Wall clock time and date at job start Tue Mar 31 2020 10:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46809 * 2 1 4 4 H 1.09003 * 110.43854 * 52.45402 * 3 2 1 5 5 C 1.54808 * 110.48696 * 289.75844 * 3 2 1 6 6 C 1.54995 * 102.09484 * 220.44586 * 5 3 2 7 7 O 1.44375 * 103.49218 * 37.02646 * 6 5 3 8 8 C 1.43749 * 106.97066 * 319.94019 * 7 6 5 9 9 H 1.08995 * 110.00334 * 267.01143 * 8 7 6 10 10 C 1.50706 * 109.87448 * 145.93908 * 8 7 6 11 11 O 1.21278 * 120.00163 * 357.16419 * 10 8 7 12 12 N 1.34781 * 119.99804 * 177.16860 * 10 8 7 13 13 C 1.46499 * 119.99874 * 179.97438 * 12 10 8 14 14 H 1.08992 * 109.47397 * 34.99792 * 13 12 10 15 15 C 1.53000 * 109.46840 * 274.99457 * 13 12 10 16 16 C 1.52997 * 109.47060 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.47317 * 59.99960 * 16 15 13 18 18 C 1.53005 * 109.47159 * 300.00546 * 17 16 15 19 19 C 1.52997 * 109.47452 * 59.99536 * 18 17 16 20 20 H 1.09002 * 109.46695 * 59.99734 * 19 18 17 21 21 N 1.46492 * 109.47244 * 180.02562 * 19 18 17 22 22 C 1.36942 * 120.00117 * 274.99987 * 21 19 18 23 23 H 1.08004 * 119.99763 * 359.97438 * 22 21 19 24 24 C 1.38813 * 120.00411 * 180.02562 * 22 21 19 25 25 N 1.31624 * 119.99605 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00140 * 180.02562 * 24 22 21 27 27 H 1.48491 * 109.47252 * 89.99777 * 26 24 22 28 28 H 1.48498 * 109.46886 * 210.00139 * 26 24 22 29 29 H 1.48504 * 109.46928 * 329.99623 * 26 24 22 30 30 H 1.09004 * 109.46625 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47454 * 300.00186 * 1 2 3 32 32 H 1.08996 * 109.47025 * 60.00727 * 1 2 3 33 33 H 1.08999 * 109.47454 * 239.99814 * 2 1 3 34 34 H 1.09005 * 109.47056 * 119.99153 * 2 1 3 35 35 H 1.08997 * 110.90913 * 338.65028 * 5 3 2 36 36 H 1.09002 * 110.90445 * 102.21464 * 5 3 2 37 37 H 1.09003 * 110.61565 * 155.53255 * 6 5 3 38 38 H 1.08998 * 110.61593 * 278.36730 * 6 5 3 39 39 H 0.97002 * 119.99716 * 359.97438 * 12 10 8 40 40 H 1.09002 * 109.47398 * 300.00326 * 15 13 12 41 41 H 1.09001 * 109.47194 * 60.00507 * 15 13 12 42 42 H 1.08996 * 109.47853 * 180.02562 * 16 15 13 43 43 H 1.09002 * 109.47153 * 300.00319 * 16 15 13 44 44 H 1.09000 * 109.47486 * 180.02562 * 17 16 15 45 45 H 1.09002 * 109.46716 * 60.00091 * 17 16 15 46 46 H 1.09002 * 109.46935 * 299.99411 * 18 17 16 47 47 H 1.09001 * 109.46812 * 179.97438 * 18 17 16 48 48 H 0.96998 * 120.00353 * 95.00142 * 21 19 18 49 49 H 0.96998 * 119.99451 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5799 2.0089 0.8098 5 6 1.7583 2.1168 -1.3648 6 6 3.0604 2.9230 -1.6036 7 8 4.0921 2.0593 -1.0801 8 6 3.5755 1.4718 0.1259 9 1 3.8654 2.0731 0.9875 10 6 4.1039 0.0688 0.2794 11 8 4.8096 -0.4112 -0.5824 12 7 3.7923 -0.6526 1.3744 13 6 4.3055 -2.0167 1.5234 14 1 5.3055 -2.0775 1.0942 15 6 3.3782 -2.9927 0.7964 16 6 3.9138 -4.4173 0.9525 17 6 3.9728 -4.7801 2.4377 18 6 4.9000 -3.8041 3.1647 19 6 4.3644 -2.3794 3.0086 20 1 3.3642 -2.3183 3.4375 21 7 5.2525 -1.4449 3.7042 22 6 5.0926 -1.2176 5.0451 23 1 4.3114 -1.7271 5.5898 24 6 5.9338 -0.3316 5.7042 25 7 6.8855 0.2896 5.0404 26 14 5.7160 -0.0222 7.5335 27 1 6.5414 -0.9891 8.3008 28 1 6.1467 1.3618 7.8560 29 1 4.2865 -0.1933 7.8976 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8901 35 1 1.6146 1.3697 -2.1454 36 1 0.8958 2.7801 -1.3003 37 1 3.2120 3.1006 -2.6683 38 1 3.0330 3.8664 -1.0584 39 1 3.2282 -0.2686 2.0638 40 1 2.3781 -2.9318 1.2256 41 1 3.3359 -2.7340 -0.2616 42 1 3.2535 -5.1126 0.4343 43 1 4.9140 -4.4785 0.5236 44 1 4.3548 -5.7949 2.5489 45 1 2.9726 -4.7190 2.8666 46 1 5.9002 -3.8652 2.7358 47 1 4.9417 -4.0623 4.2229 48 1 5.9539 -0.9870 3.2150 49 1 7.4735 0.9084 5.5010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085231087.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:24 Heat of formation + Delta-G solvation = -86.080077 kcal Electronic energy + Delta-G solvation = -27944.524970 eV Core-core repulsion = 24292.049811 eV Total energy + Delta-G solvation = -3652.475160 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.64968 -38.89702 -37.36590 -35.02995 -34.03433 -33.47075 -31.15557 -30.49479 -30.02099 -28.69403 -27.47735 -24.02538 -23.67567 -23.12138 -22.01288 -21.06835 -20.79164 -20.01344 -19.14258 -17.31354 -16.82532 -16.70027 -16.11074 -15.44309 -15.01027 -14.67166 -14.62974 -14.35577 -14.00561 -13.83606 -13.57961 -13.49408 -13.21155 -12.95512 -12.68175 -12.62774 -12.30985 -12.08412 -12.02643 -11.68645 -11.35336 -11.18542 -11.08820 -10.92720 -10.85589 -10.77910 -10.75922 -10.71049 -10.50529 -10.31640 -10.17672 -9.96052 -9.73797 -9.61574 -9.17383 -8.91002 -8.44341 -6.99592 -5.78928 -3.08884 2.95836 3.26707 3.40245 3.45406 3.47480 4.05705 4.31124 4.53437 4.54480 4.73571 4.95803 5.04116 5.08455 5.11762 5.16003 5.25678 5.32591 5.34495 5.38966 5.52062 5.54125 5.56548 5.59545 5.67752 5.70920 5.75930 5.83232 5.89764 5.90480 5.95542 5.96728 5.98565 6.07798 6.12415 6.23031 6.33608 6.46148 6.48695 6.51979 6.59197 6.76201 6.86704 6.92225 7.10576 7.66117 7.93089 8.38186 8.63006 9.49854 10.06630 10.41741 11.42936 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.011168 B = 0.004993 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.658750 B = 5606.394724 C = 6970.893775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.139 4.139 3 C -0.112 4.112 4 H 0.092 0.908 5 C -0.147 4.147 6 C 0.043 3.957 7 O -0.346 6.346 8 C 0.060 3.940 9 H 0.096 0.904 10 C 0.523 3.477 11 O -0.530 6.530 12 N -0.705 5.705 13 C 0.142 3.858 14 H 0.084 0.916 15 C -0.123 4.123 16 C -0.114 4.114 17 C -0.119 4.119 18 C -0.133 4.133 19 C 0.174 3.826 20 H 0.050 0.950 21 N -0.722 5.722 22 C -0.241 4.241 23 H 0.070 0.930 24 C -0.010 4.010 25 N -0.929 5.929 26 Si 0.904 3.096 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.283 1.283 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.062 0.938 39 H 0.403 0.597 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.054 0.946 45 H 0.057 0.943 46 H 0.057 0.943 47 H 0.065 0.935 48 H 0.385 0.615 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.013 -0.558 -11.310 18.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.177 4.177 3 C -0.131 4.131 4 H 0.111 0.889 5 C -0.185 4.185 6 C -0.034 4.034 7 O -0.264 6.264 8 C -0.001 4.001 9 H 0.114 0.886 10 C 0.308 3.692 11 O -0.406 6.406 12 N -0.358 5.358 13 C 0.036 3.964 14 H 0.102 0.898 15 C -0.162 4.162 16 C -0.152 4.152 17 C -0.157 4.157 18 C -0.174 4.174 19 C 0.063 3.937 20 H 0.068 0.932 21 N -0.362 5.362 22 C -0.372 4.372 23 H 0.088 0.912 24 C -0.207 4.207 25 N -0.577 5.577 26 Si 0.736 3.264 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.208 1.208 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.111 0.889 38 H 0.080 0.920 39 H 0.239 0.761 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.075 0.925 47 H 0.084 0.916 48 H 0.219 0.781 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.320 -0.884 -11.837 17.841 hybrid contribution -0.184 0.661 1.405 1.563 sum -13.503 -0.223 -10.432 17.065 Atomic orbital electron populations 1.21748 0.95494 1.01684 1.01573 1.22136 0.96322 0.94989 1.04217 1.22556 0.93446 0.98280 0.98786 0.88925 1.23220 0.98475 0.99776 0.97007 1.23598 0.86481 0.93388 0.99925 1.89018 1.37481 1.60956 1.38922 1.22766 0.93419 0.93447 0.90504 0.88597 1.20132 0.80232 0.86690 0.82177 1.90678 1.36943 1.71618 1.41395 1.46046 1.52521 1.15518 1.21722 1.21293 0.97942 0.79943 0.97178 0.89838 1.21875 0.99079 0.94762 1.00475 1.21473 1.01163 0.95732 0.96851 1.21578 1.00154 0.98895 0.95079 1.22224 0.98762 0.96031 1.00403 1.20460 0.94772 0.89712 0.88767 0.93202 1.42423 1.37394 1.49410 1.07010 1.19196 1.12692 1.20187 0.85134 0.91224 1.24738 0.98292 0.99826 0.97836 1.69678 1.21033 1.31933 1.35008 0.86240 0.77401 0.77183 0.85618 1.21774 1.21870 1.20826 0.92653 0.92634 0.93024 0.91505 0.89294 0.90255 0.90083 0.88852 0.91990 0.76088 0.92039 0.91945 0.92439 0.91985 0.92731 0.92416 0.92457 0.91640 0.78102 0.93490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.79 37.16 0.36 -0.92 16 2 C -0.14 -1.50 4.15 -26.73 -0.11 -1.61 16 3 C -0.11 -1.20 3.04 -89.09 -0.27 -1.47 16 4 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 5 C -0.15 -1.38 6.03 -24.72 -0.15 -1.53 16 6 C 0.04 0.46 7.72 38.21 0.29 0.76 16 7 O -0.35 -5.52 10.74 -54.81 -0.59 -6.11 16 8 C 0.06 0.88 3.84 -27.31 -0.10 0.77 16 9 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 10 C 0.52 9.09 5.66 -10.98 -0.06 9.03 16 11 O -0.53 -11.27 16.19 -14.02 -0.23 -11.50 16 12 N -0.71 -11.30 3.10 -53.81 -0.17 -11.47 16 13 C 0.14 2.37 1.98 -67.93 -0.13 2.24 16 14 H 0.08 1.65 7.58 -51.93 -0.39 1.25 16 15 C -0.12 -1.70 5.46 -26.73 -0.15 -1.85 16 16 C -0.11 -1.47 5.92 -26.73 -0.16 -1.63 16 17 C -0.12 -1.60 5.92 -26.73 -0.16 -1.76 16 18 C -0.13 -2.29 5.50 -26.73 -0.15 -2.43 16 19 C 0.17 3.21 2.29 -67.94 -0.16 3.05 16 20 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 21 N -0.72 -17.05 4.95 -53.43 -0.26 -17.31 16 22 C -0.24 -6.32 9.93 -15.06 -0.15 -6.47 16 23 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 24 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 25 N -0.93 -27.55 13.06 55.49 0.72 -26.82 16 26 Si 0.90 21.78 29.55 -169.99 -5.02 16.76 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 29 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.41 7.62 -51.93 -0.40 0.01 16 33 H 0.07 0.84 7.70 -51.93 -0.40 0.44 16 34 H 0.09 1.03 4.77 -51.93 -0.25 0.78 16 35 H 0.08 0.77 7.77 -51.93 -0.40 0.37 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.40 6.05 7.64 -40.82 -0.31 5.74 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 48 H 0.39 10.15 7.80 -40.82 -0.32 9.83 16 49 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 378.86 15.07 5.71 5.71 Total: -1.00 -31.73 378.86 -9.80 -41.53 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: -8.78 Total: 13.45 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -1.18 Total: -4.23 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: 0.29 Total: -55.60 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.82 Total: -17.61 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.73 -9.80 -41.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085231087.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.552 kcal (2) G-P(sol) polarization free energy of solvation -31.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds