Wall clock time and date at job start Tue Mar 31 2020 10:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47306 * 2 1 4 4 C 1.53004 * 109.47001 * 119.99834 * 2 1 3 5 5 H 1.09004 * 109.86687 * 301.00603 * 4 2 1 6 6 O 1.43745 * 110.00102 * 62.09159 * 4 2 1 7 7 C 1.44381 * 106.97019 * 146.01076 * 6 4 2 8 8 C 1.54987 * 103.49262 * 319.93655 * 7 6 4 9 9 C 1.54097 * 109.87996 * 180.02562 * 4 2 1 10 10 H 1.08997 * 110.48714 * 357.20083 * 9 4 2 11 11 C 1.50701 * 110.48932 * 119.71953 * 9 4 2 12 12 O 1.21280 * 119.99781 * 359.97438 * 11 9 4 13 13 N 1.34771 * 119.99622 * 180.02562 * 11 9 4 14 14 C 1.46505 * 119.99622 * 179.97438 * 13 11 9 15 15 C 1.52997 * 109.47212 * 179.97438 * 14 13 11 16 16 H 1.09001 * 112.85054 * 45.33091 * 15 14 13 17 17 C 1.53782 * 113.61871 * 176.53036 * 15 14 13 18 18 C 1.53777 * 87.08471 * 139.98088 * 17 15 14 19 19 H 1.08993 * 113.61629 * 220.02081 * 18 17 15 20 20 N 1.46498 * 113.61442 * 89.19876 * 18 17 15 21 21 C 1.36933 * 120.00006 * 154.99938 * 20 18 17 22 22 H 1.08003 * 119.99845 * 0.02562 * 21 20 18 23 23 C 1.38814 * 120.00347 * 180.02562 * 21 20 18 24 24 N 1.31615 * 120.00138 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99747 * 359.97438 * 23 21 20 26 26 H 1.48507 * 109.46834 * 90.00217 * 25 23 21 27 27 H 1.48497 * 109.47358 * 209.99955 * 25 23 21 28 28 H 1.48500 * 109.47227 * 330.00650 * 25 23 21 29 29 C 1.53785 * 113.61570 * 274.13670 * 15 14 13 30 30 H 1.08997 * 109.47205 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47365 * 300.00651 * 1 2 3 32 32 H 1.09005 * 109.47084 * 60.00254 * 1 2 3 33 33 H 1.08997 * 109.47365 * 239.99349 * 2 1 3 34 34 H 1.09003 * 109.47273 * 180.02562 * 3 2 1 35 35 H 1.09005 * 109.46842 * 299.99895 * 3 2 1 36 36 H 1.08997 * 109.47440 * 59.99394 * 3 2 1 37 37 H 1.09006 * 110.61715 * 78.44389 * 7 6 4 38 38 H 1.09005 * 110.61531 * 201.43596 * 7 6 4 39 39 H 1.08999 * 110.91017 * 278.82933 * 8 7 6 40 40 H 1.09002 * 110.90825 * 155.22006 * 8 7 6 41 41 H 0.96996 * 120.00772 * 359.97438 * 13 11 9 42 42 H 1.09002 * 109.47068 * 299.99729 * 14 13 11 43 43 H 1.09001 * 109.47372 * 59.99816 * 14 13 11 44 44 H 1.09011 * 113.61074 * 254.53256 * 17 15 14 45 45 H 1.09000 * 113.61044 * 25.34248 * 17 15 14 46 46 H 0.96999 * 120.00187 * 335.00017 * 20 18 17 47 47 H 0.96999 * 119.99929 * 180.02562 * 24 23 21 48 48 H 1.09000 * 113.61195 * 334.56762 * 29 15 14 49 49 H 1.09001 * 113.61520 * 105.46896 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6656 -0.2229 2.1435 6 8 1.6078 -2.0921 1.2365 7 6 2.6557 -2.8702 1.8537 8 6 3.9547 -2.2284 1.3033 9 6 3.5809 -0.7262 1.2592 10 1 3.9697 -0.2606 0.3536 11 6 4.1029 -0.0162 2.4817 12 8 3.3276 0.4584 3.2846 13 7 5.4312 0.0922 2.6822 14 6 5.9386 0.7829 3.8704 15 6 7.4684 0.7642 3.8568 16 1 7.8862 1.0196 2.8830 17 6 8.1044 1.5396 5.0226 18 6 9.1377 0.4042 5.1109 19 1 9.3955 0.1269 6.1330 20 7 10.3148 0.6147 4.2645 21 6 11.5044 0.0171 4.5852 22 1 11.5747 -0.6098 5.4618 23 6 12.6199 0.2170 3.7835 24 7 13.7631 -0.3578 4.0915 25 14 12.4980 1.3008 2.2669 26 1 12.8184 2.7036 2.6340 27 1 13.4601 0.8257 1.2404 28 1 11.1187 1.2347 1.7209 29 6 8.0744 -0.5080 4.4726 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 2.6127 -2.7793 2.9392 38 1 2.5862 -3.9153 1.5520 39 1 4.1806 -2.6027 0.3048 40 1 4.7911 -2.4011 1.9805 41 1 6.0512 -0.2870 2.0399 42 1 5.5875 1.8148 3.8685 43 1 5.5774 0.2779 4.7663 44 1 8.5326 2.4978 4.7276 45 1 7.4610 1.6155 5.8991 46 1 10.2515 1.1775 3.4770 47 1 14.5427 -0.2178 3.5315 48 1 7.4233 -0.9943 5.1990 49 1 8.4784 -1.2007 3.7343 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086384480.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:52 Heat of formation + Delta-G solvation = -65.277638 kcal Electronic energy + Delta-G solvation = -26259.054544 eV Core-core repulsion = 22607.481445 eV Total energy + Delta-G solvation = -3651.573098 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.94834 -39.22715 -38.33402 -35.44677 -34.83587 -33.39256 -32.58222 -30.70147 -28.88472 -27.66302 -27.32279 -25.25373 -24.12248 -23.22978 -22.70932 -21.77124 -20.65518 -20.12435 -18.66621 -17.79105 -17.49030 -16.74436 -16.36356 -15.84413 -15.56121 -15.19492 -14.86482 -14.48161 -14.22381 -14.07883 -13.85761 -13.60120 -13.44918 -13.36757 -12.94711 -12.70967 -12.57465 -12.40278 -12.13706 -12.01992 -11.71849 -11.68472 -11.49474 -11.42960 -11.27079 -11.03627 -10.96832 -10.94457 -10.57545 -10.35785 -10.22504 -9.98859 -9.77893 -9.70297 -9.58027 -9.16546 -8.97202 -7.36745 -5.85408 -3.21927 2.40733 2.96357 3.28770 3.32315 3.38353 3.50321 4.11601 4.25843 4.43628 4.50231 4.60365 4.69732 4.77505 4.84784 4.86130 4.89600 4.97159 5.03053 5.10131 5.33115 5.34027 5.36003 5.37375 5.38693 5.43217 5.45312 5.53258 5.57338 5.61582 5.69001 5.74390 5.78338 5.82268 5.84650 6.02798 6.05436 6.07829 6.16440 6.25705 6.41957 6.54508 6.60537 6.66578 6.82238 7.32617 7.92210 8.02043 8.34197 9.11725 9.83879 10.02941 11.32649 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.021309 B = 0.002588 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.700856 B =10814.919245 C =10916.968607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.093 4.093 3 C -0.149 4.149 4 C 0.090 3.910 5 H 0.095 0.905 6 O -0.370 6.370 7 C 0.047 3.953 8 C -0.147 4.147 9 C -0.146 4.146 10 H 0.113 0.887 11 C 0.519 3.481 12 O -0.539 6.539 13 N -0.722 5.722 14 C 0.130 3.870 15 C -0.124 4.124 16 H 0.089 0.911 17 C -0.148 4.148 18 C 0.173 3.827 19 H 0.072 0.928 20 N -0.730 5.730 21 C -0.248 4.248 22 H 0.092 0.908 23 C 0.006 3.994 24 N -0.931 5.931 25 Si 0.885 3.115 26 H -0.283 1.283 27 H -0.290 1.290 28 H -0.278 1.278 29 C -0.167 4.167 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.402 0.598 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.082 0.918 46 H 0.362 0.638 47 H 0.260 0.740 48 H 0.072 0.928 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.607 -0.584 -8.122 25.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 C -0.206 4.206 4 C 0.032 3.968 5 H 0.112 0.888 6 O -0.289 6.289 7 C -0.029 4.029 8 C -0.185 4.185 9 C -0.168 4.168 10 H 0.131 0.869 11 C 0.305 3.695 12 O -0.416 6.416 13 N -0.373 5.373 14 C 0.007 3.993 15 C -0.143 4.143 16 H 0.107 0.893 17 C -0.188 4.188 18 C 0.061 3.939 19 H 0.090 0.910 20 N -0.370 5.370 21 C -0.377 4.377 22 H 0.110 0.890 23 C -0.190 4.190 24 N -0.578 5.578 25 Si 0.715 3.285 26 H -0.210 1.210 27 H -0.216 1.216 28 H -0.205 1.205 29 C -0.207 4.207 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.114 0.886 39 H 0.107 0.893 40 H 0.105 0.895 41 H 0.237 0.763 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.100 0.900 46 H 0.195 0.805 47 H 0.071 0.929 48 H 0.090 0.910 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -25.119 -0.435 -7.497 26.217 hybrid contribution 0.694 0.636 -1.457 1.734 sum -24.425 0.201 -8.953 26.015 Atomic orbital electron populations 1.21750 0.94364 1.02333 1.01556 1.21237 0.96939 0.95823 0.97112 1.21867 1.00957 0.95382 1.02417 1.22860 0.90275 0.83825 0.99790 0.88785 1.88860 1.41371 1.17547 1.81086 1.23546 0.85430 0.96351 0.97613 1.23186 0.99481 0.92363 1.03445 1.22787 0.98287 0.97439 0.98285 0.86923 1.20281 0.82492 0.79659 0.87080 1.90682 1.56178 1.48367 1.46365 1.46054 1.06628 1.58288 1.26339 1.21487 0.93756 0.96789 0.87223 1.22757 0.91980 0.99873 0.99652 0.89253 1.23459 0.98884 0.99202 0.97265 1.21027 0.85579 0.92523 0.94747 0.91038 1.42512 1.07103 1.58411 1.28943 1.19109 0.85467 1.23740 1.09433 0.89017 1.24688 0.95534 1.00034 0.98775 1.69695 1.00542 1.47441 1.40153 0.86558 0.76974 0.81012 0.83965 1.20992 1.21648 1.20458 1.23884 0.99852 0.96356 1.00656 0.91927 0.92650 0.92775 0.90692 0.92729 0.92085 0.92068 0.91982 0.88587 0.89256 0.89474 0.76348 0.91748 0.91366 0.91410 0.89977 0.80537 0.92943 0.90968 0.91344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.07 37.16 0.34 -0.83 16 2 C -0.09 -0.79 2.58 -90.62 -0.23 -1.02 16 3 C -0.15 -1.19 8.93 37.16 0.33 -0.86 16 4 C 0.09 0.91 2.59 -26.16 -0.07 0.85 16 5 H 0.09 1.17 6.43 -51.93 -0.33 0.84 16 6 O -0.37 -3.97 10.64 -35.23 -0.37 -4.34 16 7 C 0.05 0.41 7.72 38.21 0.29 0.70 16 8 C -0.15 -1.12 6.70 -24.70 -0.17 -1.29 16 9 C -0.15 -1.31 2.45 -90.21 -0.22 -1.53 16 10 H 0.11 0.84 6.48 -51.93 -0.34 0.50 16 11 C 0.52 5.96 7.05 -10.99 -0.08 5.89 16 12 O -0.54 -8.08 15.25 5.56 0.08 -7.99 16 13 N -0.72 -7.61 5.41 -60.29 -0.33 -7.93 16 14 C 0.13 1.54 5.50 -4.04 -0.02 1.52 16 15 C -0.12 -1.62 3.63 -89.81 -0.33 -1.95 16 16 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 17 C -0.15 -2.11 7.39 -25.92 -0.19 -2.31 16 18 C 0.17 3.09 4.57 -67.03 -0.31 2.79 16 19 H 0.07 1.33 8.10 -51.93 -0.42 0.91 16 20 N -0.73 -16.37 5.11 -52.55 -0.27 -16.64 16 21 C -0.25 -6.76 10.45 -15.06 -0.16 -6.91 16 22 H 0.09 2.69 8.06 -52.48 -0.42 2.26 16 23 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 24 N -0.93 -28.60 13.97 55.49 0.78 -27.82 16 25 Si 0.88 21.37 27.74 -169.99 -4.71 16.65 16 26 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.28 -6.24 6.52 56.52 0.37 -5.87 16 29 C -0.17 -2.49 7.44 -25.82 -0.19 -2.68 16 30 H 0.06 0.55 7.76 -51.93 -0.40 0.14 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.43 6.53 -51.93 -0.34 0.09 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.09 0.65 7.74 -51.93 -0.40 0.24 16 41 H 0.40 3.57 8.47 -40.82 -0.35 3.22 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.07 0.85 7.87 -51.93 -0.41 0.44 16 44 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 45 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 46 H 0.36 7.95 5.76 -40.82 -0.24 7.71 16 47 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 48 H 0.07 0.97 7.92 -51.93 -0.41 0.56 16 49 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 385.69 15.07 5.81 5.81 Total: -1.00 -31.98 385.69 -8.83 -40.80 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -8.72 Total: 9.02 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -1.09 Total: -7.56 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: 0.18 Total: -52.40 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: -0.29 Total: -12.34 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.71 Total: 16.65 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.98 -8.83 -40.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086384480.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.473 kcal (2) G-P(sol) polarization free energy of solvation -31.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds