Wall clock time and date at job start Tue Mar 31 2020 10:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.46941 * 2 1 4 4 C 1.53001 * 109.47073 * 120.00079 * 2 1 3 5 5 H 1.08996 * 109.86757 * 301.00421 * 4 2 1 6 6 O 1.43741 * 109.87914 * 62.17174 * 4 2 1 7 7 C 1.44372 * 106.97698 * 145.93502 * 6 4 2 8 8 C 1.55339 * 103.50486 * 319.90677 * 7 6 4 9 9 C 1.54096 * 109.87568 * 179.97438 * 4 2 1 10 10 H 1.08998 * 110.49268 * 357.35480 * 9 4 2 11 11 C 1.50696 * 110.48962 * 119.87297 * 9 4 2 12 12 O 1.21289 * 119.99795 * 358.14863 * 11 9 4 13 13 N 1.34773 * 120.00381 * 178.15635 * 11 9 4 14 14 C 1.46503 * 120.00325 * 180.02562 * 13 11 9 15 15 C 1.53001 * 109.47398 * 179.97438 * 14 13 11 16 16 H 1.08994 * 112.84978 * 316.19809 * 15 14 13 17 17 C 1.53780 * 113.61378 * 87.49919 * 15 14 13 18 18 C 1.53782 * 87.07973 * 139.98153 * 17 15 14 19 19 H 1.08998 * 113.69005 * 89.13056 * 18 17 15 20 20 N 1.46504 * 113.61214 * 220.01910 * 18 17 15 21 21 C 1.36943 * 119.99781 * 252.49776 * 20 18 17 22 22 H 1.08002 * 119.99788 * 359.97438 * 21 20 18 23 23 C 1.38811 * 119.99622 * 180.27904 * 21 20 18 24 24 N 1.31614 * 120.00467 * 359.72375 * 23 21 20 25 25 Si 1.86801 * 119.99700 * 179.72266 * 23 21 20 26 26 H 1.48496 * 109.47031 * 59.99836 * 25 23 21 27 27 H 1.48497 * 109.47267 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47169 * 300.00118 * 25 23 21 29 29 C 1.53777 * 87.07986 * 334.56578 * 18 17 15 30 30 H 1.08999 * 109.47491 * 59.99662 * 1 2 3 31 31 H 1.08999 * 109.47456 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.47377 * 299.99964 * 1 2 3 33 33 H 1.08999 * 109.47186 * 240.00165 * 2 1 3 34 34 H 1.09006 * 109.47073 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47138 * 299.99925 * 3 2 1 36 36 H 1.09000 * 109.47533 * 60.00271 * 3 2 1 37 37 H 1.08998 * 110.61808 * 78.44135 * 7 6 4 38 38 H 1.08998 * 110.62088 * 201.27511 * 7 6 4 39 39 H 1.09008 * 110.95863 * 278.92270 * 8 7 6 40 40 H 1.08996 * 111.01132 * 155.20969 * 8 7 6 41 41 H 0.97003 * 120.00423 * 359.97438 * 13 11 9 42 42 H 1.08995 * 109.47501 * 59.99426 * 14 13 11 43 43 H 1.09012 * 109.46714 * 299.99845 * 14 13 11 44 44 H 1.09007 * 113.61589 * 25.43254 * 17 15 14 45 45 H 1.08995 * 113.61560 * 254.53038 * 17 15 14 46 46 H 0.97000 * 120.00410 * 72.50101 * 20 18 17 47 47 H 0.96995 * 120.00147 * 180.02562 * 24 23 21 48 48 H 1.09003 * 113.60950 * 139.98212 * 29 18 17 49 49 H 1.09000 * 113.61799 * 270.79981 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6656 -0.2230 2.1434 6 8 1.6079 -2.0921 1.2328 7 6 2.6558 -2.8718 1.8478 8 6 3.9579 -2.2278 1.2974 9 6 3.5809 -0.7273 1.2584 10 1 3.9696 -0.2598 0.3537 11 6 4.1039 -0.0206 2.4823 12 8 3.3300 0.4814 3.2698 13 7 5.4315 0.0537 2.7018 14 6 5.9400 0.7401 3.8920 15 6 7.4688 0.6801 3.9014 16 1 7.8554 -0.3039 3.6362 17 6 8.1353 1.8334 3.1329 18 6 9.1773 1.8797 4.2629 19 1 10.0327 1.2249 4.0970 20 7 9.5672 3.2389 4.6462 21 6 10.8036 3.7186 4.3044 22 1 11.4912 3.0947 3.7527 23 6 11.1752 5.0043 4.6726 24 7 10.3374 5.7644 5.3454 25 14 12.8645 5.6559 4.2132 26 1 13.0128 5.6487 2.7356 27 1 13.0139 7.0442 4.7184 28 1 13.9098 4.7927 4.8196 29 6 8.1005 1.2677 5.1744 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 2.6129 -2.7838 2.9334 38 1 2.5847 -3.9166 1.5456 39 1 4.1833 -2.5981 0.2972 40 1 4.7955 -2.4012 1.9728 41 1 6.0505 -0.3481 2.0722 42 1 5.5521 0.2525 4.7863 43 1 5.6169 1.7812 3.8768 44 1 7.5188 2.7302 3.0703 45 1 8.5488 1.5348 2.1697 46 1 8.9498 3.7991 5.1420 47 1 10.5970 6.6630 5.6023 48 1 8.4860 0.5124 5.8592 49 1 7.4755 2.0098 5.6711 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086105029.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:33 Heat of formation + Delta-G solvation = -91.618273 kcal Electronic energy + Delta-G solvation = -26006.040844 eV Core-core repulsion = 22353.325530 eV Total energy + Delta-G solvation = -3652.715314 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.75134 -40.22687 -39.28995 -36.18884 -35.96685 -35.06394 -33.40734 -32.11109 -29.57201 -28.61185 -27.97825 -26.45717 -25.91930 -24.44541 -23.41917 -22.42555 -21.50541 -20.93469 -20.39744 -19.05922 -18.40327 -17.45159 -17.26241 -16.87598 -16.57140 -16.37772 -16.02891 -15.80488 -15.39756 -15.00664 -14.90870 -14.67417 -14.51124 -14.22055 -14.01220 -13.50426 -13.37198 -13.23952 -13.07585 -13.00796 -12.91517 -12.72413 -12.60057 -12.37846 -12.25703 -12.15189 -12.07967 -11.92576 -11.70681 -11.61166 -11.56828 -11.54211 -11.11940 -10.87062 -10.77815 -10.54213 -10.10568 -8.97680 -7.94376 -5.22825 1.47267 1.50220 1.54703 1.56346 2.10104 2.56946 2.83121 3.37275 3.44102 3.57798 3.65012 3.74830 3.76377 3.93005 4.00335 4.04597 4.11664 4.24434 4.25826 4.35324 4.35935 4.42748 4.46800 4.55829 4.67081 4.75323 4.76378 4.80803 4.83704 4.87622 4.96690 4.97841 4.98809 5.02696 5.05435 5.07819 5.18698 5.22699 5.35234 5.38138 5.41140 5.44545 5.52976 5.73540 5.90517 6.27812 6.52110 7.20220 7.33192 8.11891 8.33256 9.29030 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.024722 B = 0.002292 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.322541 B =12210.988185 C =12738.451206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.089 4.089 3 C -0.147 4.147 4 C 0.089 3.911 5 H 0.060 0.940 6 O -0.385 6.385 7 C 0.037 3.963 8 C -0.136 4.136 9 C -0.140 4.140 10 H 0.135 0.865 11 C 0.516 3.484 12 O -0.583 6.583 13 N -0.709 5.709 14 C 0.138 3.862 15 C -0.093 4.093 16 H 0.125 0.875 17 C -0.153 4.153 18 C 0.143 3.857 19 H 0.082 0.918 20 N -0.731 5.731 21 C -0.243 4.243 22 H 0.080 0.920 23 C -0.081 4.081 24 N -0.973 5.973 25 Si 0.973 3.027 26 H -0.277 1.277 27 H -0.299 1.299 28 H -0.276 1.276 29 C -0.138 4.138 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.042 0.958 33 H 0.090 0.910 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.040 0.960 37 H 0.046 0.954 38 H 0.118 0.882 39 H 0.114 0.886 40 H 0.097 0.903 41 H 0.417 0.583 42 H 0.064 0.936 43 H 0.044 0.956 44 H 0.053 0.947 45 H 0.069 0.931 46 H 0.371 0.629 47 H 0.250 0.750 48 H 0.078 0.922 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.094 -20.382 -12.921 28.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.107 4.107 3 C -0.205 4.205 4 C 0.031 3.969 5 H 0.078 0.922 6 O -0.304 6.304 7 C -0.039 4.039 8 C -0.174 4.174 9 C -0.161 4.161 10 H 0.153 0.847 11 C 0.303 3.697 12 O -0.463 6.463 13 N -0.361 5.361 14 C 0.014 3.986 15 C -0.112 4.112 16 H 0.142 0.858 17 C -0.193 4.193 18 C 0.033 3.967 19 H 0.100 0.900 20 N -0.368 5.368 21 C -0.374 4.374 22 H 0.098 0.902 23 C -0.272 4.272 24 N -0.624 5.624 25 Si 0.802 3.198 26 H -0.203 1.203 27 H -0.225 1.225 28 H -0.202 1.202 29 C -0.178 4.178 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.109 0.891 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.136 0.864 39 H 0.133 0.867 40 H 0.116 0.884 41 H 0.254 0.746 42 H 0.082 0.918 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.088 0.912 46 H 0.203 0.797 47 H 0.059 0.941 48 H 0.097 0.903 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.620 -20.075 -12.494 28.339 hybrid contribution 0.958 1.218 0.373 1.594 sum -14.663 -18.857 -12.120 26.786 Atomic orbital electron populations 1.21741 0.94474 1.01946 1.01751 1.21237 0.96921 0.95744 0.96844 1.21857 1.01123 0.95295 1.02177 1.22771 0.91334 0.83636 0.99159 0.92193 1.88848 1.42669 1.17716 1.81208 1.23800 0.85815 0.97375 0.96919 1.23267 0.98788 0.90333 1.04962 1.22771 0.97150 0.98786 0.97424 0.84692 1.20817 0.82394 0.79240 0.87258 1.90693 1.57418 1.49108 1.49045 1.45872 1.06665 1.57174 1.26359 1.21221 0.93411 0.96270 0.87702 1.22465 0.91953 0.99625 0.97182 0.85750 1.23718 0.99098 0.97208 0.99315 1.21971 0.94372 0.85724 0.94610 0.90012 1.42644 1.15689 1.12352 1.66124 1.19705 0.92962 0.96964 1.27813 0.90225 1.25608 1.02057 0.97676 1.01897 1.69816 1.37392 1.09470 1.45700 0.85209 0.79869 0.76758 0.77930 1.20303 1.22516 1.20220 1.23336 0.97883 0.99786 0.96784 0.91281 0.92485 0.93844 0.89139 0.92429 0.90632 0.94065 0.93517 0.86401 0.86742 0.88408 0.74577 0.91812 0.93749 0.92790 0.91182 0.79730 0.94121 0.90309 0.91723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.07 71.98 0.65 -1.69 16 2 C -0.09 -1.46 2.58 -10.80 -0.03 -1.48 16 3 C -0.15 -2.45 8.93 71.98 0.64 -1.80 16 4 C 0.09 1.77 2.59 30.97 0.08 1.85 16 5 H 0.06 1.62 6.44 -2.39 -0.02 1.61 16 6 O -0.38 -7.71 10.63 -148.98 -1.58 -9.29 16 7 C 0.04 0.53 7.73 72.79 0.56 1.09 16 8 C -0.14 -1.37 6.71 32.00 0.21 -1.16 16 9 C -0.14 -2.17 2.44 -10.57 -0.03 -2.19 16 10 H 0.14 1.54 6.48 -2.39 -0.02 1.53 16 11 C 0.52 11.48 7.08 87.66 0.62 12.10 16 12 O -0.58 -18.68 15.26 -3.06 -0.05 -18.72 16 13 N -0.71 -13.08 5.32 -463.05 -2.46 -15.55 16 14 C 0.14 3.25 5.51 86.38 0.48 3.73 16 15 C -0.09 -2.11 3.75 -10.27 -0.04 -2.15 16 16 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 17 C -0.15 -4.62 7.43 31.12 0.23 -4.38 16 18 C 0.14 5.22 4.48 45.52 0.20 5.42 16 19 H 0.08 2.88 8.10 -2.39 -0.02 2.86 16 20 N -0.73 -36.41 5.40 -320.44 -1.73 -38.14 16 21 C -0.24 -13.29 9.97 84.03 0.84 -12.45 16 22 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 23 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 24 N -0.97 -60.08 13.06 21.65 0.28 -59.80 16 25 Si 0.97 45.81 29.55 68.60 2.03 47.84 16 26 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 27 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 28 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 29 C -0.14 -4.09 7.39 31.12 0.23 -3.86 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.90 16 31 H 0.06 0.99 7.76 -2.39 -0.02 0.97 16 32 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.06 0.91 6.53 -2.38 -0.02 0.89 16 35 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.11 0.65 8.14 -2.38 -0.02 0.63 16 40 H 0.10 0.78 7.68 -2.39 -0.02 0.76 16 41 H 0.42 4.91 8.47 -92.71 -0.79 4.13 16 42 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.04 1.30 7.85 -2.38 -0.02 1.29 16 44 H 0.05 1.92 7.90 -2.38 -0.02 1.90 16 45 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.37 20.22 7.92 -92.71 -0.73 19.49 16 47 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 48 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 49 H 0.06 2.14 8.08 -2.39 -0.02 2.12 16 Total: -1.00 -72.33 388.77 1.03 -71.31 By element: Atomic # 1 Polarization: 34.06 SS G_CDS: -0.59 Total: 33.48 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: 5.13 Total: -11.13 kcal Atomic # 7 Polarization: -109.57 SS G_CDS: -3.91 Total: -113.48 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -1.63 Total: -28.02 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -72.33 1.03 -71.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086105029.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.313 kcal (2) G-P(sol) polarization free energy of solvation -72.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds