Wall clock time and date at job start Tue Mar 31 2020 10:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.46941 * 2 1 4 4 C 1.53001 * 109.47073 * 120.00079 * 2 1 3 5 5 H 1.08996 * 109.86757 * 301.00421 * 4 2 1 6 6 O 1.43741 * 109.87914 * 62.17174 * 4 2 1 7 7 C 1.44372 * 106.97698 * 145.93502 * 6 4 2 8 8 C 1.55339 * 103.50486 * 319.90677 * 7 6 4 9 9 C 1.54096 * 109.87568 * 179.97438 * 4 2 1 10 10 H 1.08998 * 110.49268 * 357.35480 * 9 4 2 11 11 C 1.50696 * 110.48962 * 119.87297 * 9 4 2 12 12 O 1.21289 * 119.99795 * 358.14863 * 11 9 4 13 13 N 1.34773 * 120.00381 * 178.15635 * 11 9 4 14 14 C 1.46503 * 120.00325 * 180.02562 * 13 11 9 15 15 C 1.53001 * 109.47398 * 179.97438 * 14 13 11 16 16 H 1.08994 * 112.84978 * 316.19809 * 15 14 13 17 17 C 1.53780 * 113.61378 * 87.49919 * 15 14 13 18 18 C 1.53782 * 87.07973 * 139.98153 * 17 15 14 19 19 H 1.08998 * 113.69005 * 89.13056 * 18 17 15 20 20 N 1.46504 * 113.61214 * 220.01910 * 18 17 15 21 21 C 1.36943 * 119.99781 * 252.49776 * 20 18 17 22 22 H 1.08002 * 119.99788 * 359.97438 * 21 20 18 23 23 C 1.38811 * 119.99622 * 180.27904 * 21 20 18 24 24 N 1.31614 * 120.00467 * 359.72375 * 23 21 20 25 25 Si 1.86801 * 119.99700 * 179.72266 * 23 21 20 26 26 H 1.48496 * 109.47031 * 59.99836 * 25 23 21 27 27 H 1.48497 * 109.47267 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47169 * 300.00118 * 25 23 21 29 29 C 1.53777 * 87.07986 * 334.56578 * 18 17 15 30 30 H 1.08999 * 109.47491 * 59.99662 * 1 2 3 31 31 H 1.08999 * 109.47456 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.47377 * 299.99964 * 1 2 3 33 33 H 1.08999 * 109.47186 * 240.00165 * 2 1 3 34 34 H 1.09006 * 109.47073 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47138 * 299.99925 * 3 2 1 36 36 H 1.09000 * 109.47533 * 60.00271 * 3 2 1 37 37 H 1.08998 * 110.61808 * 78.44135 * 7 6 4 38 38 H 1.08998 * 110.62088 * 201.27511 * 7 6 4 39 39 H 1.09008 * 110.95863 * 278.92270 * 8 7 6 40 40 H 1.08996 * 111.01132 * 155.20969 * 8 7 6 41 41 H 0.97003 * 120.00423 * 359.97438 * 13 11 9 42 42 H 1.08995 * 109.47501 * 59.99426 * 14 13 11 43 43 H 1.09012 * 109.46714 * 299.99845 * 14 13 11 44 44 H 1.09007 * 113.61589 * 25.43254 * 17 15 14 45 45 H 1.08995 * 113.61560 * 254.53038 * 17 15 14 46 46 H 0.97000 * 120.00410 * 72.50101 * 20 18 17 47 47 H 0.96995 * 120.00147 * 180.02562 * 24 23 21 48 48 H 1.09003 * 113.60950 * 139.98212 * 29 18 17 49 49 H 1.09000 * 113.61799 * 270.79981 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6656 -0.2230 2.1434 6 8 1.6079 -2.0921 1.2328 7 6 2.6558 -2.8718 1.8478 8 6 3.9579 -2.2278 1.2974 9 6 3.5809 -0.7273 1.2584 10 1 3.9696 -0.2598 0.3537 11 6 4.1039 -0.0206 2.4823 12 8 3.3300 0.4814 3.2698 13 7 5.4315 0.0537 2.7018 14 6 5.9400 0.7401 3.8920 15 6 7.4688 0.6801 3.9014 16 1 7.8554 -0.3039 3.6362 17 6 8.1353 1.8334 3.1329 18 6 9.1773 1.8797 4.2629 19 1 10.0327 1.2249 4.0970 20 7 9.5672 3.2389 4.6462 21 6 10.8036 3.7186 4.3044 22 1 11.4912 3.0947 3.7527 23 6 11.1752 5.0043 4.6726 24 7 10.3374 5.7644 5.3454 25 14 12.8645 5.6559 4.2132 26 1 13.0128 5.6487 2.7356 27 1 13.0139 7.0442 4.7184 28 1 13.9098 4.7927 4.8196 29 6 8.1005 1.2677 5.1744 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 2.6129 -2.7838 2.9334 38 1 2.5847 -3.9166 1.5456 39 1 4.1833 -2.5981 0.2972 40 1 4.7955 -2.4012 1.9728 41 1 6.0505 -0.3481 2.0722 42 1 5.5521 0.2525 4.7863 43 1 5.6169 1.7812 3.8768 44 1 7.5188 2.7302 3.0703 45 1 8.5488 1.5348 2.1697 46 1 8.9498 3.7991 5.1420 47 1 10.5970 6.6630 5.6023 48 1 8.4860 0.5124 5.8592 49 1 7.4755 2.0098 5.6711 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086105029.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:34 Heat of formation + Delta-G solvation = -70.158149 kcal Electronic energy + Delta-G solvation = -26005.110263 eV Core-core repulsion = 22353.325530 eV Total energy + Delta-G solvation = -3651.784733 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.92604 -39.10406 -38.20942 -35.41181 -34.75714 -33.41213 -32.58785 -30.27716 -28.84402 -27.45845 -27.23355 -25.13355 -24.20627 -23.42279 -22.74961 -21.11311 -20.63954 -20.09275 -19.08322 -17.58763 -17.05922 -16.72086 -16.33520 -15.85388 -15.58028 -15.14179 -14.74936 -14.57886 -14.20299 -13.97920 -13.79028 -13.57208 -13.35060 -13.31721 -12.94521 -12.71053 -12.35611 -12.09217 -11.93736 -11.85407 -11.70091 -11.54029 -11.42473 -11.26561 -11.24203 -11.00238 -10.91938 -10.84716 -10.56852 -10.30525 -10.19461 -9.96846 -9.86591 -9.74409 -9.50574 -9.10714 -8.89237 -6.99343 -5.80644 -3.09790 2.45057 2.99302 3.41141 3.45639 3.46872 3.50267 4.10197 4.27458 4.44416 4.55838 4.58471 4.73895 4.80216 4.86995 4.91995 4.97185 4.99675 5.11976 5.18726 5.33754 5.34123 5.42797 5.43441 5.45288 5.46146 5.54291 5.58103 5.66526 5.77343 5.78011 5.80329 5.88131 5.89276 6.05821 6.07365 6.11641 6.20760 6.27273 6.31719 6.39735 6.55027 6.60540 6.78464 7.07255 7.36127 7.65824 8.06621 8.37865 9.48792 10.06884 10.40990 11.41643 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.024722 B = 0.002292 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.322541 B =12210.988185 C =12738.451206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 C -0.150 4.150 4 C 0.090 3.910 5 H 0.095 0.905 6 O -0.370 6.370 7 C 0.047 3.953 8 C -0.146 4.146 9 C -0.146 4.146 10 H 0.114 0.886 11 C 0.518 3.482 12 O -0.536 6.536 13 N -0.722 5.722 14 C 0.131 3.869 15 C -0.127 4.127 16 H 0.088 0.912 17 C -0.161 4.161 18 C 0.166 3.834 19 H 0.075 0.925 20 N -0.713 5.713 21 C -0.246 4.246 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.932 5.932 25 Si 0.908 3.092 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 C -0.142 4.142 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.400 0.600 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.053 0.947 46 H 0.385 0.615 47 H 0.257 0.743 48 H 0.061 0.939 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.110 -17.797 -10.712 26.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 C -0.207 4.207 4 C 0.032 3.968 5 H 0.113 0.887 6 O -0.289 6.289 7 C -0.030 4.030 8 C -0.184 4.184 9 C -0.168 4.168 10 H 0.132 0.868 11 C 0.303 3.697 12 O -0.413 6.413 13 N -0.373 5.373 14 C 0.008 3.992 15 C -0.146 4.146 16 H 0.106 0.894 17 C -0.202 4.202 18 C 0.054 3.946 19 H 0.093 0.907 20 N -0.350 5.350 21 C -0.377 4.377 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.580 5.580 25 Si 0.738 3.262 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.212 1.212 29 C -0.182 4.182 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.113 0.887 39 H 0.107 0.893 40 H 0.104 0.896 41 H 0.234 0.766 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.096 0.904 45 H 0.072 0.928 46 H 0.219 0.781 47 H 0.066 0.934 48 H 0.080 0.920 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.655 -17.406 -10.238 26.175 hybrid contribution 1.341 0.500 -0.334 1.470 sum -15.314 -16.905 -10.572 25.141 Atomic orbital electron populations 1.21752 0.94384 1.02260 1.01628 1.21237 0.96930 0.95904 0.96995 1.21873 1.01035 0.95269 1.02523 1.22874 0.90278 0.83670 0.99930 0.88703 1.88861 1.41317 1.17572 1.81112 1.23594 0.85504 0.96269 0.97624 1.23221 0.99337 0.92581 1.03269 1.22771 0.98298 0.97315 0.98407 0.86818 1.20276 0.82542 0.79911 0.86932 1.90699 1.56227 1.47148 1.47236 1.46043 1.06637 1.57827 1.26794 1.21468 0.93592 0.97417 0.86695 1.22638 0.92287 0.99321 1.00398 0.89412 1.23953 1.00315 0.96640 0.99282 1.21514 0.92898 0.88104 0.92101 0.90682 1.42410 1.16589 1.10240 1.65810 1.19254 0.92044 0.96976 1.29416 0.91160 1.24774 0.98319 0.96982 1.00807 1.69645 1.35437 1.09425 1.43492 0.86264 0.83966 0.77945 0.77977 1.21241 1.21660 1.21221 1.23450 0.99169 0.99847 0.95763 0.92745 0.91992 0.92617 0.90741 0.92661 0.92058 0.91975 0.92045 0.88684 0.89316 0.89638 0.76576 0.91750 0.91141 0.90353 0.92801 0.78058 0.93359 0.92006 0.90097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.07 37.15 0.34 -0.88 16 2 C -0.09 -0.81 2.58 -90.62 -0.23 -1.04 16 3 C -0.15 -1.30 8.93 37.16 0.33 -0.97 16 4 C 0.09 0.92 2.59 -26.16 -0.07 0.85 16 5 H 0.10 1.21 6.44 -51.93 -0.33 0.87 16 6 O -0.37 -3.88 10.63 -35.23 -0.37 -4.26 16 7 C 0.05 0.38 7.73 38.40 0.30 0.67 16 8 C -0.15 -0.99 6.71 -24.56 -0.16 -1.15 16 9 C -0.15 -1.28 2.44 -90.27 -0.22 -1.50 16 10 H 0.11 0.84 6.48 -51.93 -0.34 0.50 16 11 C 0.52 6.04 7.08 -10.99 -0.08 5.96 16 12 O -0.54 -8.38 15.26 5.55 0.08 -8.30 16 13 N -0.72 -7.49 5.32 -60.29 -0.32 -7.81 16 14 C 0.13 1.64 5.51 -4.04 -0.02 1.62 16 15 C -0.13 -1.61 3.75 -89.81 -0.34 -1.95 16 16 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 17 C -0.16 -2.56 7.43 -25.92 -0.19 -2.75 16 18 C 0.17 3.13 4.48 -67.12 -0.30 2.83 16 19 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 20 N -0.71 -17.57 5.40 -52.64 -0.28 -17.86 16 21 C -0.25 -6.73 9.97 -15.06 -0.15 -6.88 16 22 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -28.03 13.06 55.49 0.72 -27.31 16 25 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 29 C -0.14 -2.20 7.39 -25.92 -0.19 -2.39 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.55 7.76 -51.93 -0.40 0.15 16 32 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.48 6.53 -51.93 -0.34 0.14 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.47 8.14 -51.92 -0.42 0.05 16 40 H 0.09 0.51 7.68 -51.93 -0.40 0.11 16 41 H 0.40 3.15 8.47 -40.82 -0.35 2.80 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.07 1.02 7.85 -51.92 -0.41 0.62 16 44 H 0.08 1.39 7.90 -51.93 -0.41 0.98 16 45 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 46 H 0.39 10.15 7.92 -40.82 -0.32 9.83 16 47 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 48 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.08 1.33 8.08 -51.93 -0.42 0.91 16 LS Contribution 388.77 15.07 5.86 5.86 Total: -1.00 -32.04 388.77 -9.18 -41.22 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -8.76 Total: 9.37 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -1.09 Total: -8.05 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: 0.12 Total: -52.97 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -0.29 Total: -12.56 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.04 -9.18 -41.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086105029.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.936 kcal (2) G-P(sol) polarization free energy of solvation -32.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds