Wall clock time and date at job start Tue Mar 31 2020 10:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47306 * 2 1 4 4 C 1.53004 * 109.47001 * 119.99834 * 2 1 3 5 5 H 1.09004 * 109.86687 * 301.00603 * 4 2 1 6 6 O 1.43745 * 110.00102 * 62.09159 * 4 2 1 7 7 C 1.44381 * 106.97019 * 146.01076 * 6 4 2 8 8 C 1.54987 * 103.49262 * 319.93655 * 7 6 4 9 9 C 1.54097 * 109.87996 * 180.02562 * 4 2 1 10 10 H 1.08997 * 110.48714 * 357.20083 * 9 4 2 11 11 C 1.50701 * 110.48932 * 119.71953 * 9 4 2 12 12 O 1.21280 * 119.99781 * 359.97438 * 11 9 4 13 13 N 1.34771 * 119.99622 * 180.02562 * 11 9 4 14 14 C 1.46505 * 119.99622 * 179.97438 * 13 11 9 15 15 C 1.52997 * 109.47212 * 179.97438 * 14 13 11 16 16 H 1.09001 * 112.85054 * 45.33091 * 15 14 13 17 17 C 1.53782 * 113.61871 * 176.53036 * 15 14 13 18 18 C 1.53777 * 87.08471 * 139.98088 * 17 15 14 19 19 H 1.08993 * 113.61629 * 220.02081 * 18 17 15 20 20 N 1.46498 * 113.61442 * 89.19876 * 18 17 15 21 21 C 1.36933 * 120.00006 * 154.99938 * 20 18 17 22 22 H 1.08003 * 119.99845 * 0.02562 * 21 20 18 23 23 C 1.38814 * 120.00347 * 180.02562 * 21 20 18 24 24 N 1.31615 * 120.00138 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99747 * 359.97438 * 23 21 20 26 26 H 1.48507 * 109.46834 * 90.00217 * 25 23 21 27 27 H 1.48497 * 109.47358 * 209.99955 * 25 23 21 28 28 H 1.48500 * 109.47227 * 330.00650 * 25 23 21 29 29 C 1.53785 * 113.61570 * 274.13670 * 15 14 13 30 30 H 1.08997 * 109.47205 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47365 * 300.00651 * 1 2 3 32 32 H 1.09005 * 109.47084 * 60.00254 * 1 2 3 33 33 H 1.08997 * 109.47365 * 239.99349 * 2 1 3 34 34 H 1.09003 * 109.47273 * 180.02562 * 3 2 1 35 35 H 1.09005 * 109.46842 * 299.99895 * 3 2 1 36 36 H 1.08997 * 109.47440 * 59.99394 * 3 2 1 37 37 H 1.09006 * 110.61715 * 78.44389 * 7 6 4 38 38 H 1.09005 * 110.61531 * 201.43596 * 7 6 4 39 39 H 1.08999 * 110.91017 * 278.82933 * 8 7 6 40 40 H 1.09002 * 110.90825 * 155.22006 * 8 7 6 41 41 H 0.96996 * 120.00772 * 359.97438 * 13 11 9 42 42 H 1.09002 * 109.47068 * 299.99729 * 14 13 11 43 43 H 1.09001 * 109.47372 * 59.99816 * 14 13 11 44 44 H 1.09011 * 113.61074 * 254.53256 * 17 15 14 45 45 H 1.09000 * 113.61044 * 25.34248 * 17 15 14 46 46 H 0.96999 * 120.00187 * 335.00017 * 20 18 17 47 47 H 0.96999 * 119.99929 * 180.02562 * 24 23 21 48 48 H 1.09000 * 113.61195 * 334.56762 * 29 15 14 49 49 H 1.09001 * 113.61520 * 105.46896 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6656 -0.2229 2.1435 6 8 1.6078 -2.0921 1.2365 7 6 2.6557 -2.8702 1.8537 8 6 3.9547 -2.2284 1.3033 9 6 3.5809 -0.7262 1.2592 10 1 3.9697 -0.2606 0.3536 11 6 4.1029 -0.0162 2.4817 12 8 3.3276 0.4584 3.2846 13 7 5.4312 0.0922 2.6822 14 6 5.9386 0.7829 3.8704 15 6 7.4684 0.7642 3.8568 16 1 7.8862 1.0196 2.8830 17 6 8.1044 1.5396 5.0226 18 6 9.1377 0.4042 5.1109 19 1 9.3955 0.1269 6.1330 20 7 10.3148 0.6147 4.2645 21 6 11.5044 0.0171 4.5852 22 1 11.5747 -0.6098 5.4618 23 6 12.6199 0.2170 3.7835 24 7 13.7631 -0.3578 4.0915 25 14 12.4980 1.3008 2.2669 26 1 12.8184 2.7036 2.6340 27 1 13.4601 0.8257 1.2404 28 1 11.1187 1.2347 1.7209 29 6 8.0744 -0.5080 4.4726 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 2.6127 -2.7793 2.9392 38 1 2.5862 -3.9153 1.5520 39 1 4.1806 -2.6027 0.3048 40 1 4.7911 -2.4011 1.9805 41 1 6.0512 -0.2870 2.0399 42 1 5.5875 1.8148 3.8685 43 1 5.5774 0.2779 4.7663 44 1 8.5326 2.4978 4.7276 45 1 7.4610 1.6155 5.8991 46 1 10.2515 1.1775 3.4770 47 1 14.5427 -0.2178 3.5315 48 1 7.4233 -0.9943 5.1990 49 1 8.4784 -1.2007 3.7343 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086384480.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:51 Heat of formation + Delta-G solvation = -86.770611 kcal Electronic energy + Delta-G solvation = -26259.986549 eV Core-core repulsion = 22607.481445 eV Total energy + Delta-G solvation = -3652.505104 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.76346 -40.35288 -39.34504 -36.20104 -35.98307 -35.02017 -33.44690 -32.56027 -29.63401 -28.76067 -27.97449 -26.46901 -25.58510 -24.45144 -23.46256 -22.98532 -21.45933 -20.92129 -20.09454 -19.55656 -18.43859 -17.45994 -17.26851 -16.77700 -16.61705 -16.26534 -16.15746 -15.91447 -15.26847 -15.07760 -14.80534 -14.67914 -14.59534 -14.32297 -14.13809 -14.01335 -13.46588 -13.35840 -13.12299 -13.04388 -13.00792 -12.71773 -12.68989 -12.38698 -12.19869 -12.16261 -11.93706 -11.88377 -11.71610 -11.63886 -11.59640 -11.55362 -11.05143 -10.94198 -10.77264 -10.54599 -10.10086 -9.29770 -8.02606 -5.36460 1.37167 1.42031 1.49052 1.53359 2.10705 2.48284 2.81473 3.27644 3.43368 3.50976 3.56074 3.65292 3.74125 3.85318 3.98451 4.00318 4.04849 4.11317 4.23295 4.27318 4.32805 4.36861 4.45439 4.66860 4.69226 4.75639 4.76329 4.78499 4.81815 4.87259 4.92403 4.96643 4.97489 4.99694 5.07196 5.08495 5.18925 5.25609 5.31691 5.38611 5.41980 5.48766 5.54222 5.80807 5.89045 6.22619 6.49151 7.07926 7.16738 7.84597 8.03325 9.18885 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.021309 B = 0.002588 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.700856 B =10814.919245 C =10916.968607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.090 4.090 3 C -0.146 4.146 4 C 0.089 3.911 5 H 0.064 0.936 6 O -0.385 6.385 7 C 0.039 3.961 8 C -0.140 4.140 9 C -0.141 4.141 10 H 0.135 0.865 11 C 0.519 3.481 12 O -0.578 6.578 13 N -0.714 5.714 14 C 0.139 3.861 15 C -0.104 4.104 16 H 0.091 0.909 17 C -0.134 4.134 18 C 0.145 3.855 19 H 0.056 0.944 20 N -0.733 5.733 21 C -0.232 4.232 22 H 0.055 0.945 23 C -0.066 4.066 24 N -0.985 5.985 25 Si 0.957 3.043 26 H -0.280 1.280 27 H -0.297 1.297 28 H -0.247 1.247 29 C -0.154 4.154 30 H 0.054 0.946 31 H 0.045 0.955 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.044 0.956 37 H 0.048 0.952 38 H 0.115 0.885 39 H 0.111 0.889 40 H 0.091 0.909 41 H 0.413 0.587 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.105 0.895 46 H 0.367 0.633 47 H 0.258 0.742 48 H 0.089 0.911 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.210 0.138 -10.344 28.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 C -0.203 4.203 4 C 0.031 3.969 5 H 0.082 0.918 6 O -0.304 6.304 7 C -0.037 4.037 8 C -0.177 4.177 9 C -0.162 4.162 10 H 0.153 0.847 11 C 0.306 3.694 12 O -0.458 6.458 13 N -0.365 5.365 14 C 0.015 3.985 15 C -0.123 4.123 16 H 0.109 0.891 17 C -0.174 4.174 18 C 0.035 3.965 19 H 0.074 0.926 20 N -0.375 5.375 21 C -0.363 4.363 22 H 0.073 0.927 23 C -0.257 4.257 24 N -0.635 5.635 25 Si 0.784 3.216 26 H -0.207 1.207 27 H -0.224 1.224 28 H -0.171 1.171 29 C -0.194 4.194 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.133 0.867 39 H 0.129 0.871 40 H 0.109 0.891 41 H 0.249 0.751 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.123 0.877 46 H 0.201 0.799 47 H 0.067 0.933 48 H 0.108 0.892 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -26.781 0.284 -9.716 28.490 hybrid contribution 1.132 0.340 -0.599 1.325 sum -25.650 0.624 -10.315 27.653 Atomic orbital electron populations 1.21738 0.94421 1.01880 1.01855 1.21246 0.96955 0.96000 0.96655 1.21846 1.01132 0.94981 1.02344 1.22800 0.91124 0.83594 0.99357 0.91803 1.88849 1.42509 1.17916 1.81143 1.23706 0.85711 0.97351 0.96928 1.23213 0.98823 0.91002 1.04693 1.22790 0.97354 0.98298 0.97745 0.84723 1.20688 0.82300 0.79068 0.87311 1.90675 1.57142 1.50066 1.47883 1.45967 1.06630 1.57825 1.26119 1.21305 0.92547 0.96976 0.87663 1.22568 0.92689 0.97839 0.99174 0.89093 1.23361 0.97462 0.97780 0.98756 1.21371 0.85454 0.95997 0.93635 0.92605 1.42420 1.06863 1.58360 1.29838 1.19056 0.87376 1.22220 1.07684 0.92651 1.25539 0.95110 1.02365 1.02726 1.69888 1.01560 1.50054 1.41995 0.85388 0.78313 0.78520 0.79396 1.20676 1.22405 1.17088 1.23721 0.98693 0.96510 1.00464 0.92736 0.93570 0.91260 0.89503 0.92363 0.90622 0.93655 0.93371 0.86655 0.87102 0.89055 0.75059 0.91708 0.91734 0.91414 0.87709 0.79930 0.93348 0.89226 0.92668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.07 71.98 0.65 -1.52 16 2 C -0.09 -1.38 2.58 -10.79 -0.03 -1.41 16 3 C -0.15 -2.07 8.93 71.98 0.64 -1.42 16 4 C 0.09 1.72 2.59 30.97 0.08 1.80 16 5 H 0.06 1.63 6.43 -2.38 -0.02 1.61 16 6 O -0.38 -7.87 10.64 -148.98 -1.59 -9.45 16 7 C 0.04 0.62 7.72 72.66 0.56 1.18 16 8 C -0.14 -1.74 6.70 31.91 0.21 -1.53 16 9 C -0.14 -2.20 2.45 -10.53 -0.03 -2.22 16 10 H 0.14 1.53 6.48 -2.39 -0.02 1.51 16 11 C 0.52 10.98 7.05 87.66 0.62 11.60 16 12 O -0.58 -16.96 15.25 -3.03 -0.05 -17.01 16 13 N -0.71 -13.07 5.41 -463.06 -2.50 -15.57 16 14 C 0.14 2.88 5.50 86.38 0.47 3.36 16 15 C -0.10 -2.40 3.63 -10.27 -0.04 -2.44 16 16 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 17 C -0.13 -3.46 7.39 31.12 0.23 -3.23 16 18 C 0.14 5.01 4.57 45.58 0.21 5.22 16 19 H 0.06 2.08 8.10 -2.39 -0.02 2.06 16 20 N -0.73 -32.14 5.11 -320.18 -1.64 -33.78 16 21 C -0.23 -12.85 10.45 84.03 0.88 -11.98 16 22 H 0.06 3.39 8.06 -2.91 -0.02 3.37 16 23 C -0.07 -3.80 5.50 84.86 0.47 -3.34 16 24 N -0.98 -62.18 13.97 21.65 0.30 -61.88 16 25 Si 0.96 43.74 27.74 68.60 1.90 45.64 16 26 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 27 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 28 H -0.25 -9.84 6.52 99.48 0.65 -9.19 16 29 C -0.15 -4.25 7.44 31.18 0.23 -4.02 16 30 H 0.05 0.92 7.76 -2.39 -0.02 0.90 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.06 0.77 6.53 -2.39 -0.02 0.76 16 35 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 36 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 38 H 0.12 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.09 1.09 7.74 -2.39 -0.02 1.07 16 41 H 0.41 5.88 8.47 -92.71 -0.79 5.09 16 42 H 0.06 1.40 8.14 -2.39 -0.02 1.39 16 43 H 0.06 1.44 7.87 -2.39 -0.02 1.42 16 44 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 45 H 0.10 2.26 8.10 -2.39 -0.02 2.24 16 46 H 0.37 15.23 5.76 -92.71 -0.53 14.69 16 47 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 48 H 0.09 2.19 7.92 -2.39 -0.02 2.17 16 49 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -71.44 385.69 1.16 -70.29 By element: Atomic # 1 Polarization: 32.15 SS G_CDS: -0.44 Total: 31.71 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: 5.17 Total: -9.94 kcal Atomic # 7 Polarization: -107.39 SS G_CDS: -3.84 Total: -111.23 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -1.63 Total: -26.46 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.90 Total: 45.64 kcal Total: -71.44 1.16 -70.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086384480.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.484 kcal (2) G-P(sol) polarization free energy of solvation -71.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds