Wall clock time and date at job start Tue Mar 31 2020 10:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53005 * 109.47195 * 2 1 4 4 H 1.08996 * 109.86896 * 54.55040 * 3 2 1 5 5 C 1.54097 * 109.87857 * 175.71750 * 3 2 1 6 6 C 1.54810 * 104.18953 * 121.45267 * 5 3 2 7 7 C 1.54991 * 102.09292 * 20.87720 * 6 5 3 8 8 H 1.09001 * 110.75519 * 81.54344 * 7 6 5 9 9 C 1.50703 * 110.61945 * 204.47558 * 7 6 5 10 10 O 1.21279 * 120.00024 * 110.52667 * 9 7 6 11 11 N 1.34778 * 119.99935 * 290.52315 * 9 7 6 12 12 C 1.46499 * 119.99771 * 179.97438 * 11 9 7 13 13 H 1.08992 * 109.47397 * 325.00275 * 12 11 9 14 14 C 1.53002 * 109.46799 * 85.00174 * 12 11 9 15 15 C 1.52997 * 109.46817 * 179.97438 * 14 12 11 16 16 C 1.53005 * 109.47452 * 300.00239 * 15 14 12 17 17 H 1.09002 * 109.46935 * 300.00125 * 16 15 14 18 18 N 1.46496 * 109.47414 * 180.02562 * 16 15 14 19 19 C 1.36933 * 120.00258 * 154.99497 * 18 16 15 20 20 H 1.07997 * 120.00195 * 0.02562 * 19 18 16 21 21 C 1.38814 * 120.00104 * 179.97438 * 19 18 16 22 22 N 1.31617 * 120.00032 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99990 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.46973 * 89.99736 * 23 21 19 25 25 H 1.48492 * 109.47032 * 209.99634 * 23 21 19 26 26 H 1.48491 * 109.47161 * 330.00041 * 23 21 19 27 27 C 1.52999 * 109.47159 * 59.99536 * 16 15 14 28 28 C 1.52997 * 109.47317 * 300.00546 * 27 16 15 29 29 O 1.43744 * 109.87517 * 293.54403 * 3 2 1 30 30 H 1.08996 * 109.47576 * 300.00422 * 1 2 3 31 31 H 1.09001 * 109.47341 * 60.00111 * 1 2 3 32 32 H 1.08999 * 109.47088 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47761 * 239.99952 * 2 1 3 34 34 H 1.09001 * 109.47341 * 119.99889 * 2 1 3 35 35 H 1.09000 * 110.48430 * 240.12779 * 5 3 2 36 36 H 1.08997 * 110.49445 * 2.63921 * 5 3 2 37 37 H 1.08996 * 110.90988 * 262.67504 * 6 5 3 38 38 H 1.09003 * 110.90780 * 139.07391 * 6 5 3 39 39 H 0.97006 * 119.99662 * 0.02562 * 11 9 7 40 40 H 1.08993 * 109.47662 * 299.99952 * 14 12 11 41 41 H 1.09002 * 109.47075 * 60.00457 * 14 12 11 42 42 H 1.09002 * 109.47153 * 60.00231 * 15 14 12 43 43 H 1.09001 * 109.47289 * 180.02562 * 15 14 12 44 44 H 0.97007 * 119.99693 * 334.99885 * 18 16 15 45 45 H 0.97001 * 120.00297 * 180.02562 * 22 21 19 46 46 H 1.08996 * 109.46929 * 179.97438 * 27 16 15 47 47 H 1.09002 * 109.46716 * 60.00455 * 27 16 15 48 48 H 1.09002 * 109.47153 * 299.99641 * 28 27 16 49 49 H 1.09001 * 109.46832 * 179.97438 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6029 1.9900 0.8351 5 6 3.5771 1.4548 0.1082 6 6 4.0409 2.2089 -1.1618 7 6 2.7658 2.9973 -1.5551 8 1 2.6785 3.9098 -0.9653 9 6 2.7733 3.3181 -3.0276 10 8 1.9862 2.7717 -3.7712 11 7 3.6545 4.2121 -3.5181 12 6 3.6621 4.5235 -4.9496 13 1 3.4195 3.6257 -5.5180 14 6 2.6230 5.6081 -5.2411 15 6 2.6314 5.9337 -6.7360 16 6 4.0191 6.4348 -7.1411 17 1 4.2616 7.3325 -6.5723 18 7 4.0270 6.7472 -8.5723 19 6 4.9224 7.6558 -9.0700 20 1 5.6231 8.1420 -8.4074 21 6 4.9301 7.9514 -10.4263 22 7 5.7911 8.8244 -10.9046 23 14 3.7186 7.1101 -11.5725 24 1 2.4749 7.9171 -11.6569 25 1 4.3207 6.9856 -12.9241 26 1 3.3970 5.7588 -11.0474 27 6 5.0582 5.3503 -6.8495 28 6 5.0498 5.0247 -5.3546 29 8 1.6937 2.0833 -1.2393 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.8921 1.9883 1.0050 36 1 3.9673 0.4371 0.1140 37 1 4.3236 1.5091 -1.9482 38 1 4.8627 2.8874 -0.9330 39 1 4.2842 4.6489 -2.9233 40 1 1.6345 5.2513 -4.9521 41 1 2.8657 6.5059 -4.6727 42 1 2.3890 5.0360 -7.3047 43 1 1.8915 6.7067 -6.9436 44 1 3.3978 6.3103 -9.1675 45 1 5.7963 9.0313 -11.8523 46 1 6.0467 5.7071 -7.1385 47 1 4.8158 4.4526 -7.4183 48 1 5.2923 5.9224 -4.7858 49 1 5.7898 4.2517 -5.1470 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034656708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:37 Heat of formation + Delta-G solvation = -93.828778 kcal Electronic energy + Delta-G solvation = -26107.629612 eV Core-core repulsion = 22454.818443 eV Total energy + Delta-G solvation = -3652.811169 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.67324 -39.32154 -37.84250 -34.98848 -33.97608 -33.19892 -32.41610 -31.01757 -30.48572 -29.22928 -27.47123 -24.75634 -23.25351 -22.44900 -22.37527 -21.30749 -21.04180 -20.49583 -19.60503 -17.66037 -17.37287 -17.04726 -16.54688 -15.82022 -15.30576 -14.96612 -14.76958 -14.27524 -14.04200 -13.91986 -13.79059 -13.72234 -13.40083 -13.36334 -12.90613 -12.65191 -12.39994 -12.22049 -12.16740 -11.93042 -11.87745 -11.82070 -11.44094 -11.19012 -11.00995 -10.96494 -10.91535 -10.82877 -10.67425 -10.35103 -10.20783 -10.13797 -9.79293 -9.64799 -9.54707 -9.05560 -8.87652 -7.24720 -5.75677 -3.10711 2.44422 2.70827 3.40025 3.43834 3.47595 3.63751 4.03146 4.21700 4.41770 4.45942 4.61210 4.66662 4.74750 4.83071 4.91432 4.92464 5.00737 5.10773 5.12948 5.25439 5.27410 5.41658 5.47933 5.48294 5.50501 5.56873 5.59408 5.60539 5.64023 5.76234 5.79739 5.83026 5.94777 6.01631 6.16374 6.19800 6.23243 6.30283 6.44532 6.48174 6.55271 6.61873 6.88256 7.02670 7.38356 8.00989 8.11272 8.43815 9.22769 9.95784 10.16035 11.42669 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.035411 B = 0.002323 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.522292 B =12049.796614 C =12492.060012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C 0.072 3.928 4 H 0.071 0.929 5 C -0.151 4.151 6 C -0.143 4.143 7 C 0.058 3.942 8 H 0.094 0.906 9 C 0.517 3.483 10 O -0.518 6.518 11 N -0.722 5.722 12 C 0.146 3.854 13 H 0.087 0.913 14 C -0.121 4.121 15 C -0.125 4.125 16 C 0.182 3.818 17 H 0.055 0.945 18 N -0.750 5.750 19 C -0.241 4.241 20 H 0.090 0.910 21 C 0.003 3.997 22 N -0.935 5.935 23 Si 0.884 3.116 24 H -0.284 1.284 25 H -0.292 1.292 26 H -0.277 1.277 27 C -0.132 4.132 28 C -0.121 4.121 29 O -0.341 6.341 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.398 0.602 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.066 0.934 44 H 0.361 0.639 45 H 0.259 0.741 46 H 0.071 0.929 47 H 0.056 0.944 48 H 0.066 0.934 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.442 -15.258 26.876 31.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C 0.014 3.986 4 H 0.089 0.911 5 C -0.189 4.189 6 C -0.181 4.181 7 C -0.003 4.003 8 H 0.112 0.888 9 C 0.301 3.699 10 O -0.392 6.392 11 N -0.375 5.375 12 C 0.042 3.958 13 H 0.105 0.895 14 C -0.160 4.160 15 C -0.164 4.164 16 C 0.072 3.928 17 H 0.073 0.927 18 N -0.392 5.392 19 C -0.371 4.371 20 H 0.108 0.892 21 C -0.193 4.193 22 N -0.583 5.583 23 Si 0.714 3.286 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.203 1.203 27 C -0.173 4.173 28 C -0.160 4.160 29 O -0.259 6.259 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.232 0.768 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.085 0.915 44 H 0.193 0.807 45 H 0.069 0.931 46 H 0.090 0.910 47 H 0.075 0.925 48 H 0.084 0.916 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.048 -15.525 26.159 30.836 hybrid contribution -0.251 -0.260 -0.488 0.608 sum -5.300 -15.785 25.671 30.598 Atomic orbital electron populations 1.21727 0.95145 1.01598 1.02433 1.21714 0.97081 0.94541 1.02573 1.22890 0.93953 0.94429 0.87307 0.91115 1.23016 0.95453 1.02131 0.98260 1.23084 0.96922 0.99676 0.98392 1.22992 0.88334 0.95077 0.93898 0.88819 1.20142 0.81046 0.79375 0.89299 1.90743 1.38315 1.50682 1.59494 1.46066 1.37345 1.43742 1.10319 1.21126 0.96314 0.98820 0.79493 0.89478 1.21832 0.98861 0.98149 0.97190 1.21805 0.98932 1.01221 0.94418 1.20215 0.91513 0.95117 0.85920 0.92683 1.42810 1.42372 1.50747 1.03227 1.19073 1.10737 1.14594 0.92712 0.89236 1.24678 0.98822 0.99118 0.96678 1.69700 1.38414 1.36840 1.13342 0.86550 0.81463 0.79549 0.80998 1.21117 1.21825 1.20268 1.22187 1.02254 1.00462 0.92398 1.21804 0.94628 1.00750 0.98791 1.89045 1.40886 1.56216 1.39752 0.92936 0.91708 0.92787 0.91055 0.90844 0.90239 0.89902 0.89840 0.89281 0.76824 0.91910 0.91780 0.92177 0.91485 0.80660 0.93117 0.91037 0.92515 0.91580 0.92066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.82 37.15 0.36 -0.78 16 2 C -0.12 -0.86 5.42 -26.73 -0.14 -1.00 16 3 C 0.07 0.54 3.42 -26.16 -0.09 0.45 16 4 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 5 C -0.15 -0.82 6.64 -25.20 -0.17 -0.99 16 6 C -0.14 -0.92 6.57 -24.73 -0.16 -1.08 16 7 C 0.06 0.53 3.76 -26.83 -0.10 0.43 16 8 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 9 C 0.52 6.32 7.16 -10.98 -0.08 6.24 16 10 O -0.52 -8.90 16.23 -13.48 -0.22 -9.12 16 11 N -0.72 -7.29 5.08 -53.81 -0.27 -7.57 16 12 C 0.15 1.84 2.45 -67.93 -0.17 1.67 16 13 H 0.09 1.29 7.58 -51.93 -0.39 0.90 16 14 C -0.12 -1.64 5.49 -26.73 -0.15 -1.79 16 15 C -0.12 -2.00 5.39 -26.73 -0.14 -2.14 16 16 C 0.18 3.39 2.77 -67.93 -0.19 3.20 16 17 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 18 N -0.75 -17.63 4.93 -53.43 -0.26 -17.89 16 19 C -0.24 -6.74 10.41 -15.06 -0.16 -6.90 16 20 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 21 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 22 N -0.94 -29.35 13.97 55.49 0.78 -28.57 16 23 Si 0.88 22.33 27.74 -169.99 -4.71 17.62 16 24 H -0.28 -7.16 7.11 56.52 0.40 -6.75 16 25 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 26 H -0.28 -6.62 6.52 56.52 0.37 -6.25 16 27 C -0.13 -2.18 5.50 -26.73 -0.15 -2.33 16 28 C -0.12 -1.49 5.39 -26.73 -0.14 -1.63 16 29 O -0.34 -3.87 10.09 -54.27 -0.55 -4.42 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.63 7.89 -51.93 -0.41 0.22 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 0.40 7.70 -51.93 -0.40 0.00 16 37 H 0.08 0.64 8.05 -51.93 -0.42 0.22 16 38 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.40 2.72 8.60 -40.82 -0.35 2.37 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.36 8.46 5.66 -40.82 -0.23 8.22 16 45 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 46 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 47 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 384.67 15.07 5.80 5.80 Total: -1.00 -34.56 384.67 -9.99 -44.55 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -8.98 Total: 6.27 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -1.57 Total: -6.67 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: 0.24 Total: -54.03 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -0.77 Total: -13.54 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.71 Total: 17.62 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.56 -9.99 -44.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034656708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.278 kcal (2) G-P(sol) polarization free energy of solvation -34.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds