Wall clock time and date at job start Tue Mar 31 2020 10:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47149 * 2 1 4 4 H 1.08996 * 110.27219 * 52.91183 * 3 2 1 5 5 O 1.43643 * 110.39451 * 290.76643 * 3 2 1 6 6 C 1.43238 * 109.97041 * 216.61613 * 5 3 2 7 7 C 1.54377 * 107.59101 * 1.70582 * 6 5 3 8 8 C 1.54943 * 110.31052 * 175.00178 * 3 2 1 9 9 H 1.09005 * 111.12754 * 37.50237 * 8 3 2 10 10 C 1.50697 * 111.12652 * 273.38026 * 8 3 2 11 11 O 1.21285 * 119.99886 * 359.97438 * 10 8 3 12 12 N 1.34774 * 120.00163 * 180.02562 * 10 8 3 13 13 C 1.46498 * 120.00173 * 179.97438 * 12 10 8 14 14 H 1.09007 * 109.47102 * 34.99785 * 13 12 10 15 15 C 1.53000 * 109.47251 * 275.00033 * 13 12 10 16 16 C 1.52998 * 109.47154 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.47375 * 60.00110 * 16 15 13 18 18 C 1.53000 * 109.46889 * 300.00051 * 17 16 15 19 19 C 1.53000 * 109.47312 * 154.99678 * 13 12 10 20 20 H 1.08997 * 109.46857 * 60.00535 * 19 13 12 21 21 N 1.46490 * 109.47311 * 299.99993 * 19 13 12 22 22 C 1.36935 * 120.00121 * 154.99465 * 21 19 13 23 23 H 1.07997 * 120.00139 * 0.02562 * 22 21 19 24 24 C 1.38816 * 120.00401 * 180.02562 * 22 21 19 25 25 N 1.31624 * 119.99569 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00172 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47055 * 180.02562 * 26 24 22 28 28 H 1.48505 * 109.46653 * 299.99639 * 26 24 22 29 29 H 1.48495 * 109.47483 * 60.00002 * 26 24 22 30 30 H 1.08996 * 109.46497 * 299.99897 * 1 2 3 31 31 H 1.08998 * 109.46946 * 59.99858 * 1 2 3 32 32 H 1.08995 * 109.46771 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47175 * 240.00367 * 2 1 3 34 34 H 1.09000 * 109.47389 * 120.00425 * 2 1 3 35 35 H 1.09001 * 109.83616 * 121.22466 * 6 5 3 36 36 H 1.09006 * 109.82829 * 242.19418 * 6 5 3 37 37 H 1.08999 * 110.85017 * 263.17487 * 7 6 5 38 38 H 1.08998 * 110.84735 * 139.55242 * 7 6 5 39 39 H 0.97001 * 120.00489 * 359.97438 * 12 10 8 40 40 H 1.08996 * 109.47394 * 59.99486 * 15 13 12 41 41 H 1.08997 * 109.47338 * 299.99722 * 15 13 12 42 42 H 1.09001 * 109.47552 * 299.99526 * 16 15 13 43 43 H 1.09007 * 109.46811 * 179.97438 * 16 15 13 44 44 H 1.08993 * 109.47257 * 179.97438 * 17 16 15 45 45 H 1.08996 * 109.46845 * 59.99431 * 17 16 15 46 46 H 1.09007 * 109.46865 * 299.99797 * 18 17 16 47 47 H 1.08996 * 109.47394 * 180.02562 * 18 17 16 48 48 H 0.97000 * 120.00577 * 335.00065 * 21 19 13 49 49 H 0.97001 * 119.99885 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5846 2.0041 0.8156 5 8 1.7568 2.0736 -1.2589 6 6 2.8317 2.9486 -1.6203 7 6 3.9113 2.8397 -0.5222 8 6 3.5841 1.4670 0.1266 9 1 4.0373 0.6491 -0.4336 10 6 4.0112 1.4336 1.5714 11 8 3.1760 1.3937 2.4499 12 7 5.3213 1.4489 1.8874 13 6 5.7365 1.4170 3.2919 14 1 5.0432 0.7982 3.8618 15 6 5.7339 2.8388 3.8570 16 6 6.1669 2.8052 5.3241 17 6 7.5761 2.2183 5.4267 18 6 7.5788 0.7965 4.8615 19 6 7.1458 0.8302 3.3939 20 1 7.8391 1.4489 2.8242 21 7 7.1484 -0.5312 2.8529 22 6 8.3072 -1.0705 2.3616 23 1 9.2193 -0.4925 2.3733 24 6 8.3095 -2.3604 1.8484 25 7 7.1977 -3.0647 1.8337 26 14 9.8905 -3.0964 1.1789 27 1 9.6278 -4.4749 0.6930 28 1 10.3877 -2.2623 0.0553 29 1 10.9125 -3.1368 2.2554 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.2490 2.6451 -2.5804 36 1 2.4687 3.9746 -1.6813 37 1 3.8089 3.6461 0.2039 38 1 4.9099 2.8341 -0.9591 39 1 5.9894 1.4812 1.1848 40 1 4.7299 3.2568 3.7844 41 1 6.4271 3.4575 3.2873 42 1 5.4733 2.1867 5.8937 43 1 6.1654 3.8183 5.7265 44 1 7.8848 2.1949 6.4717 45 1 8.2696 2.8369 4.8571 46 1 6.8851 0.1779 5.4311 47 1 8.5826 0.3782 4.9350 48 1 6.3292 -1.0506 2.8426 49 1 6.3768 -2.6826 2.1817 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085280583.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:41 Heat of formation + Delta-G solvation = -120.907866 kcal Electronic energy + Delta-G solvation = -27425.693584 eV Core-core repulsion = 23771.708178 eV Total energy + Delta-G solvation = -3653.985406 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.68402 -40.29422 -38.96619 -36.17501 -35.27253 -34.54992 -33.44549 -32.93458 -30.65940 -29.51460 -28.96818 -25.61650 -25.21492 -23.87291 -23.07538 -22.62989 -21.85115 -21.35411 -20.72307 -19.32463 -18.75514 -17.80398 -17.16275 -16.91938 -16.27877 -16.09068 -15.85461 -15.69255 -15.42139 -15.05978 -14.96209 -14.88877 -14.47039 -14.39591 -14.11273 -13.95295 -13.76776 -13.61865 -13.20937 -12.80955 -12.74972 -12.65469 -12.46997 -12.26656 -12.16015 -11.98791 -11.95495 -11.84602 -11.81126 -11.68058 -11.59850 -11.39701 -11.12084 -11.00417 -10.77394 -10.49040 -10.03481 -9.10910 -8.34929 -5.29958 1.52280 1.59213 1.68297 1.84224 2.09201 2.71779 2.72758 3.35112 3.43017 3.54321 3.55058 3.62893 3.73682 3.99378 4.06480 4.10460 4.14249 4.16120 4.18888 4.20362 4.34379 4.36682 4.41894 4.47082 4.50606 4.61300 4.73809 4.74763 4.81280 4.87429 4.91527 4.93280 5.01585 5.04132 5.08381 5.16236 5.19108 5.21565 5.23234 5.32558 5.38056 5.46757 5.58671 5.63949 5.98325 6.49426 6.50355 7.08923 7.16421 7.98935 8.13235 9.15610 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.010355 B = 0.004683 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.244413 B = 5977.167472 C = 7611.679648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.123 4.123 3 C 0.108 3.892 4 H 0.069 0.931 5 O -0.391 6.391 6 C 0.048 3.952 7 C -0.134 4.134 8 C -0.145 4.145 9 H 0.112 0.888 10 C 0.526 3.474 11 O -0.578 6.578 12 N -0.702 5.702 13 C 0.147 3.853 14 H 0.051 0.949 15 C -0.113 4.113 16 C -0.111 4.111 17 C -0.109 4.109 18 C -0.128 4.128 19 C 0.178 3.822 20 H 0.057 0.943 21 N -0.743 5.743 22 C -0.320 4.320 23 H 0.070 0.930 24 C -0.103 4.103 25 N -0.977 5.977 26 Si 1.124 2.876 27 H -0.299 1.299 28 H -0.274 1.274 29 H -0.281 1.281 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.111 0.889 39 H 0.408 0.592 40 H 0.058 0.942 41 H 0.080 0.920 42 H 0.052 0.948 43 H 0.089 0.911 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.038 0.962 47 H 0.047 0.953 48 H 0.354 0.646 49 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.059 16.402 -2.727 17.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.161 4.161 3 C 0.051 3.949 4 H 0.087 0.913 5 O -0.311 6.311 6 C -0.028 4.028 7 C -0.172 4.172 8 C -0.166 4.166 9 H 0.130 0.870 10 C 0.313 3.687 11 O -0.458 6.458 12 N -0.350 5.350 13 C 0.042 3.958 14 H 0.069 0.931 15 C -0.152 4.152 16 C -0.149 4.149 17 C -0.147 4.147 18 C -0.169 4.169 19 C 0.070 3.930 20 H 0.075 0.925 21 N -0.384 5.384 22 C -0.451 4.451 23 H 0.088 0.912 24 C -0.295 4.295 25 N -0.625 5.625 26 Si 0.950 3.050 27 H -0.226 1.226 28 H -0.200 1.200 29 H -0.208 1.208 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.130 0.870 39 H 0.243 0.757 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.071 0.929 43 H 0.107 0.893 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.057 0.943 47 H 0.066 0.934 48 H 0.185 0.815 49 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -4.925 15.135 -2.938 16.185 hybrid contribution -0.537 0.536 0.777 1.086 sum -5.462 15.671 -2.161 16.736 Atomic orbital electron populations 1.21644 0.94042 1.02136 1.02007 1.21638 0.98019 0.94464 1.01958 1.22656 0.91518 0.94430 0.86337 0.91301 1.88390 1.43703 1.60986 1.38036 1.23306 0.86440 0.95010 0.98017 1.23107 1.01950 0.93931 0.98209 1.23037 0.98349 1.02105 0.93134 0.86986 1.20446 0.82395 0.74943 0.90896 1.90660 1.52288 1.51764 1.51116 1.45905 1.06918 1.73312 1.08906 1.21173 0.95470 0.97492 0.81703 0.93075 1.21792 1.01693 0.94581 0.97150 1.21483 0.96371 1.01969 0.95052 1.21509 0.97271 0.94572 1.01360 1.22088 1.00372 0.97541 0.96874 1.20605 0.93578 0.85326 0.93528 0.92490 1.42595 1.08431 1.13230 1.74137 1.20307 0.89729 0.99786 1.35313 0.91215 1.27046 1.06129 0.94695 1.01584 1.71005 1.00202 1.39787 1.51532 0.82659 0.71080 0.75053 0.76209 1.22589 1.20019 1.20769 0.93028 0.91872 0.91845 0.91124 0.92382 0.89494 0.89532 0.89861 0.87046 0.75674 0.92289 0.90156 0.92943 0.89272 0.90839 0.90894 0.94313 0.93446 0.81457 0.94921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 9.85 71.98 0.71 -2.69 16 2 C -0.12 -3.42 5.67 30.60 0.17 -3.25 16 3 C 0.11 2.96 2.55 31.26 0.08 3.04 16 4 H 0.07 2.09 7.37 -2.39 -0.02 2.08 16 5 O -0.39 -9.88 10.81 -148.98 -1.61 -11.49 16 6 C 0.05 0.88 7.79 72.45 0.56 1.44 16 7 C -0.13 -2.49 6.49 31.85 0.21 -2.28 16 8 C -0.14 -3.76 2.90 -10.08 -0.03 -3.79 16 9 H 0.11 2.97 8.06 -2.38 -0.02 2.95 16 10 C 0.53 16.85 7.12 87.66 0.62 17.47 16 11 O -0.58 -22.28 15.38 -3.05 -0.05 -22.33 16 12 N -0.70 -21.69 4.91 -442.53 -2.17 -23.86 16 13 C 0.15 4.82 1.98 44.99 0.09 4.91 16 14 H 0.05 2.01 7.58 -2.38 -0.02 1.99 16 15 C -0.11 -2.89 5.49 30.59 0.17 -2.73 16 16 C -0.11 -2.53 5.92 30.59 0.18 -2.35 16 17 C -0.11 -2.65 5.92 30.59 0.18 -2.47 16 18 C -0.13 -4.33 5.50 30.61 0.17 -4.17 16 19 C 0.18 6.53 2.30 45.01 0.10 6.64 16 20 H 0.06 2.05 8.08 -2.39 -0.02 2.03 16 21 N -0.74 -35.37 4.95 -322.88 -1.60 -36.97 16 22 C -0.32 -16.93 9.93 84.03 0.83 -16.10 16 23 H 0.07 3.56 7.83 -2.91 -0.02 3.54 16 24 C -0.10 -5.80 5.50 84.86 0.47 -5.34 16 25 N -0.98 -60.46 13.70 21.65 0.30 -60.16 16 26 Si 1.12 50.53 29.92 68.60 2.05 52.58 16 27 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 28 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 29 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 30 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.06 1.45 7.99 -2.39 -0.02 1.43 16 32 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 37 H 0.08 1.52 8.03 -2.39 -0.02 1.50 16 38 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.41 11.82 8.60 -92.71 -0.80 11.02 16 40 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 44 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 47 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 48 H 0.35 18.63 6.63 -92.71 -0.61 18.01 16 49 H 0.24 15.07 6.77 -92.71 -0.63 14.44 16 Total: -1.00 -68.13 384.97 1.09 -67.03 By element: Atomic # 1 Polarization: 47.20 SS G_CDS: -0.35 Total: 46.85 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: 4.52 Total: -11.66 kcal Atomic # 7 Polarization: -117.52 SS G_CDS: -3.47 Total: -120.99 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -1.66 Total: -33.82 kcal Atomic # 14 Polarization: 50.53 SS G_CDS: 2.05 Total: 52.58 kcal Total: -68.13 1.09 -67.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085280583.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.877 kcal (2) G-P(sol) polarization free energy of solvation -68.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds