Wall clock time and date at job start Tue Mar 31 2020 10:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47336 * 2 1 4 4 H 1.09004 * 109.49169 * 304.93834 * 3 2 1 5 5 C 1.53192 * 109.49826 * 65.00089 * 3 2 1 6 6 N 1.46923 * 108.77684 * 174.58650 * 5 3 2 7 7 C 1.34777 * 120.62664 * 126.41334 * 6 5 3 8 8 O 1.21370 * 120.00372 * 351.28891 * 7 6 5 9 9 C 1.49086 * 119.99698 * 171.28860 * 7 6 5 10 10 O 1.20786 * 120.00345 * 351.46234 * 9 7 6 11 11 C 1.50694 * 120.00038 * 171.46496 * 9 7 6 12 12 C 1.53004 * 109.47285 * 180.02562 * 11 9 7 13 13 C 1.53002 * 109.47043 * 299.99868 * 11 9 7 14 14 C 1.53002 * 109.47323 * 59.99847 * 11 9 7 15 15 C 1.46927 * 118.73913 * 306.39595 * 6 5 3 16 16 C 1.53187 * 108.77487 * 53.60739 * 15 6 5 17 17 C 1.53034 * 109.49914 * 184.84087 * 3 2 1 18 18 H 1.09000 * 109.46346 * 298.70213 * 17 3 2 19 19 N 1.46503 * 109.46135 * 58.66318 * 17 3 2 20 20 C 1.36942 * 120.00241 * 204.99905 * 19 17 3 21 21 H 1.07995 * 119.99659 * 0.02562 * 20 19 17 22 22 C 1.38804 * 119.99911 * 179.97438 * 20 19 17 23 23 N 1.31616 * 120.00510 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99791 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47222 * 60.00204 * 24 22 20 26 26 H 1.48508 * 109.47073 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47169 * 299.99875 * 24 22 20 28 28 H 1.09007 * 109.46634 * 299.99657 * 1 2 3 29 29 H 1.09005 * 109.47440 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47283 * 59.99786 * 1 2 3 31 31 H 1.08999 * 109.47283 * 120.00214 * 2 1 3 32 32 H 1.09004 * 109.47041 * 240.00014 * 2 1 3 33 33 H 1.09003 * 109.58764 * 294.37889 * 5 3 2 34 34 H 1.09005 * 109.58332 * 54.80284 * 5 3 2 35 35 H 1.08994 * 109.47211 * 60.00041 * 12 11 9 36 36 H 1.09006 * 109.46989 * 180.02562 * 12 11 9 37 37 H 1.08998 * 109.47015 * 299.99849 * 12 11 9 38 38 H 1.08995 * 109.47161 * 60.00347 * 13 11 9 39 39 H 1.09010 * 109.47039 * 180.02562 * 13 11 9 40 40 H 1.09000 * 109.47199 * 299.99440 * 13 11 9 41 41 H 1.08998 * 109.47025 * 60.00121 * 14 11 9 42 42 H 1.09002 * 109.46868 * 180.02562 * 14 11 9 43 43 H 1.08997 * 109.46816 * 300.00071 * 14 11 9 44 44 H 1.09003 * 109.58439 * 173.39489 * 15 6 5 45 45 H 1.08999 * 109.58481 * 293.67697 * 15 6 5 46 46 H 1.09002 * 109.50221 * 65.31791 * 16 15 6 47 47 H 1.09002 * 109.49858 * 185.38233 * 16 15 6 48 48 H 0.96999 * 120.00118 * 24.99775 * 19 17 3 49 49 H 0.96998 * 120.00587 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9816 -0.8424 5 6 1.6351 2.1280 1.3088 6 7 2.2416 3.4656 1.3494 7 6 1.4817 4.5579 1.5638 8 8 0.2716 4.4640 1.5680 9 6 2.1275 5.8814 1.7958 10 8 3.3240 5.9517 1.9454 11 6 1.2875 7.1316 1.8437 12 6 2.1891 8.3426 2.0920 13 6 0.5559 7.3059 0.5113 14 6 0.2648 7.0159 2.9758 15 6 3.6923 3.5898 1.1521 16 6 4.0740 2.8880 -0.1549 17 6 3.5655 1.4449 -0.1217 18 1 3.9989 0.9268 0.7337 19 7 3.9577 0.7608 -1.3564 20 6 5.1961 0.1849 -1.4565 21 1 5.8835 0.2348 -0.6250 22 6 5.5675 -0.4637 -2.6261 23 7 4.7296 -0.5249 -3.6392 24 14 7.2565 -1.2498 -2.7623 25 1 7.4045 -2.2900 -1.7127 26 1 7.4060 -1.8730 -4.1020 27 1 8.3021 -0.2111 -2.5806 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5139 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 0.5497 2.2174 1.3539 34 1 1.9909 1.5397 2.1547 35 1 2.9173 8.4249 1.2853 36 1 1.5814 9.2469 2.1271 37 1 2.7107 8.2188 3.0411 38 1 -0.0864 6.4433 0.3340 39 1 -0.0514 8.2105 0.5458 40 1 1.2845 7.3884 -0.2952 41 1 0.7860 6.8918 3.9250 42 1 -0.3430 7.9200 3.0101 43 1 -0.3774 6.1532 2.7984 44 1 3.9642 4.6438 1.0939 45 1 4.2157 3.1230 1.9865 46 1 3.6219 3.4139 -0.9958 47 1 5.1584 2.8896 -0.2655 48 1 3.3402 0.7156 -2.1031 49 1 4.9892 -0.9779 -4.4567 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037804337.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:22 Heat of formation + Delta-G solvation = -61.799172 kcal Electronic energy + Delta-G solvation = -27459.740947 eV Core-core repulsion = 23808.318686 eV Total energy + Delta-G solvation = -3651.422261 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.23300 -39.14197 -37.84807 -36.19280 -34.54449 -33.76651 -31.74710 -29.53076 -28.98936 -27.64094 -27.53457 -26.36377 -24.51462 -23.91534 -22.69880 -21.10915 -20.78873 -19.57700 -18.59873 -17.27129 -16.97294 -16.55053 -15.94969 -15.56705 -15.17388 -14.66581 -14.48651 -14.11859 -13.91556 -13.72716 -13.54726 -13.36823 -13.26061 -13.01205 -12.69838 -12.68917 -12.44483 -12.41069 -12.14666 -11.86501 -11.82139 -11.57813 -11.47935 -11.29979 -11.21011 -10.94014 -10.90292 -10.75552 -10.63799 -10.37148 -10.24487 -10.17363 -9.75100 -9.61368 -9.14134 -8.83550 -8.56383 -6.96724 -5.78158 -3.06923 0.87306 2.63479 2.92470 3.42515 3.47444 3.48011 3.86840 4.30558 4.56958 4.59434 4.61498 5.00373 5.07645 5.17655 5.26798 5.32552 5.38870 5.41232 5.48139 5.53833 5.57229 5.58110 5.59886 5.63913 5.64869 5.69139 5.77264 5.82262 5.88305 5.95642 6.03643 6.07622 6.11058 6.15116 6.29154 6.33817 6.37113 6.42303 6.48698 6.65022 6.81715 6.88357 6.95938 7.05674 7.34179 7.67889 7.90911 8.40040 9.51496 10.08538 10.43690 11.44220 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.018388 B = 0.003602 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.400917 B = 7772.136651 C = 8710.911807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.103 4.103 4 H 0.070 0.930 5 C 0.112 3.888 6 N -0.577 5.577 7 C 0.475 3.525 8 O -0.517 6.517 9 C 0.360 3.640 10 O -0.409 6.409 11 C -0.094 4.094 12 C -0.136 4.136 13 C -0.143 4.143 14 C -0.144 4.144 15 C 0.075 3.925 16 C -0.151 4.151 17 C 0.182 3.818 18 H 0.048 0.952 19 N -0.720 5.720 20 C -0.239 4.239 21 H 0.069 0.931 22 C -0.011 4.011 23 N -0.932 5.932 24 Si 0.905 3.095 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.286 1.286 28 H 0.048 0.952 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.067 0.933 43 H 0.084 0.916 44 H 0.117 0.883 45 H 0.068 0.932 46 H 0.057 0.943 47 H 0.077 0.923 48 H 0.384 0.616 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.320 14.073 12.519 21.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.123 4.123 4 H 0.089 0.911 5 C -0.010 4.010 6 N -0.309 5.309 7 C 0.259 3.741 8 O -0.395 6.395 9 C 0.230 3.770 10 O -0.279 6.279 11 C -0.096 4.096 12 C -0.193 4.193 13 C -0.200 4.200 14 C -0.201 4.201 15 C -0.047 4.047 16 C -0.192 4.192 17 C 0.072 3.928 18 H 0.066 0.934 19 N -0.360 5.360 20 C -0.370 4.370 21 H 0.087 0.913 22 C -0.208 4.208 23 N -0.581 5.581 24 Si 0.736 3.264 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.213 1.213 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.103 0.897 44 H 0.134 0.866 45 H 0.087 0.913 46 H 0.076 0.924 47 H 0.096 0.904 48 H 0.218 0.782 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.112 13.955 12.604 20.895 hybrid contribution 0.928 -0.564 -0.480 1.187 sum -8.184 13.390 12.123 19.831 Atomic orbital electron populations 1.21843 0.96761 1.01072 1.01284 1.21456 0.94391 0.95592 1.03562 1.21773 0.97775 0.96315 0.96471 0.91110 1.21925 0.99534 0.81143 0.98351 1.48323 1.09446 1.06436 1.66736 1.20759 0.87733 0.86110 0.79483 1.90676 1.13254 1.85381 1.50201 1.25004 0.89154 0.91186 0.71614 1.90231 1.17013 1.88032 1.32651 1.20958 0.96761 0.92706 0.99175 1.21789 0.98974 0.95866 1.02717 1.21885 1.00503 1.03704 0.93926 1.21928 0.98206 1.04130 0.95844 1.22769 0.78062 1.04863 0.98977 1.22695 1.02325 0.99060 0.95149 1.20214 0.90663 0.90674 0.91284 0.93409 1.42396 1.16479 1.64475 1.12679 1.19173 0.91828 1.27374 0.98640 0.91292 1.24714 0.98123 1.01509 0.96411 1.69643 1.35334 1.48353 1.04726 0.86306 0.84183 0.79188 0.76716 1.21300 1.21754 1.21319 0.93264 0.93132 0.92946 0.92426 0.89697 0.88883 0.91179 0.91886 0.91527 0.91993 0.90443 0.91142 0.92367 0.92679 0.91377 0.89701 0.86614 0.91350 0.92390 0.90406 0.78213 0.93473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.67 37.16 0.36 -1.70 16 2 C -0.11 -1.79 5.31 -26.73 -0.14 -1.93 16 3 C -0.10 -1.69 1.93 -90.50 -0.17 -1.86 16 4 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 5 C 0.11 1.61 5.33 -3.71 -0.02 1.60 16 6 N -0.58 -8.40 2.97 -173.42 -0.52 -8.91 16 7 C 0.47 6.71 7.36 -11.76 -0.09 6.62 16 8 O -0.52 -7.84 12.91 5.48 0.07 -7.77 16 9 C 0.36 4.46 5.86 -29.81 -0.17 4.29 16 10 O -0.41 -5.51 12.85 5.98 0.08 -5.43 16 11 C -0.09 -0.93 0.76 -155.66 -0.12 -1.04 16 12 C -0.14 -1.15 7.76 37.16 0.29 -0.86 16 13 C -0.14 -1.33 8.29 37.16 0.31 -1.02 16 14 C -0.14 -1.27 8.29 37.16 0.31 -0.96 16 15 C 0.08 1.11 5.96 -3.71 -0.02 1.08 16 16 C -0.15 -2.65 5.66 -26.61 -0.15 -2.80 16 17 C 0.18 3.47 2.19 -67.89 -0.15 3.32 16 18 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 19 N -0.72 -17.26 4.33 -53.39 -0.23 -17.49 16 20 C -0.24 -6.41 9.93 -15.06 -0.15 -6.56 16 21 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 22 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 23 N -0.93 -27.62 13.06 55.49 0.72 -26.90 16 24 Si 0.90 22.08 29.55 -169.99 -5.02 17.06 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 H 0.05 0.61 6.70 -51.93 -0.35 0.26 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.08 1.63 7.22 -51.93 -0.37 1.26 16 33 H 0.09 1.33 5.72 -51.93 -0.30 1.03 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 38 H 0.08 0.84 6.72 -51.93 -0.35 0.49 16 39 H 0.07 0.52 8.14 -51.92 -0.42 0.09 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.88 6.17 -51.93 -0.32 0.56 16 44 H 0.12 1.68 4.39 -54.37 -0.24 1.44 16 45 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 46 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 48 H 0.38 9.92 7.51 -40.82 -0.31 9.61 16 49 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 377.50 15.07 5.69 5.69 Total: -1.00 -29.32 377.50 -7.77 -37.09 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -8.54 Total: 8.92 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -0.02 Total: -2.26 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: -0.02 Total: -53.30 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.15 Total: -13.20 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.32 -7.77 -37.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037804337.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.714 kcal (2) G-P(sol) polarization free energy of solvation -29.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds