Wall clock time and date at job start Tue Mar 31 2020 10:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47149 * 2 1 4 4 H 1.08996 * 110.27219 * 52.91183 * 3 2 1 5 5 O 1.43643 * 110.39451 * 290.76643 * 3 2 1 6 6 C 1.43238 * 109.97041 * 216.61613 * 5 3 2 7 7 C 1.54377 * 107.59101 * 1.70582 * 6 5 3 8 8 C 1.54943 * 110.31052 * 175.00178 * 3 2 1 9 9 H 1.09005 * 111.12754 * 37.50237 * 8 3 2 10 10 C 1.50697 * 111.12652 * 273.38026 * 8 3 2 11 11 O 1.21285 * 119.99886 * 359.97438 * 10 8 3 12 12 N 1.34774 * 120.00163 * 180.02562 * 10 8 3 13 13 C 1.46498 * 120.00173 * 179.97438 * 12 10 8 14 14 H 1.09007 * 109.47102 * 34.99785 * 13 12 10 15 15 C 1.53000 * 109.47251 * 275.00033 * 13 12 10 16 16 C 1.52998 * 109.47154 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.47375 * 60.00110 * 16 15 13 18 18 C 1.53000 * 109.46889 * 300.00051 * 17 16 15 19 19 C 1.53000 * 109.47312 * 154.99678 * 13 12 10 20 20 H 1.08997 * 109.46857 * 60.00535 * 19 13 12 21 21 N 1.46490 * 109.47311 * 299.99993 * 19 13 12 22 22 C 1.36935 * 120.00121 * 154.99465 * 21 19 13 23 23 H 1.07997 * 120.00139 * 0.02562 * 22 21 19 24 24 C 1.38816 * 120.00401 * 180.02562 * 22 21 19 25 25 N 1.31624 * 119.99569 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00172 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47055 * 180.02562 * 26 24 22 28 28 H 1.48505 * 109.46653 * 299.99639 * 26 24 22 29 29 H 1.48495 * 109.47483 * 60.00002 * 26 24 22 30 30 H 1.08996 * 109.46497 * 299.99897 * 1 2 3 31 31 H 1.08998 * 109.46946 * 59.99858 * 1 2 3 32 32 H 1.08995 * 109.46771 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47175 * 240.00367 * 2 1 3 34 34 H 1.09000 * 109.47389 * 120.00425 * 2 1 3 35 35 H 1.09001 * 109.83616 * 121.22466 * 6 5 3 36 36 H 1.09006 * 109.82829 * 242.19418 * 6 5 3 37 37 H 1.08999 * 110.85017 * 263.17487 * 7 6 5 38 38 H 1.08998 * 110.84735 * 139.55242 * 7 6 5 39 39 H 0.97001 * 120.00489 * 359.97438 * 12 10 8 40 40 H 1.08996 * 109.47394 * 59.99486 * 15 13 12 41 41 H 1.08997 * 109.47338 * 299.99722 * 15 13 12 42 42 H 1.09001 * 109.47552 * 299.99526 * 16 15 13 43 43 H 1.09007 * 109.46811 * 179.97438 * 16 15 13 44 44 H 1.08993 * 109.47257 * 179.97438 * 17 16 15 45 45 H 1.08996 * 109.46845 * 59.99431 * 17 16 15 46 46 H 1.09007 * 109.46865 * 299.99797 * 18 17 16 47 47 H 1.08996 * 109.47394 * 180.02562 * 18 17 16 48 48 H 0.97000 * 120.00577 * 335.00065 * 21 19 13 49 49 H 0.97001 * 119.99885 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5846 2.0041 0.8156 5 8 1.7568 2.0736 -1.2589 6 6 2.8317 2.9486 -1.6203 7 6 3.9113 2.8397 -0.5222 8 6 3.5841 1.4670 0.1266 9 1 4.0373 0.6491 -0.4336 10 6 4.0112 1.4336 1.5714 11 8 3.1760 1.3937 2.4499 12 7 5.3213 1.4489 1.8874 13 6 5.7365 1.4170 3.2919 14 1 5.0432 0.7982 3.8618 15 6 5.7339 2.8388 3.8570 16 6 6.1669 2.8052 5.3241 17 6 7.5761 2.2183 5.4267 18 6 7.5788 0.7965 4.8615 19 6 7.1458 0.8302 3.3939 20 1 7.8391 1.4489 2.8242 21 7 7.1484 -0.5312 2.8529 22 6 8.3072 -1.0705 2.3616 23 1 9.2193 -0.4925 2.3733 24 6 8.3095 -2.3604 1.8484 25 7 7.1977 -3.0647 1.8337 26 14 9.8905 -3.0964 1.1789 27 1 9.6278 -4.4749 0.6930 28 1 10.3877 -2.2623 0.0553 29 1 10.9125 -3.1368 2.2554 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.2490 2.6451 -2.5804 36 1 2.4687 3.9746 -1.6813 37 1 3.8089 3.6461 0.2039 38 1 4.9099 2.8341 -0.9591 39 1 5.9894 1.4812 1.1848 40 1 4.7299 3.2568 3.7844 41 1 6.4271 3.4575 3.2873 42 1 5.4733 2.1867 5.8937 43 1 6.1654 3.8183 5.7265 44 1 7.8848 2.1949 6.4717 45 1 8.2696 2.8369 4.8571 46 1 6.8851 0.1779 5.4311 47 1 8.5826 0.3782 4.9350 48 1 6.3292 -1.0506 2.8426 49 1 6.3768 -2.6826 2.1817 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085280583.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:42 Heat of formation + Delta-G solvation = -101.264147 kcal Electronic energy + Delta-G solvation = -27424.841768 eV Core-core repulsion = 23771.708178 eV Total energy + Delta-G solvation = -3653.133591 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.50173 -39.09089 -37.66076 -34.36987 -33.98418 -33.48404 -32.40634 -31.16460 -29.41474 -28.43464 -27.44582 -24.15646 -23.61897 -22.85013 -21.82193 -21.28832 -20.79467 -20.07509 -19.45339 -17.61778 -17.31358 -16.59263 -15.96809 -15.61227 -15.03395 -14.88733 -14.44965 -14.20490 -13.93885 -13.78113 -13.67792 -13.57299 -13.36753 -13.20674 -13.06870 -12.75793 -12.42303 -12.22498 -12.02666 -11.80040 -11.49097 -11.07586 -11.02933 -10.99617 -10.91247 -10.81849 -10.73996 -10.68074 -10.49222 -10.33532 -10.01918 -9.92366 -9.66894 -9.46250 -9.23972 -8.96622 -8.69240 -7.10638 -6.15031 -3.16329 2.78670 3.32128 3.46861 3.49908 3.67814 3.72107 4.32077 4.57611 4.59493 4.65656 4.93906 4.95427 5.03482 5.08136 5.12413 5.21047 5.27102 5.35790 5.42310 5.46626 5.50153 5.56089 5.59486 5.61620 5.68653 5.75110 5.77274 5.83999 5.88121 5.88959 5.95478 6.01644 6.07533 6.20708 6.23644 6.34608 6.36010 6.36852 6.39497 6.45118 6.74976 6.78686 6.94469 6.96766 7.73757 7.78147 8.43731 8.69668 9.15291 10.02078 10.17113 11.32486 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.010355 B = 0.004683 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.244413 B = 5977.167472 C = 7611.679648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.121 4.121 3 C 0.104 3.896 4 H 0.085 0.915 5 O -0.379 6.379 6 C 0.054 3.946 7 C -0.144 4.144 8 C -0.146 4.146 9 H 0.114 0.886 10 C 0.528 3.472 11 O -0.545 6.545 12 N -0.705 5.705 13 C 0.139 3.861 14 H 0.083 0.917 15 C -0.123 4.123 16 C -0.114 4.114 17 C -0.119 4.119 18 C -0.132 4.132 19 C 0.179 3.821 20 H 0.051 0.949 21 N -0.733 5.733 22 C -0.333 4.333 23 H 0.064 0.936 24 C -0.042 4.042 25 N -0.941 5.941 26 Si 1.078 2.922 27 H -0.285 1.285 28 H -0.296 1.296 29 H -0.296 1.296 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.403 0.597 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.058 0.942 46 H 0.055 0.945 47 H 0.066 0.934 48 H 0.367 0.633 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.311 13.949 -2.134 15.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.159 4.159 3 C 0.046 3.954 4 H 0.102 0.898 5 O -0.298 6.298 6 C -0.023 4.023 7 C -0.182 4.182 8 C -0.168 4.168 9 H 0.132 0.868 10 C 0.313 3.687 11 O -0.423 6.423 12 N -0.354 5.354 13 C 0.034 3.966 14 H 0.101 0.899 15 C -0.162 4.162 16 C -0.152 4.152 17 C -0.157 4.157 18 C -0.173 4.173 19 C 0.069 3.931 20 H 0.069 0.931 21 N -0.375 5.375 22 C -0.464 4.464 23 H 0.082 0.918 24 C -0.240 4.240 25 N -0.586 5.586 26 Si 0.909 3.091 27 H -0.211 1.211 28 H -0.223 1.223 29 H -0.223 1.223 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.108 0.892 39 H 0.238 0.762 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.084 0.916 48 H 0.201 0.799 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.201 12.610 -2.358 14.248 hybrid contribution -0.137 1.247 0.550 1.370 sum -6.338 13.857 -1.808 15.344 Atomic orbital electron populations 1.21679 0.95242 1.01449 1.01932 1.21654 0.96864 0.94386 1.02988 1.22829 0.91418 0.94793 0.86351 0.89755 1.88411 1.42372 1.60418 1.38628 1.23064 0.87128 0.94484 0.97579 1.23084 1.00705 0.96059 0.98349 1.23069 0.98548 1.00161 0.94994 0.86803 1.20005 0.82791 0.75896 0.89988 1.90678 1.51515 1.50276 1.49862 1.45923 1.06751 1.73585 1.09114 1.21332 0.97844 0.96148 0.81300 0.89937 1.21856 1.01275 0.96808 0.96244 1.21475 0.97286 1.00472 0.95959 1.21575 0.96343 0.97436 1.00371 1.22209 1.02216 0.94917 0.98006 1.20399 0.92088 0.87689 0.92965 0.93094 1.42414 1.09767 1.11502 1.73794 1.19989 0.88821 1.00024 1.37529 0.91819 1.25729 1.04338 0.93494 1.00452 1.70884 0.99826 1.38975 1.48885 0.83269 0.73781 0.76271 0.75796 1.21077 1.22326 1.22304 0.92801 0.92350 0.92798 0.91324 0.90221 0.91056 0.91353 0.90151 0.89162 0.76227 0.91956 0.92037 0.91981 0.92290 0.92582 0.92354 0.92624 0.91559 0.79940 0.93343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.85 37.16 0.37 -1.38 16 2 C -0.12 -1.64 5.67 -26.73 -0.15 -1.79 16 3 C 0.10 1.41 2.55 -25.70 -0.07 1.34 16 4 H 0.08 1.25 7.37 -51.93 -0.38 0.87 16 5 O -0.38 -5.00 10.81 -35.23 -0.38 -5.38 16 6 C 0.05 0.55 7.79 37.88 0.30 0.85 16 7 C -0.14 -1.48 6.49 -24.79 -0.16 -1.64 16 8 C -0.15 -1.92 2.90 -89.52 -0.26 -2.18 16 9 H 0.11 1.51 8.06 -51.93 -0.42 1.09 16 10 C 0.53 8.33 7.12 -10.99 -0.08 8.26 16 11 O -0.55 -10.17 15.38 5.55 0.09 -10.09 16 12 N -0.70 -10.93 4.91 -53.81 -0.26 -11.19 16 13 C 0.14 2.28 1.98 -67.93 -0.13 2.15 16 14 H 0.08 1.56 7.58 -51.92 -0.39 1.17 16 15 C -0.12 -1.69 5.49 -26.73 -0.15 -1.83 16 16 C -0.11 -1.45 5.92 -26.73 -0.16 -1.61 16 17 C -0.12 -1.60 5.92 -26.73 -0.16 -1.76 16 18 C -0.13 -2.28 5.50 -26.70 -0.15 -2.42 16 19 C 0.18 3.31 2.30 -67.91 -0.16 3.16 16 20 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 21 N -0.73 -17.13 4.95 -53.41 -0.26 -17.40 16 22 C -0.33 -8.80 9.93 -15.06 -0.15 -8.95 16 23 H 0.06 1.66 7.83 -52.49 -0.41 1.25 16 24 C -0.04 -1.17 5.50 -17.43 -0.10 -1.27 16 25 N -0.94 -28.34 13.70 55.49 0.76 -27.58 16 26 Si 1.08 25.14 29.92 -169.99 -5.09 20.05 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.30 -6.55 7.11 56.52 0.40 -6.15 16 29 H -0.30 -6.64 7.11 56.52 0.40 -6.23 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.69 7.99 -51.93 -0.42 0.27 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.82 8.03 -51.93 -0.42 0.40 16 38 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.40 5.99 8.60 -40.82 -0.35 5.64 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16 47 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 48 H 0.37 9.26 6.63 -40.82 -0.27 8.99 16 49 H 0.26 7.66 6.77 -40.82 -0.28 7.38 16 LS Contribution 384.97 15.07 5.80 5.80 Total: -1.00 -30.81 384.97 -9.44 -40.25 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: -8.89 Total: 14.62 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -1.20 Total: -9.09 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: 0.23 Total: -56.17 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.30 Total: -15.46 kcal Atomic # 14 Polarization: 25.14 SS G_CDS: -5.09 Total: 20.05 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.81 -9.44 -40.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085280583.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.017 kcal (2) G-P(sol) polarization free energy of solvation -30.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds