Wall clock time and date at job start Tue Mar 31 2020 10:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46809 * 2 1 4 4 H 1.09003 * 110.43854 * 52.45402 * 3 2 1 5 5 C 1.54808 * 110.48696 * 289.75844 * 3 2 1 6 6 C 1.54995 * 102.09484 * 220.44586 * 5 3 2 7 7 O 1.44375 * 103.49218 * 37.02646 * 6 5 3 8 8 C 1.43749 * 106.97066 * 319.94019 * 7 6 5 9 9 H 1.08995 * 110.00334 * 267.01143 * 8 7 6 10 10 C 1.50706 * 109.87448 * 145.93908 * 8 7 6 11 11 O 1.21278 * 120.00163 * 357.16419 * 10 8 7 12 12 N 1.34781 * 119.99804 * 177.16860 * 10 8 7 13 13 C 1.46499 * 119.99874 * 179.97438 * 12 10 8 14 14 H 1.08992 * 109.47397 * 34.99792 * 13 12 10 15 15 C 1.53000 * 109.46840 * 274.99457 * 13 12 10 16 16 C 1.52997 * 109.47060 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.47317 * 59.99960 * 16 15 13 18 18 C 1.53005 * 109.47159 * 300.00546 * 17 16 15 19 19 C 1.52997 * 109.47452 * 59.99536 * 18 17 16 20 20 H 1.09002 * 109.46695 * 59.99734 * 19 18 17 21 21 N 1.46492 * 109.47244 * 180.02562 * 19 18 17 22 22 C 1.36942 * 120.00117 * 274.99987 * 21 19 18 23 23 H 1.08004 * 119.99763 * 359.97438 * 22 21 19 24 24 C 1.38813 * 120.00411 * 180.02562 * 22 21 19 25 25 N 1.31624 * 119.99605 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00140 * 180.02562 * 24 22 21 27 27 H 1.48491 * 109.47252 * 89.99777 * 26 24 22 28 28 H 1.48498 * 109.46886 * 210.00139 * 26 24 22 29 29 H 1.48504 * 109.46928 * 329.99623 * 26 24 22 30 30 H 1.09004 * 109.46625 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47454 * 300.00186 * 1 2 3 32 32 H 1.08996 * 109.47025 * 60.00727 * 1 2 3 33 33 H 1.08999 * 109.47454 * 239.99814 * 2 1 3 34 34 H 1.09005 * 109.47056 * 119.99153 * 2 1 3 35 35 H 1.08997 * 110.90913 * 338.65028 * 5 3 2 36 36 H 1.09002 * 110.90445 * 102.21464 * 5 3 2 37 37 H 1.09003 * 110.61565 * 155.53255 * 6 5 3 38 38 H 1.08998 * 110.61593 * 278.36730 * 6 5 3 39 39 H 0.97002 * 119.99716 * 359.97438 * 12 10 8 40 40 H 1.09002 * 109.47398 * 300.00326 * 15 13 12 41 41 H 1.09001 * 109.47194 * 60.00507 * 15 13 12 42 42 H 1.08996 * 109.47853 * 180.02562 * 16 15 13 43 43 H 1.09002 * 109.47153 * 300.00319 * 16 15 13 44 44 H 1.09000 * 109.47486 * 180.02562 * 17 16 15 45 45 H 1.09002 * 109.46716 * 60.00091 * 17 16 15 46 46 H 1.09002 * 109.46935 * 299.99411 * 18 17 16 47 47 H 1.09001 * 109.46812 * 179.97438 * 18 17 16 48 48 H 0.96998 * 120.00353 * 95.00142 * 21 19 18 49 49 H 0.96998 * 119.99451 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5799 2.0089 0.8098 5 6 1.7583 2.1168 -1.3648 6 6 3.0604 2.9230 -1.6036 7 8 4.0921 2.0593 -1.0801 8 6 3.5755 1.4718 0.1259 9 1 3.8654 2.0731 0.9875 10 6 4.1039 0.0688 0.2794 11 8 4.8096 -0.4112 -0.5824 12 7 3.7923 -0.6526 1.3744 13 6 4.3055 -2.0167 1.5234 14 1 5.3055 -2.0775 1.0942 15 6 3.3782 -2.9927 0.7964 16 6 3.9138 -4.4173 0.9525 17 6 3.9728 -4.7801 2.4377 18 6 4.9000 -3.8041 3.1647 19 6 4.3644 -2.3794 3.0086 20 1 3.3642 -2.3183 3.4375 21 7 5.2525 -1.4449 3.7042 22 6 5.0926 -1.2176 5.0451 23 1 4.3114 -1.7271 5.5898 24 6 5.9338 -0.3316 5.7042 25 7 6.8855 0.2896 5.0404 26 14 5.7160 -0.0222 7.5335 27 1 6.5414 -0.9891 8.3008 28 1 6.1467 1.3618 7.8560 29 1 4.2865 -0.1933 7.8976 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8901 35 1 1.6146 1.3697 -2.1454 36 1 0.8958 2.7801 -1.3003 37 1 3.2120 3.1006 -2.6683 38 1 3.0330 3.8664 -1.0584 39 1 3.2282 -0.2686 2.0638 40 1 2.3781 -2.9318 1.2256 41 1 3.3359 -2.7340 -0.2616 42 1 3.2535 -5.1126 0.4343 43 1 4.9140 -4.4785 0.5236 44 1 4.3548 -5.7949 2.5489 45 1 2.9726 -4.7190 2.8666 46 1 5.9002 -3.8652 2.7358 47 1 4.9417 -4.0623 4.2229 48 1 5.9539 -0.9870 3.2150 49 1 7.4735 0.9084 5.5010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085231087.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:23 Heat of formation + Delta-G solvation = -105.692821 kcal Electronic energy + Delta-G solvation = -27945.375443 eV Core-core repulsion = 24292.049811 eV Total energy + Delta-G solvation = -3653.325632 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.84963 -40.13825 -38.73802 -36.08814 -35.79767 -34.75903 -32.98787 -31.47056 -31.05470 -30.00018 -28.95072 -25.66040 -24.92365 -24.07767 -23.11839 -22.48804 -21.89714 -21.30340 -20.40904 -19.14630 -18.14546 -17.76116 -17.40757 -16.87074 -16.30331 -16.04050 -15.72774 -15.54278 -15.43668 -15.24153 -14.85187 -14.61583 -14.47153 -14.33493 -14.04427 -13.66768 -13.51290 -13.46250 -13.03153 -12.91774 -12.79758 -12.55271 -12.24406 -12.19262 -12.16135 -12.05703 -12.02258 -12.00226 -11.68200 -11.60182 -11.53055 -11.40086 -11.09155 -11.03887 -10.88699 -10.43002 -9.81563 -8.98858 -7.90183 -5.19462 1.48976 1.50391 1.58365 1.60613 2.03082 2.57872 3.04240 3.40029 3.43306 3.61161 3.70360 3.72073 3.84015 4.01084 4.14837 4.23558 4.26925 4.29109 4.33020 4.41957 4.44627 4.49387 4.51949 4.57310 4.60096 4.70647 4.75106 4.81585 4.90137 4.95828 4.99381 5.02537 5.15177 5.17419 5.22862 5.24923 5.28470 5.30605 5.32114 5.46482 5.47294 5.53942 5.57509 5.67359 5.82800 6.29286 6.59232 7.27139 7.35855 8.09741 8.33957 9.33053 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.011168 B = 0.004993 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.658750 B = 5606.394724 C = 6970.893775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C -0.105 4.105 4 H 0.116 0.884 5 C -0.138 4.138 6 C 0.033 3.967 7 O -0.387 6.387 8 C 0.058 3.942 9 H 0.094 0.906 10 C 0.518 3.482 11 O -0.578 6.578 12 N -0.696 5.696 13 C 0.149 3.851 14 H 0.046 0.954 15 C -0.111 4.111 16 C -0.112 4.112 17 C -0.108 4.108 18 C -0.129 4.129 19 C 0.173 3.827 20 H 0.063 0.937 21 N -0.732 5.732 22 C -0.229 4.229 23 H 0.082 0.918 24 C -0.075 4.075 25 N -0.972 5.972 26 Si 0.969 3.031 27 H -0.294 1.294 28 H -0.302 1.302 29 H -0.264 1.264 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.044 0.956 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.114 0.886 37 H 0.105 0.895 38 H 0.079 0.921 39 H 0.410 0.590 40 H 0.083 0.917 41 H 0.054 0.946 42 H 0.087 0.913 43 H 0.049 0.951 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.037 0.963 47 H 0.051 0.949 48 H 0.367 0.633 49 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.500 -1.068 -11.030 20.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C -0.124 4.124 4 H 0.134 0.866 5 C -0.175 4.175 6 C -0.043 4.043 7 O -0.305 6.305 8 C -0.004 4.004 9 H 0.112 0.888 10 C 0.305 3.695 11 O -0.457 6.457 12 N -0.349 5.349 13 C 0.044 3.956 14 H 0.064 0.936 15 C -0.150 4.150 16 C -0.150 4.150 17 C -0.146 4.146 18 C -0.170 4.170 19 C 0.065 3.935 20 H 0.081 0.919 21 N -0.371 5.371 22 C -0.361 4.361 23 H 0.099 0.901 24 C -0.267 4.267 25 N -0.623 5.623 26 Si 0.799 3.201 27 H -0.221 1.221 28 H -0.229 1.229 29 H -0.188 1.188 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.132 0.868 37 H 0.123 0.877 38 H 0.097 0.903 39 H 0.247 0.753 40 H 0.102 0.898 41 H 0.072 0.928 42 H 0.106 0.894 43 H 0.067 0.933 44 H 0.090 0.910 45 H 0.094 0.906 46 H 0.056 0.944 47 H 0.069 0.931 48 H 0.198 0.802 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -16.880 -1.433 -11.546 20.501 hybrid contribution 0.916 0.783 1.255 1.740 sum -15.964 -0.651 -10.291 19.004 Atomic orbital electron populations 1.21706 0.93324 1.02251 1.02606 1.22051 0.98078 0.94582 1.02550 1.22623 0.90311 0.98872 1.00602 0.86565 1.23210 0.98789 0.99779 0.95708 1.23913 0.86096 0.93520 1.00731 1.88977 1.40080 1.62032 1.39449 1.22850 0.96106 0.91101 0.90297 0.88810 1.20749 0.79345 0.87804 0.81585 1.90642 1.39139 1.72894 1.43074 1.46004 1.52017 1.15312 1.21520 1.21155 0.97154 0.81272 0.96068 0.93599 1.21787 0.99255 0.94447 0.99539 1.21486 1.01205 0.95505 0.96770 1.21507 0.99948 0.98446 0.94731 1.22102 0.98831 0.96071 0.99959 1.20676 0.94176 0.89436 0.89257 0.91899 1.42608 1.37672 1.50286 1.06531 1.19600 1.11735 1.18571 0.86160 0.90056 1.25502 0.98701 1.00657 1.01861 1.69856 1.22566 1.33363 1.36505 0.85205 0.78028 0.76109 0.80799 1.22135 1.22872 1.18843 0.92399 0.91571 0.91963 0.93752 0.90324 0.90817 0.86765 0.87732 0.90294 0.75314 0.89802 0.92763 0.89397 0.93254 0.90982 0.90635 0.94441 0.93053 0.80196 0.94393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.79 71.98 0.70 -1.33 16 2 C -0.13 -2.70 4.15 30.59 0.13 -2.58 16 3 C -0.11 -2.08 3.04 -9.80 -0.03 -2.11 16 4 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 5 C -0.14 -2.25 6.03 31.89 0.19 -2.06 16 6 C 0.03 0.67 7.72 72.66 0.56 1.23 16 7 O -0.39 -12.59 10.74 -130.26 -1.40 -13.99 16 8 C 0.06 1.70 3.84 30.22 0.12 1.82 16 9 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 10 C 0.52 18.73 5.66 87.66 0.50 19.23 16 11 O -0.58 -26.00 16.19 15.69 0.25 -25.74 16 12 N -0.70 -22.75 3.10 -442.53 -1.37 -24.12 16 13 C 0.15 5.08 1.98 44.99 0.09 5.17 16 14 H 0.05 1.93 7.58 -2.39 -0.02 1.91 16 15 C -0.11 -2.96 5.46 30.59 0.17 -2.79 16 16 C -0.11 -2.65 5.92 30.59 0.18 -2.47 16 17 C -0.11 -2.64 5.92 30.60 0.18 -2.46 16 18 C -0.13 -4.36 5.50 30.60 0.17 -4.20 16 19 C 0.17 6.36 2.29 44.99 0.10 6.47 16 20 H 0.06 2.18 8.08 -2.39 -0.02 2.16 16 21 N -0.73 -35.28 4.95 -322.95 -1.60 -36.88 16 22 C -0.23 -11.99 9.93 84.03 0.83 -11.16 16 23 H 0.08 4.02 7.83 -2.91 -0.02 3.99 16 24 C -0.08 -4.20 5.50 84.86 0.47 -3.73 16 25 N -0.97 -59.44 13.06 21.65 0.28 -59.16 16 26 Si 0.97 45.06 29.55 68.60 2.03 47.09 16 27 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 28 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 29 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 30 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 0.77 7.62 -2.39 -0.02 0.75 16 33 H 0.04 1.09 7.70 -2.39 -0.02 1.07 16 34 H 0.08 1.71 4.77 -2.38 -0.01 1.70 16 35 H 0.07 1.30 7.77 -2.39 -0.02 1.29 16 36 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.41 12.24 7.64 -92.71 -0.71 11.53 16 40 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.05 1.30 8.14 -2.39 -0.02 1.29 16 44 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 48 H 0.37 20.23 7.80 -92.71 -0.72 19.51 16 49 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -72.10 378.86 2.05 -70.04 By element: Atomic # 1 Polarization: 44.22 SS G_CDS: -0.50 Total: 43.72 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: 4.36 Total: -0.96 kcal Atomic # 7 Polarization: -117.47 SS G_CDS: -2.69 Total: -120.16 kcal Atomic # 8 Polarization: -38.58 SS G_CDS: -1.14 Total: -39.73 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -72.10 2.05 -70.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085231087.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.652 kcal (2) G-P(sol) polarization free energy of solvation -72.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds