860 -35.35464 -34.72223 -32.34909 -31.36499 -30.59807 -29.88212 -28.42455 -26.03162 -25.30988 -23.93488 -23.53380 -22.75649 -21.68703 -21.03128 -19.41216 -18.50214 -17.29371 -16.78702 -16.65100 -16.33503 -15.40962 -15.02323 -14.75054 -14.59446 -14.46651 -14.10638 -13.82097 -13.74534 -13.57871 -13.19183 -12.86092 -12.69665 -12.65382 -12.39254 -12.17249 -11.97706 -11.81980 -11.48824 -11.33795 -11.11761 -10.98298 -10.95879 -10.91495 -10.74762 -10.56976 -10.40948 -10.31140 -10.16701 -10.14473 -9.84091 -9.73893 -9.25746 -8.53686 -8.26612 -6.87721 -5.78001 -3.05039 2.68297 3.01582 3.42419 3.50058 3.55593 3.83089 4.12563 4.35170 4.40772 4.53964 4.72848 4.85956 4.91443 4.95914 5.07869 5.11787 5.16714 5.18703 5.28180 5.35613 5.38680 5.45176 5.51143 5.54202 5.56556 5.59236 5.74616 5.77675 5.84307 5.87283 5.94615 5.98055 6.11742 6.13905 6.22254 6.36112 6.47976 6.57869 6.66948 6.79898 6.92661 6.98770 7.37297 7.61257 7.63181 7.84654 8.33438 8.39921 9.21692 9.88369 10.33313 11.30261 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.021437 B = 0.003608 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.813651 B = 7759.436960 C = 8181.078282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.135 4.135 3 C -0.108 4.108 4 H 0.091 0.909 5 C -0.148 4.148 6 C 0.044 3.956 7 O -0.348 6.348 8 C 0.061 3.939 9 H 0.090 0.910 10 C 0.519 3.481 11 O -0.523 6.523 12 N -0.605 5.605 13 C 0.106 3.894 14 C -0.133 4.133 15 C -0.133 4.133 16 C 0.170 3.830 17 H 0.065 0.935 18 N -0.593 5.593 19 C 0.157 3.843 20 C -0.256 4.256 21 H 0.073 0.927 22 C 0.002 3.998 23 N -0.899 5.899 24 Si 0.892 3.108 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.280 1.280 28 C 0.099 3.901 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.066 0.934 44 H 0.015 0.985 45 H -0.001 1.001 46 H 0.061 0.939 47 H 0.252 0.748 48 H 0.090 0.910 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.131 16.478 -5.869 23.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C -0.127 4.127 4 H 0.110 0.890 5 C -0.186 4.186 6 C -0.033 4.033 7 O -0.266 6.266 8 C 0.000 4.000 9 H 0.107 0.893 10 C 0.306 3.694 11 O -0.398 6.398 12 N -0.341 5.341 13 C -0.017 4.017 14 C -0.172 4.172 15 C -0.172 4.172 16 C 0.060 3.940 17 H 0.083 0.917 18 N -0.314 5.314 19 C 0.012 3.988 20 C -0.385 4.385 21 H 0.090 0.910 22 C -0.196 4.196 23 N -0.544 5.544 24 Si 0.722 3.278 25 H -0.215 1.215 26 H -0.216 1.216 27 H -0.206 1.206 28 C -0.024 4.024 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.113 0.887 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.085 0.915 44 H 0.033 0.967 45 H 0.017 0.983 46 H 0.080 0.920 47 H 0.062 0.938 48 H 0.108 0.892 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.592 15.919 -6.399 23.184 hybrid contribution 0.638 -0.349 0.053 0.729 sum -14.955 15.570 -6.346 22.502 Atomic orbital electron populations 1.21734 0.95198 1.01894 1.01579 1.21906 0.96490 0.94802 1.04023 1.22551 0.93096 0.98301 0.98793 0.89027 1.23241 0.98458 0.99878 0.96977 1.23613 0.86530 0.93186 0.99945 1.89012 1.37336 1.61272 1.38938 1.22803 0.93718 0.93303 0.90207 0.89256 1.20158 0.78967 0.87408 0.82865 1.90711 1.44646 1.65709 1.38768 1.48182 1.56870 1.19756 1.09286 1.21796 0.95682 0.97310 0.86899 1.21944 0.99071 0.99145 0.97047 1.22123 1.00520 0.93930 1.00672 1.20551 0.94315 0.88012 0.91112 0.91682 1.43997 1.03654 1.03778 1.79979 1.20852 0.88933 0.92380 0.96611 1.19226 0.83200 1.02226 1.33862 0.90963 1.24694 0.98115 0.99397 0.97356 1.70205 1.40981 1.18010 1.25224 0.86463 0.83482 0.78352 0.79553 1.21507 1.21581 1.20600 1.22401 0.97178 0.81286 1.01556 0.92800 0.92510 0.92704 0.91061 0.90220 0.90016 0.89951 0.88653 0.91984 0.91229 0.90550 0.91244 0.91696 0.92410 0.91484 0.96653 0.98267 0.92012 0.93757 0.89161 0.91836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.80 37.16 0.36 -0.80 16 2 C -0.13 -1.39 4.14 -26.73 -0.11 -1.50 16 3 C -0.11 -0.99 2.35 -89.09 -0.21 -1.20 16 4 H 0.09 0.62 8.11 -51.93 -0.42 0.20 16 5 C -0.15 -1.19 6.06 -24.72 -0.15 -1.34 16 6 C 0.04 0.40 7.72 38.21 0.29 0.70 16 7 O -0.35 -4.92 10.80 -54.12 -0.58 -5.50 16 8 C 0.06 0.76 2.92 -27.31 -0.08 0.68 16 9 H 0.09 0.93 6.84 -51.93 -0.36 0.58 16 10 C 0.52 8.42 5.00 -10.99 -0.05 8.37 16 11 O -0.52 -10.92 16.04 -13.33 -0.21 -11.13 16 12 N -0.61 -9.10 2.20 -172.77 -0.38 -9.48 16 13 C 0.11 1.19 4.90 -3.72 -0.02 1.17 16 14 C -0.13 -1.66 6.08 -26.62 -0.16 -1.82 16 15 C -0.13 -2.25 5.14 -26.69 -0.14 -2.38 16 16 C 0.17 3.44 2.75 -67.81 -0.19 3.25 16 17 H 0.06 1.41 7.80 -51.93 -0.40 1.00 16 18 N -0.59 -14.71 2.82 -173.34 -0.49 -15.20 16 19 C 0.16 3.79 8.19 59.85 0.49 4.28 16 20 C -0.26 -7.13 9.65 -15.06 -0.15 -7.27 16 21 H 0.07 2.00 7.82 -52.49 -0.41 1.59 16 22 C 0.00 0.07 4.81 -17.43 -0.08 -0.02 16 23 N -0.90 -26.17 10.92 55.49 0.61 -25.57 16 24 Si 0.89 22.15 29.63 -169.99 -5.04 17.12 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 27 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 28 C 0.10 1.83 5.77 -3.71 -0.02 1.81 16 29 H 0.05 0.38 7.65 -51.93 -0.40 -0.01 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.92 7.70 -51.93 -0.40 0.52 16 33 H 0.08 0.90 4.68 -51.93 -0.24 0.66 16 34 H 0.08 0.74 7.76 -51.93 -0.40 0.33 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.71 7.75 -51.93 -0.40 0.31 16 39 H 0.08 0.66 5.24 -51.93 -0.27 0.39 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.98 7.71 -51.93 -0.40 0.58 16 43 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 44 H 0.02 0.39 7.97 -51.93 -0.41 -0.02 16 45 H 0.00 -0.02 6.35 -51.93 -0.33 -0.35 16 46 H 0.06 1.65 6.40 -51.93 -0.33 1.32 16 47 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 48 H 0.09 1.94 7.03 -51.93 -0.37 1.57 16 49 H 0.06 1.15 6.49 -51.93 -0.34 0.82 16 LS Contribution 365.74 15.07 5.51 5.51 Total: -1.00 -33.03 365.74 -9.20 -42.23 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -8.40 Total: -1.90 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -0.21 Total: 3.92 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: -0.26 Total: -50.25 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -0.80 Total: -16.63 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.04 Total: 17.12 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.03 -9.20 -42.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027449742.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.864 kcal (2) G-P(sol) polarization free energy of solvation -33.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds