Wall clock time and date at job start Tue Mar 31 2020 10:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46895 * 2 1 4 4 H 1.09001 * 110.54752 * 51.68614 * 3 2 1 5 5 C 1.54815 * 110.48855 * 289.07053 * 3 2 1 6 6 C 1.54988 * 102.09580 * 220.44711 * 5 3 2 7 7 O 1.44381 * 103.49072 * 37.02163 * 6 5 3 8 8 C 1.43740 * 106.97447 * 319.93916 * 7 6 5 9 9 H 1.08996 * 110.00704 * 267.01474 * 8 7 6 10 10 C 1.50701 * 109.87656 * 145.93902 * 8 7 6 11 11 O 1.21281 * 120.00280 * 342.21566 * 10 8 7 12 12 N 1.34775 * 119.99925 * 162.22206 * 10 8 7 13 13 C 1.46925 * 120.63347 * 4.23784 * 12 10 8 14 14 C 1.53181 * 108.77741 * 233.58984 * 13 12 10 15 15 C 1.53039 * 109.31553 * 305.36341 * 14 13 12 16 16 C 1.53045 * 109.53863 * 61.36533 * 15 14 13 17 17 H 1.09003 * 109.49544 * 58.61880 * 16 15 14 18 18 N 1.46495 * 109.50075 * 178.68659 * 16 15 14 19 19 C 1.46500 * 119.99999 * 59.72397 * 18 16 15 20 20 C 1.36938 * 119.99837 * 240.00110 * 18 16 15 21 21 H 1.08001 * 120.00237 * 348.98263 * 20 18 16 22 22 C 1.38814 * 119.99893 * 168.98201 * 20 18 16 23 23 N 1.31612 * 120.00347 * 333.46322 * 22 20 18 24 24 Si 1.86801 * 119.99801 * 153.46285 * 22 20 18 25 25 H 1.48507 * 109.47025 * 85.00027 * 24 22 20 26 26 H 1.48501 * 109.47136 * 204.99596 * 24 22 20 27 27 H 1.48493 * 109.47416 * 325.00114 * 24 22 20 28 28 C 1.46928 * 120.62852 * 184.22151 * 12 10 8 29 29 H 1.08994 * 109.46934 * 60.00338 * 1 2 3 30 30 H 1.09002 * 109.47171 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47129 * 299.99957 * 1 2 3 32 32 H 1.09001 * 109.47129 * 240.00043 * 2 1 3 33 33 H 1.08994 * 109.46934 * 119.99662 * 2 1 3 34 34 H 1.09003 * 110.90440 * 338.64469 * 5 3 2 35 35 H 1.08996 * 110.90749 * 102.20923 * 5 3 2 36 36 H 1.09003 * 110.62160 * 155.52420 * 6 5 3 37 37 H 1.09003 * 110.61663 * 278.52347 * 6 5 3 38 38 H 1.09006 * 109.58510 * 113.80200 * 13 12 10 39 39 H 1.09002 * 109.70092 * 353.44696 * 13 12 10 40 40 H 1.09000 * 109.50075 * 185.41706 * 14 13 12 41 41 H 1.09003 * 109.52705 * 65.33034 * 14 13 12 42 42 H 1.09004 * 109.46176 * 301.34642 * 15 14 13 43 43 H 1.08997 * 109.45577 * 181.37868 * 15 14 13 44 44 H 1.09003 * 109.46668 * 271.93171 * 19 18 16 45 45 H 1.08993 * 109.47254 * 31.93620 * 19 18 16 46 46 H 1.09004 * 109.46796 * 151.94036 * 19 18 16 47 47 H 0.96996 * 120.00573 * 179.97438 * 23 22 20 48 48 H 1.09004 * 109.58975 * 6.61993 * 28 12 10 49 49 H 1.09003 * 109.58781 * 246.19768 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5709 2.0141 0.8008 5 6 1.7738 2.1113 -1.3706 6 6 3.0785 2.9165 -1.5979 7 8 4.1042 2.0550 -1.0591 8 6 3.5740 1.4723 0.1432 9 1 3.8541 2.0771 1.0056 10 6 4.1006 0.0700 0.3084 11 8 4.5807 -0.5132 -0.6404 12 7 4.0378 -0.5361 1.5105 13 6 3.3762 0.1203 2.6463 14 6 4.3493 0.1590 3.8287 15 6 4.8442 -1.2589 4.1235 16 6 5.5886 -1.8053 2.9030 17 1 6.4260 -1.1497 2.6640 18 7 6.0890 -3.1503 3.1972 19 6 5.1522 -4.2188 3.5536 20 6 7.4330 -3.4075 3.1445 21 1 8.1060 -2.6786 2.7178 22 6 7.9304 -4.6052 3.6397 23 7 7.2804 -5.2458 4.5880 24 14 9.5223 -5.3076 2.9600 25 1 10.6753 -4.6991 3.6711 26 1 9.5387 -6.7791 3.1589 27 1 9.6184 -5.0029 1.5098 28 6 4.6295 -1.8661 1.7100 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6390 1.3611 -2.1498 35 1 0.9106 2.7748 -1.3186 36 1 3.2423 3.0898 -2.6615 37 1 3.0462 3.8610 -1.0546 38 1 2.4849 -0.4420 2.9248 39 1 3.0956 1.1369 2.3706 40 1 3.8397 0.5561 4.7065 41 1 5.1981 0.7964 3.5812 42 1 3.9927 -1.9016 4.3472 43 1 5.5179 -1.2375 4.9800 44 1 4.9846 -4.2107 4.6306 45 1 4.2056 -4.0591 3.0374 46 1 5.5695 -5.1814 3.2581 47 1 7.6278 -6.0829 4.9338 48 1 5.1777 -2.1603 0.8150 49 1 3.8404 -2.5905 1.9122 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027449742.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:17 Heat of formation + Delta-G solvation = -72.428108 kcal Electronic energy + Delta-G solvation = -27905.923514 eV Core-core repulsion = 24254.040348 eV Total energy + Delta-G solvation = -3651.883166 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.00410 -40.02684 -38.61202 -36.90355 -35.69825 -33.96755 -32.88180 -31.44599 -31.01382 -29.75350 -28.09228 -26.49671 -25.40910 -24.52637 -23.62390 -23.05369 -21.97854 -20.82472 -19.73951 -18.79478 -18.30741 -17.61892 -17.45595 -16.96111 -16.28595 -15.95089 -15.72377 -15.58556 -15.46044 -15.29116 -15.06192 -14.52749 -14.46589 -14.39047 -13.93932 -13.76170 -13.65881 -13.49317 -13.07285 -12.99531 -12.83208 -12.56119 -12.48098 -12.30660 -12.23265 -12.13632 -12.06985 -11.95598 -11.81878 -11.67830 -11.62123 -11.46020 -11.41409 -11.07181 -10.57609 -10.39224 -9.72491 -8.89454 -7.93700 -5.21723 1.40711 1.45063 1.49829 1.54991 1.83773 2.48962 2.99109 3.19707 3.31848 3.46540 3.59422 3.68439 3.93078 3.98085 4.06912 4.08351 4.18349 4.23339 4.28899 4.34773 4.40113 4.46976 4.51275 4.60917 4.69815 4.74279 4.75903 4.82902 4.86053 4.87142 4.90350 5.00501 5.01545 5.13858 5.14812 5.20494 5.25997 5.27108 5.42486 5.44153 5.46626 5.48540 5.59444 5.67062 5.84607 6.24449 6.42585 7.08899 7.15473 7.84085 8.23731 9.12880 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.021437 B = 0.003608 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.813651 B = 7759.436960 C = 8181.078282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.133 4.133 3 C -0.102 4.102 4 H 0.135 0.865 5 C -0.143 4.143 6 C 0.036 3.964 7 O -0.392 6.392 8 C 0.063 3.937 9 H 0.119 0.881 10 C 0.512 3.488 11 O -0.585 6.585 12 N -0.601 5.601 13 C 0.102 3.898 14 C -0.124 4.124 15 C -0.123 4.123 16 C 0.168 3.832 17 H 0.042 0.958 18 N -0.610 5.610 19 C 0.174 3.826 20 C -0.270 4.270 21 H 0.064 0.936 22 C -0.044 4.044 23 N -0.925 5.925 24 Si 0.952 3.048 25 H -0.282 1.282 26 H -0.288 1.288 27 H -0.282 1.282 28 C 0.116 3.884 29 H 0.062 0.938 30 H 0.047 0.953 31 H 0.077 0.923 32 H 0.030 0.970 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.118 0.882 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.117 0.883 40 H 0.108 0.892 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.043 0.957 44 H -0.001 1.001 45 H 0.030 0.970 46 H 0.030 0.970 47 H 0.251 0.749 48 H 0.049 0.951 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.764 19.567 -5.143 27.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.171 4.171 3 C -0.120 4.120 4 H 0.153 0.847 5 C -0.180 4.180 6 C -0.039 4.039 7 O -0.311 6.311 8 C 0.002 3.998 9 H 0.136 0.864 10 C 0.301 3.699 11 O -0.464 6.464 12 N -0.335 5.335 13 C -0.019 4.019 14 C -0.162 4.162 15 C -0.162 4.162 16 C 0.060 3.940 17 H 0.060 0.940 18 N -0.333 5.333 19 C 0.029 3.971 20 C -0.399 4.399 21 H 0.082 0.918 22 C -0.240 4.240 23 N -0.571 5.571 24 Si 0.781 3.219 25 H -0.208 1.208 26 H -0.214 1.214 27 H -0.208 1.208 28 C -0.009 4.009 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.049 0.951 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.137 0.863 36 H 0.116 0.884 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.135 0.865 40 H 0.126 0.874 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.062 0.938 44 H 0.017 0.983 45 H 0.048 0.952 46 H 0.049 0.951 47 H 0.060 0.940 48 H 0.068 0.932 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.261 19.063 -5.656 26.997 hybrid contribution 1.457 -1.271 -0.230 1.947 sum -16.804 17.793 -5.886 25.171 Atomic orbital electron populations 1.21700 0.93045 1.01920 1.03142 1.21845 0.98291 0.95390 1.01556 1.22675 0.90588 0.97885 1.00885 0.84668 1.23244 0.99239 0.99755 0.95755 1.23911 0.85822 0.93676 1.00510 1.88976 1.39786 1.62374 1.39922 1.22987 0.95695 0.90287 0.90829 0.86376 1.21109 0.77760 0.88937 0.82071 1.90677 1.47451 1.67440 1.40875 1.48220 1.56355 1.18426 1.10532 1.22170 0.95482 0.99515 0.84723 1.21914 0.99598 0.95552 0.99170 1.21935 0.99592 0.97170 0.97534 1.20696 0.94336 0.85676 0.93326 0.93982 1.44188 1.02945 1.05853 1.80283 1.20581 0.89779 0.90953 0.95761 1.19453 0.84709 1.02438 1.33330 0.91817 1.25345 1.01256 0.99686 0.97711 1.70305 1.42526 1.18161 1.26150 0.85523 0.80368 0.77518 0.78539 1.20847 1.21387 1.20825 1.21863 0.96568 0.83768 0.98713 0.91897 0.93395 0.90364 0.95094 0.91273 0.91971 0.86330 0.88430 0.89099 0.89084 0.86518 0.87366 0.92022 0.92039 0.93847 0.98284 0.95182 0.95073 0.94022 0.93189 0.91413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.80 71.98 0.71 -1.08 16 2 C -0.13 -2.48 4.14 30.59 0.13 -2.35 16 3 C -0.10 -1.45 2.35 -9.80 -0.02 -1.47 16 4 H 0.14 0.85 8.11 -2.39 -0.02 0.83 16 5 C -0.14 -1.82 6.06 31.89 0.19 -1.62 16 6 C 0.04 0.57 7.72 72.66 0.56 1.13 16 7 O -0.39 -10.64 10.80 -130.92 -1.41 -12.05 16 8 C 0.06 1.40 2.92 30.22 0.09 1.49 16 9 H 0.12 1.92 6.84 -2.39 -0.02 1.90 16 10 C 0.51 16.57 5.00 87.66 0.44 17.01 16 11 O -0.58 -25.84 16.04 15.03 0.24 -25.60 16 12 N -0.60 -17.54 2.20 -818.90 -1.80 -19.35 16 13 C 0.10 1.89 4.90 86.36 0.42 2.31 16 14 C -0.12 -2.65 6.08 30.67 0.19 -2.46 16 15 C -0.12 -4.04 5.14 30.62 0.16 -3.89 16 16 C 0.17 6.97 2.75 45.07 0.12 7.09 16 17 H 0.04 1.91 7.80 -2.39 -0.02 1.89 16 18 N -0.61 -31.40 2.82 -702.34 -1.98 -33.38 16 19 C 0.17 8.65 8.19 127.77 1.05 9.70 16 20 C -0.27 -15.57 9.65 84.03 0.81 -14.75 16 21 H 0.06 3.69 7.82 -2.91 -0.02 3.66 16 22 C -0.04 -2.56 4.81 84.86 0.41 -2.15 16 23 N -0.93 -55.32 10.92 21.65 0.24 -55.09 16 24 Si 0.95 46.86 29.63 68.60 2.03 48.89 16 25 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 26 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 27 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 28 C 0.12 4.39 5.77 86.36 0.50 4.89 16 29 H 0.06 0.69 7.65 -2.39 -0.02 0.67 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.03 0.81 7.70 -2.39 -0.02 0.79 16 33 H 0.07 1.41 4.68 -2.39 -0.01 1.40 16 34 H 0.06 1.04 7.76 -2.39 -0.02 1.02 16 35 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.09 1.40 7.75 -2.38 -0.02 1.39 16 39 H 0.12 1.30 5.24 -2.39 -0.01 1.29 16 40 H 0.11 1.61 8.14 -2.39 -0.02 1.60 16 41 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.06 1.98 7.71 -2.38 -0.02 1.96 16 43 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.00 -0.06 7.97 -2.39 -0.02 -0.08 16 45 H 0.03 1.27 6.35 -2.39 -0.02 1.26 16 46 H 0.03 1.71 6.40 -2.38 -0.02 1.69 16 47 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 48 H 0.05 2.29 7.03 -2.39 -0.02 2.28 16 49 H 0.07 2.48 6.49 -2.39 -0.02 2.47 16 Total: -1.00 -78.99 365.74 3.97 -75.01 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: 0.92 Total: 7.73 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: 5.74 Total: 13.82 kcal Atomic # 7 Polarization: -104.26 SS G_CDS: -3.55 Total: -107.81 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: -1.17 Total: -37.65 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -78.99 3.97 -75.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027449742.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.584 kcal (2) G-P(sol) polarization free energy of solvation -78.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds