Wall clock time and date at job start Tue Mar 31 2020 10:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47336 * 2 1 4 4 H 1.09004 * 109.49169 * 304.93834 * 3 2 1 5 5 C 1.53192 * 109.49826 * 65.00089 * 3 2 1 6 6 N 1.46923 * 108.77684 * 174.58650 * 5 3 2 7 7 C 1.34777 * 120.62664 * 126.41334 * 6 5 3 8 8 O 1.21370 * 120.00372 * 351.28891 * 7 6 5 9 9 C 1.49086 * 119.99698 * 171.28860 * 7 6 5 10 10 O 1.20786 * 120.00345 * 351.46234 * 9 7 6 11 11 C 1.50694 * 120.00038 * 171.46496 * 9 7 6 12 12 C 1.53004 * 109.47285 * 180.02562 * 11 9 7 13 13 C 1.53002 * 109.47043 * 299.99868 * 11 9 7 14 14 C 1.53002 * 109.47323 * 59.99847 * 11 9 7 15 15 C 1.46927 * 118.73913 * 306.39595 * 6 5 3 16 16 C 1.53187 * 108.77487 * 53.60739 * 15 6 5 17 17 C 1.53034 * 109.49914 * 184.84087 * 3 2 1 18 18 H 1.09000 * 109.46346 * 298.70213 * 17 3 2 19 19 N 1.46503 * 109.46135 * 58.66318 * 17 3 2 20 20 C 1.36942 * 120.00241 * 204.99905 * 19 17 3 21 21 H 1.07995 * 119.99659 * 0.02562 * 20 19 17 22 22 C 1.38804 * 119.99911 * 179.97438 * 20 19 17 23 23 N 1.31616 * 120.00510 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99791 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47222 * 60.00204 * 24 22 20 26 26 H 1.48508 * 109.47073 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47169 * 299.99875 * 24 22 20 28 28 H 1.09007 * 109.46634 * 299.99657 * 1 2 3 29 29 H 1.09005 * 109.47440 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47283 * 59.99786 * 1 2 3 31 31 H 1.08999 * 109.47283 * 120.00214 * 2 1 3 32 32 H 1.09004 * 109.47041 * 240.00014 * 2 1 3 33 33 H 1.09003 * 109.58764 * 294.37889 * 5 3 2 34 34 H 1.09005 * 109.58332 * 54.80284 * 5 3 2 35 35 H 1.08994 * 109.47211 * 60.00041 * 12 11 9 36 36 H 1.09006 * 109.46989 * 180.02562 * 12 11 9 37 37 H 1.08998 * 109.47015 * 299.99849 * 12 11 9 38 38 H 1.08995 * 109.47161 * 60.00347 * 13 11 9 39 39 H 1.09010 * 109.47039 * 180.02562 * 13 11 9 40 40 H 1.09000 * 109.47199 * 299.99440 * 13 11 9 41 41 H 1.08998 * 109.47025 * 60.00121 * 14 11 9 42 42 H 1.09002 * 109.46868 * 180.02562 * 14 11 9 43 43 H 1.08997 * 109.46816 * 300.00071 * 14 11 9 44 44 H 1.09003 * 109.58439 * 173.39489 * 15 6 5 45 45 H 1.08999 * 109.58481 * 293.67697 * 15 6 5 46 46 H 1.09002 * 109.50221 * 65.31791 * 16 15 6 47 47 H 1.09002 * 109.49858 * 185.38233 * 16 15 6 48 48 H 0.96999 * 120.00118 * 24.99775 * 19 17 3 49 49 H 0.96998 * 120.00587 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9816 -0.8424 5 6 1.6351 2.1280 1.3088 6 7 2.2416 3.4656 1.3494 7 6 1.4817 4.5579 1.5638 8 8 0.2716 4.4640 1.5680 9 6 2.1275 5.8814 1.7958 10 8 3.3240 5.9517 1.9454 11 6 1.2875 7.1316 1.8437 12 6 2.1891 8.3426 2.0920 13 6 0.5559 7.3059 0.5113 14 6 0.2648 7.0159 2.9758 15 6 3.6923 3.5898 1.1521 16 6 4.0740 2.8880 -0.1549 17 6 3.5655 1.4449 -0.1217 18 1 3.9989 0.9268 0.7337 19 7 3.9577 0.7608 -1.3564 20 6 5.1961 0.1849 -1.4565 21 1 5.8835 0.2348 -0.6250 22 6 5.5675 -0.4637 -2.6261 23 7 4.7296 -0.5249 -3.6392 24 14 7.2565 -1.2498 -2.7623 25 1 7.4045 -2.2900 -1.7127 26 1 7.4060 -1.8730 -4.1020 27 1 8.3021 -0.2111 -2.5806 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5139 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 0.5497 2.2174 1.3539 34 1 1.9909 1.5397 2.1547 35 1 2.9173 8.4249 1.2853 36 1 1.5814 9.2469 2.1271 37 1 2.7107 8.2188 3.0411 38 1 -0.0864 6.4433 0.3340 39 1 -0.0514 8.2105 0.5458 40 1 1.2845 7.3884 -0.2952 41 1 0.7860 6.8918 3.9250 42 1 -0.3430 7.9200 3.0101 43 1 -0.3774 6.1532 2.7984 44 1 3.9642 4.6438 1.0939 45 1 4.2157 3.1230 1.9865 46 1 3.6219 3.4139 -0.9958 47 1 5.1584 2.8896 -0.2655 48 1 3.3402 0.7156 -2.1031 49 1 4.9892 -0.9779 -4.4567 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037804337.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:21 Heat of formation + Delta-G solvation = -78.174450 kcal Electronic energy + Delta-G solvation = -27460.451032 eV Core-core repulsion = 23808.318686 eV Total energy + Delta-G solvation = -3652.132346 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.29881 -40.32593 -39.10325 -37.13616 -35.98455 -35.25423 -33.50237 -31.16308 -30.28953 -28.42614 -28.23313 -27.54065 -26.03549 -25.22087 -24.23998 -22.34767 -22.03539 -20.96764 -19.62611 -19.10513 -18.25528 -17.60838 -16.99679 -16.87500 -16.51792 -16.06303 -15.63950 -15.47213 -15.39661 -14.86955 -14.74794 -14.72533 -14.48935 -14.33152 -13.95192 -13.68683 -13.57196 -13.18781 -13.08900 -13.04751 -12.89801 -12.81436 -12.68423 -12.58620 -12.54938 -12.40933 -12.22465 -12.10392 -11.92239 -11.85461 -11.69809 -11.55311 -11.52725 -11.13682 -10.89523 -10.11107 -9.80597 -8.96894 -7.92095 -5.19960 -0.15533 1.47587 1.49620 1.55030 1.55512 1.84787 2.56844 2.80171 3.40576 3.43772 3.72646 3.75009 3.84539 3.88963 3.95278 4.05436 4.21173 4.27837 4.30117 4.36409 4.46194 4.61077 4.66924 4.72998 4.73909 4.74407 4.78611 4.85292 4.87892 4.93935 4.94373 4.96053 4.99543 5.02698 5.10792 5.20333 5.23334 5.30908 5.32486 5.36925 5.44405 5.48627 5.55050 5.59717 5.88493 6.19010 6.29149 6.77713 7.35808 8.11030 8.34994 9.31094 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.018388 B = 0.003602 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.400917 B = 7772.136651 C = 8710.911807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 C -0.092 4.092 4 H 0.053 0.947 5 C 0.119 3.881 6 N -0.583 5.583 7 C 0.471 3.529 8 O -0.526 6.526 9 C 0.361 3.639 10 O -0.421 6.421 11 C -0.093 4.093 12 C -0.133 4.133 13 C -0.141 4.141 14 C -0.140 4.140 15 C 0.087 3.913 16 C -0.142 4.142 17 C 0.178 3.822 18 H 0.047 0.953 19 N -0.730 5.730 20 C -0.234 4.234 21 H 0.075 0.925 22 C -0.074 4.074 23 N -0.970 5.970 24 Si 0.968 3.032 25 H -0.278 1.278 26 H -0.299 1.299 27 H -0.280 1.280 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.065 0.935 32 H 0.046 0.954 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.055 0.945 36 H 0.090 0.910 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.094 0.906 40 H 0.054 0.946 41 H 0.058 0.942 42 H 0.091 0.909 43 H 0.067 0.933 44 H 0.123 0.877 45 H 0.081 0.919 46 H 0.042 0.958 47 H 0.064 0.936 48 H 0.371 0.629 49 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.715 15.529 14.589 23.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 C -0.112 4.112 4 H 0.072 0.928 5 C -0.003 4.003 6 N -0.316 5.316 7 C 0.256 3.744 8 O -0.404 6.404 9 C 0.233 3.767 10 O -0.292 6.292 11 C -0.094 4.094 12 C -0.190 4.190 13 C -0.198 4.198 14 C -0.197 4.197 15 C -0.034 4.034 16 C -0.182 4.182 17 C 0.070 3.930 18 H 0.065 0.935 19 N -0.369 5.369 20 C -0.366 4.366 21 H 0.093 0.907 22 C -0.266 4.266 23 N -0.620 5.620 24 Si 0.797 3.203 25 H -0.204 1.204 26 H -0.225 1.225 27 H -0.206 1.206 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.117 0.883 34 H 0.105 0.895 35 H 0.074 0.926 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.113 0.887 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.110 0.890 43 H 0.086 0.914 44 H 0.140 0.860 45 H 0.100 0.900 46 H 0.061 0.939 47 H 0.083 0.917 48 H 0.203 0.797 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -9.513 15.440 14.729 23.362 hybrid contribution 0.993 -0.974 -1.078 1.760 sum -8.519 14.465 13.650 21.637 Atomic orbital electron populations 1.21776 0.94560 1.02007 1.01863 1.21357 0.96296 0.94842 1.02006 1.21620 0.95527 0.96773 0.97293 0.92802 1.21863 0.99907 0.81223 0.97315 1.48387 1.09333 1.06759 1.67148 1.21198 0.87688 0.86608 0.78895 1.90674 1.13713 1.85626 1.50402 1.25270 0.89237 0.91252 0.70934 1.90216 1.17519 1.88026 1.33421 1.21053 0.96861 0.91657 0.99834 1.21790 0.98888 0.96020 1.02300 1.21889 1.00348 1.04088 0.93510 1.21913 0.97844 1.04540 0.95442 1.22649 0.78400 1.04914 0.97484 1.22499 1.01222 0.98020 0.96505 1.20426 0.92642 0.90890 0.89085 0.93469 1.42554 1.15514 1.64936 1.13869 1.19549 0.92666 1.25985 0.98435 0.90666 1.25467 1.01578 1.03067 0.96459 1.69806 1.37131 1.49979 1.05127 0.85300 0.80330 0.78417 0.76244 1.20445 1.22535 1.20585 0.91446 0.92076 0.93529 0.91643 0.93488 0.88300 0.89510 0.92599 0.89160 0.92161 0.92222 0.88687 0.92727 0.92313 0.89045 0.91423 0.85970 0.90032 0.93876 0.91717 0.79706 0.94211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.77 9.67 71.98 0.70 -3.07 16 2 C -0.11 -3.41 5.31 30.59 0.16 -3.25 16 3 C -0.09 -3.01 1.93 -10.72 -0.02 -3.03 16 4 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 5 C 0.12 3.24 5.33 86.36 0.46 3.70 16 6 N -0.58 -16.25 2.97 -820.93 -2.44 -18.69 16 7 C 0.47 12.70 7.36 87.16 0.64 13.34 16 8 O -0.53 -15.28 12.91 -3.31 -0.04 -15.32 16 9 C 0.36 8.42 5.86 28.60 0.17 8.59 16 10 O -0.42 -10.69 12.85 -1.53 -0.02 -10.71 16 11 C -0.09 -1.61 0.76 -52.93 -0.04 -1.65 16 12 C -0.13 -1.90 7.76 71.98 0.56 -1.34 16 13 C -0.14 -2.35 8.29 71.98 0.60 -1.76 16 14 C -0.14 -2.13 8.29 71.98 0.60 -1.53 16 15 C 0.09 2.47 5.96 86.36 0.51 2.99 16 16 C -0.14 -4.98 5.66 30.67 0.17 -4.81 16 17 C 0.18 6.83 2.19 45.02 0.10 6.93 16 18 H 0.05 1.83 8.08 -2.39 -0.02 1.81 16 19 N -0.73 -35.92 4.33 -322.82 -1.40 -37.32 16 20 C -0.23 -12.73 9.93 84.03 0.83 -11.90 16 21 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 22 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 23 N -0.97 -59.10 13.06 21.65 0.28 -58.81 16 24 Si 0.97 45.92 29.55 68.60 2.03 47.95 16 25 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 26 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 27 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 28 H 0.07 1.51 6.70 -2.38 -0.02 1.50 16 29 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 30 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.05 1.87 7.22 -2.38 -0.02 1.85 16 33 H 0.10 2.63 5.72 -2.39 -0.01 2.62 16 34 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 35 H 0.05 0.88 8.10 -2.39 -0.02 0.87 16 36 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 37 H 0.06 0.89 8.10 -2.39 -0.02 0.87 16 38 H 0.06 1.22 6.72 -2.39 -0.02 1.20 16 39 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 40 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.07 1.29 6.17 -2.39 -0.01 1.27 16 44 H 0.12 3.40 4.39 -41.15 -0.18 3.22 16 45 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 46 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 48 H 0.37 20.00 7.51 -92.71 -0.70 19.31 16 49 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -63.72 377.50 4.38 -59.35 By element: Atomic # 1 Polarization: 33.97 SS G_CDS: 0.06 Total: 34.04 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: 5.91 Total: -0.49 kcal Atomic # 7 Polarization: -111.26 SS G_CDS: -3.56 Total: -114.82 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -0.06 Total: -26.03 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -63.72 4.38 -59.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037804337.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.829 kcal (2) G-P(sol) polarization free energy of solvation -63.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds