Wall clock time and date at job start Tue Mar 31 2020 10:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53005 * 109.47195 * 2 1 4 4 H 1.08996 * 109.86896 * 54.55040 * 3 2 1 5 5 C 1.54097 * 109.87857 * 175.71750 * 3 2 1 6 6 C 1.54810 * 104.18953 * 121.45267 * 5 3 2 7 7 C 1.54991 * 102.09292 * 20.87720 * 6 5 3 8 8 H 1.09001 * 110.75519 * 81.54344 * 7 6 5 9 9 C 1.50703 * 110.61945 * 204.47558 * 7 6 5 10 10 O 1.21279 * 120.00024 * 110.52667 * 9 7 6 11 11 N 1.34778 * 119.99935 * 290.52315 * 9 7 6 12 12 C 1.46499 * 119.99771 * 179.97438 * 11 9 7 13 13 H 1.08992 * 109.47397 * 325.00275 * 12 11 9 14 14 C 1.53002 * 109.46799 * 85.00174 * 12 11 9 15 15 C 1.52997 * 109.46817 * 179.97438 * 14 12 11 16 16 C 1.53005 * 109.47452 * 300.00239 * 15 14 12 17 17 H 1.09002 * 109.46935 * 300.00125 * 16 15 14 18 18 N 1.46496 * 109.47414 * 180.02562 * 16 15 14 19 19 C 1.36933 * 120.00258 * 154.99497 * 18 16 15 20 20 H 1.07997 * 120.00195 * 0.02562 * 19 18 16 21 21 C 1.38814 * 120.00104 * 179.97438 * 19 18 16 22 22 N 1.31617 * 120.00032 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99990 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.46973 * 89.99736 * 23 21 19 25 25 H 1.48492 * 109.47032 * 209.99634 * 23 21 19 26 26 H 1.48491 * 109.47161 * 330.00041 * 23 21 19 27 27 C 1.52999 * 109.47159 * 59.99536 * 16 15 14 28 28 C 1.52997 * 109.47317 * 300.00546 * 27 16 15 29 29 O 1.43744 * 109.87517 * 293.54403 * 3 2 1 30 30 H 1.08996 * 109.47576 * 300.00422 * 1 2 3 31 31 H 1.09001 * 109.47341 * 60.00111 * 1 2 3 32 32 H 1.08999 * 109.47088 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47761 * 239.99952 * 2 1 3 34 34 H 1.09001 * 109.47341 * 119.99889 * 2 1 3 35 35 H 1.09000 * 110.48430 * 240.12779 * 5 3 2 36 36 H 1.08997 * 110.49445 * 2.63921 * 5 3 2 37 37 H 1.08996 * 110.90988 * 262.67504 * 6 5 3 38 38 H 1.09003 * 110.90780 * 139.07391 * 6 5 3 39 39 H 0.97006 * 119.99662 * 0.02562 * 11 9 7 40 40 H 1.08993 * 109.47662 * 299.99952 * 14 12 11 41 41 H 1.09002 * 109.47075 * 60.00457 * 14 12 11 42 42 H 1.09002 * 109.47153 * 60.00231 * 15 14 12 43 43 H 1.09001 * 109.47289 * 180.02562 * 15 14 12 44 44 H 0.97007 * 119.99693 * 334.99885 * 18 16 15 45 45 H 0.97001 * 120.00297 * 180.02562 * 22 21 19 46 46 H 1.08996 * 109.46929 * 179.97438 * 27 16 15 47 47 H 1.09002 * 109.46716 * 60.00455 * 27 16 15 48 48 H 1.09002 * 109.47153 * 299.99641 * 28 27 16 49 49 H 1.09001 * 109.46832 * 179.97438 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6029 1.9900 0.8351 5 6 3.5771 1.4548 0.1082 6 6 4.0409 2.2089 -1.1618 7 6 2.7658 2.9973 -1.5551 8 1 2.6785 3.9098 -0.9653 9 6 2.7733 3.3181 -3.0276 10 8 1.9862 2.7717 -3.7712 11 7 3.6545 4.2121 -3.5181 12 6 3.6621 4.5235 -4.9496 13 1 3.4195 3.6257 -5.5180 14 6 2.6230 5.6081 -5.2411 15 6 2.6314 5.9337 -6.7360 16 6 4.0191 6.4348 -7.1411 17 1 4.2616 7.3325 -6.5723 18 7 4.0270 6.7472 -8.5723 19 6 4.9224 7.6558 -9.0700 20 1 5.6231 8.1420 -8.4074 21 6 4.9301 7.9514 -10.4263 22 7 5.7911 8.8244 -10.9046 23 14 3.7186 7.1101 -11.5725 24 1 2.4749 7.9171 -11.6569 25 1 4.3207 6.9856 -12.9241 26 1 3.3970 5.7588 -11.0474 27 6 5.0582 5.3503 -6.8495 28 6 5.0498 5.0247 -5.3546 29 8 1.6937 2.0833 -1.2393 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.8921 1.9883 1.0050 36 1 3.9673 0.4371 0.1140 37 1 4.3236 1.5091 -1.9482 38 1 4.8627 2.8874 -0.9330 39 1 4.2842 4.6489 -2.9233 40 1 1.6345 5.2513 -4.9521 41 1 2.8657 6.5059 -4.6727 42 1 2.3890 5.0360 -7.3047 43 1 1.8915 6.7067 -6.9436 44 1 3.3978 6.3103 -9.1675 45 1 5.7963 9.0313 -11.8523 46 1 6.0467 5.7071 -7.1385 47 1 4.8158 4.4526 -7.4183 48 1 5.2923 5.9224 -4.7858 49 1 5.7898 4.2517 -5.1470 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034656708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:36 Heat of formation + Delta-G solvation = -117.010244 kcal Electronic energy + Delta-G solvation = -26108.634836 eV Core-core repulsion = 22454.818443 eV Total energy + Delta-G solvation = -3653.816393 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.49058 -40.22934 -39.04465 -36.46779 -34.77482 -34.50262 -33.25510 -32.68704 -31.71362 -30.17340 -28.68447 -25.72184 -24.81458 -23.65244 -23.00803 -22.38137 -21.83342 -21.50124 -20.94194 -19.55829 -18.33487 -17.74382 -17.30826 -16.84027 -16.59763 -16.34269 -15.78261 -15.70290 -15.08492 -14.96891 -14.62354 -14.53271 -14.46324 -14.39830 -14.34845 -13.96723 -13.74440 -13.44498 -13.11741 -12.94142 -12.90364 -12.68937 -12.47819 -12.41650 -12.14403 -12.05236 -11.98843 -11.94409 -11.78964 -11.72125 -11.68214 -11.47562 -11.15334 -10.91051 -10.88892 -10.54098 -10.06471 -9.28917 -8.01139 -5.33327 1.38298 1.39843 1.47226 1.54268 1.88298 2.48854 3.00197 3.29968 3.46000 3.57497 3.66538 3.74330 3.86408 3.90103 3.95339 4.13659 4.19055 4.20471 4.31961 4.32895 4.36443 4.39835 4.51612 4.57845 4.61624 4.63561 4.78113 4.83795 4.89469 4.91478 4.93357 5.03012 5.07003 5.10288 5.11494 5.17127 5.20833 5.26547 5.27400 5.41113 5.45371 5.52077 5.60760 5.79987 5.91947 6.23712 6.57520 7.09474 7.25028 7.87283 8.05180 9.20245 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.035411 B = 0.002323 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.522292 B =12049.796614 C =12492.060012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C 0.063 3.937 4 H 0.083 0.917 5 C -0.144 4.144 6 C -0.138 4.138 7 C 0.057 3.943 8 H 0.123 0.877 9 C 0.514 3.486 10 O -0.576 6.576 11 N -0.704 5.704 12 C 0.153 3.847 13 H 0.064 0.936 14 C -0.112 4.112 15 C -0.117 4.117 16 C 0.175 3.825 17 H 0.050 0.950 18 N -0.756 5.756 19 C -0.222 4.222 20 H 0.062 0.938 21 C -0.066 4.066 22 N -0.984 5.984 23 Si 0.951 3.049 24 H -0.280 1.280 25 H -0.297 1.297 26 H -0.256 1.256 27 C -0.126 4.126 28 C -0.107 4.107 29 O -0.381 6.381 30 H 0.063 0.937 31 H 0.034 0.966 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.065 0.935 38 H 0.121 0.879 39 H 0.419 0.581 40 H 0.055 0.945 41 H 0.081 0.919 42 H 0.055 0.945 43 H 0.063 0.937 44 H 0.362 0.638 45 H 0.256 0.744 46 H 0.050 0.950 47 H 0.049 0.951 48 H 0.085 0.915 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.324 -16.287 29.808 34.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C 0.006 3.994 4 H 0.101 0.899 5 C -0.181 4.181 6 C -0.176 4.176 7 C -0.003 4.003 8 H 0.141 0.859 9 C 0.300 3.700 10 O -0.455 6.455 11 N -0.357 5.357 12 C 0.048 3.952 13 H 0.082 0.918 14 C -0.151 4.151 15 C -0.156 4.156 16 C 0.068 3.932 17 H 0.068 0.932 18 N -0.398 5.398 19 C -0.353 4.353 20 H 0.080 0.920 21 C -0.258 4.258 22 N -0.635 5.635 23 Si 0.779 3.221 24 H -0.207 1.207 25 H -0.224 1.224 26 H -0.181 1.181 27 C -0.167 4.167 28 C -0.145 4.145 29 O -0.300 6.300 30 H 0.082 0.918 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.117 0.883 35 H 0.124 0.876 36 H 0.107 0.893 37 H 0.084 0.916 38 H 0.139 0.861 39 H 0.256 0.744 40 H 0.073 0.927 41 H 0.099 0.901 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.195 0.805 45 H 0.065 0.935 46 H 0.069 0.931 47 H 0.068 0.932 48 H 0.104 0.896 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.917 -16.571 29.176 33.912 hybrid contribution -0.285 0.069 -1.302 1.335 sum -5.201 -16.502 27.873 32.807 Atomic orbital electron populations 1.21717 0.95896 1.01774 1.01471 1.21762 0.96468 0.94825 1.02925 1.23126 0.95754 0.94228 0.86267 0.89935 1.23030 0.93559 1.02828 0.98722 1.23119 0.96498 0.99685 0.98260 1.23168 0.89278 0.96363 0.91508 0.85949 1.20841 0.80047 0.78510 0.90593 1.90719 1.40731 1.52869 1.61181 1.45812 1.37235 1.43149 1.09478 1.20859 0.96050 0.97465 0.80844 0.91816 1.21741 0.98907 0.99115 0.95373 1.21690 0.96925 1.00737 0.96219 1.20473 0.93828 0.95739 0.83196 0.93177 1.42891 1.41506 1.50032 1.05370 1.19046 1.09975 1.14000 0.92293 0.92040 1.25452 1.01222 1.00536 0.98555 1.69869 1.40894 1.39185 1.13506 0.85466 0.78939 0.79397 0.78327 1.20661 1.22404 1.18102 1.22001 1.00000 0.99056 0.95613 1.21661 0.94911 1.02309 0.95629 1.89023 1.42324 1.57109 1.41542 0.91842 0.94625 0.92088 0.92761 0.88288 0.87647 0.89318 0.91619 0.86076 0.74376 0.92668 0.90082 0.92634 0.91811 0.80502 0.93489 0.93110 0.93212 0.89596 0.89979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.82 71.98 0.71 -1.53 16 2 C -0.12 -1.58 5.42 30.59 0.17 -1.41 16 3 C 0.06 0.83 3.42 30.97 0.11 0.93 16 4 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 5 C -0.14 -1.07 6.64 31.58 0.21 -0.86 16 6 C -0.14 -1.33 6.57 31.89 0.21 -1.12 16 7 C 0.06 0.91 3.76 30.53 0.11 1.03 16 8 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 9 C 0.51 11.89 7.16 87.66 0.63 12.52 16 10 O -0.58 -20.07 16.23 15.18 0.25 -19.82 16 11 N -0.70 -12.41 5.08 -442.54 -2.25 -14.66 16 12 C 0.15 3.56 2.45 44.99 0.11 3.67 16 13 H 0.06 1.85 7.58 -2.39 -0.02 1.83 16 14 C -0.11 -2.86 5.49 30.59 0.17 -2.69 16 15 C -0.12 -3.63 5.39 30.60 0.16 -3.46 16 16 C 0.18 6.41 2.77 44.99 0.12 6.53 16 17 H 0.05 1.89 8.08 -2.39 -0.02 1.87 16 18 N -0.76 -35.32 4.93 -322.94 -1.59 -36.91 16 19 C -0.22 -12.58 10.41 84.03 0.87 -11.70 16 20 H 0.06 3.77 8.06 -2.91 -0.02 3.74 16 21 C -0.07 -3.94 5.50 84.86 0.47 -3.48 16 22 N -0.98 -63.28 13.97 21.65 0.30 -62.98 16 23 Si 0.95 46.50 27.74 68.60 1.90 48.40 16 24 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 25 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 26 H -0.26 -11.50 6.52 99.48 0.65 -10.86 16 27 C -0.13 -4.04 5.50 30.59 0.17 -3.87 16 28 C -0.11 -2.34 5.39 30.59 0.16 -2.18 16 29 O -0.38 -8.36 10.09 -130.77 -1.32 -9.68 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.03 0.72 7.89 -2.39 -0.02 0.70 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 33 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 36 H 0.09 0.58 7.70 -2.39 -0.02 0.56 16 37 H 0.06 0.88 8.05 -2.39 -0.02 0.86 16 38 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.42 4.03 8.60 -92.70 -0.80 3.24 16 40 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.36 16.63 5.66 -92.70 -0.52 16.10 16 45 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 46 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 47 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 48 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 49 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -78.80 384.67 1.22 -77.58 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: -0.46 Total: 25.69 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: 4.38 Total: -7.63 kcal Atomic # 7 Polarization: -111.01 SS G_CDS: -3.54 Total: -114.55 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -1.07 Total: -29.50 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 1.90 Total: 48.40 kcal Total: -78.80 1.22 -77.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034656708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.431 kcal (2) G-P(sol) polarization free energy of solvation -78.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds