Wall clock time and date at job start Tue Mar 31 2020 10:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47513 * 2 1 4 4 C 1.52996 * 109.46933 * 120.00189 * 2 1 3 5 5 H 1.09002 * 110.41925 * 303.52432 * 4 2 1 6 6 O 1.44426 * 110.37277 * 181.21723 * 4 2 1 7 7 C 1.44428 * 105.27901 * 200.65605 * 6 4 2 8 8 C 1.54486 * 104.80007 * 40.50625 * 7 6 4 9 9 C 1.54479 * 110.37588 * 65.83584 * 4 2 1 10 10 H 1.09004 * 110.50721 * 261.59216 * 9 4 2 11 11 C 1.50695 * 110.51257 * 24.16201 * 9 4 2 12 12 O 1.21280 * 119.99600 * 63.23297 * 11 9 4 13 13 N 1.34774 * 120.00370 * 243.23615 * 11 9 4 14 14 C 1.46496 * 120.00138 * 179.72229 * 13 11 9 15 15 C 1.53003 * 109.47400 * 180.27446 * 14 13 11 16 16 H 1.09008 * 112.84887 * 43.80224 * 15 14 13 17 17 C 1.53780 * 113.61841 * 175.00179 * 15 14 13 18 18 C 1.53779 * 87.08294 * 139.98037 * 17 15 14 19 19 H 1.08997 * 113.61876 * 220.01694 * 18 17 15 20 20 N 1.46501 * 113.61073 * 89.19831 * 18 17 15 21 21 C 1.36945 * 119.99692 * 155.00469 * 20 18 17 22 22 H 1.08003 * 119.99730 * 359.97438 * 21 20 18 23 23 C 1.38808 * 119.99907 * 180.02562 * 21 20 18 24 24 N 1.31617 * 120.00326 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99872 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47039 * 89.99803 * 25 23 21 27 27 H 1.48496 * 109.46748 * 209.99646 * 25 23 21 28 28 H 1.48497 * 109.46868 * 329.99928 * 25 23 21 29 29 C 1.53779 * 113.61297 * 272.50086 * 15 14 13 30 30 H 1.09004 * 109.47368 * 59.99928 * 1 2 3 31 31 H 1.09006 * 109.47713 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46803 * 300.00222 * 1 2 3 33 33 H 1.09003 * 109.46803 * 239.99778 * 2 1 3 34 34 H 1.09001 * 109.47631 * 185.77575 * 3 2 1 35 35 H 1.09003 * 109.46832 * 305.77121 * 3 2 1 36 36 H 1.09000 * 109.47200 * 65.77040 * 3 2 1 37 37 H 1.08995 * 110.37352 * 159.34274 * 7 6 4 38 38 H 1.09000 * 110.36676 * 281.56979 * 7 6 4 39 39 H 1.08999 * 110.50830 * 217.37700 * 8 7 6 40 40 H 1.08998 * 110.50889 * 94.67228 * 8 7 6 41 41 H 0.97007 * 119.99961 * 359.97438 * 13 11 9 42 42 H 1.08998 * 109.47720 * 300.27581 * 14 13 11 43 43 H 1.09004 * 109.47269 * 60.27914 * 14 13 11 44 44 H 1.08996 * 113.61220 * 254.53374 * 17 15 14 45 45 H 1.09001 * 113.61377 * 25.43017 * 17 15 14 46 46 H 0.96993 * 120.00762 * 334.99951 * 20 18 17 47 47 H 0.96999 * 120.00669 * 180.02562 * 24 23 21 48 48 H 1.08997 * 113.61697 * 334.56062 * 29 15 14 49 49 H 1.09006 * 113.61733 * 105.46947 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6347 -0.2571 2.1484 6 8 3.4837 -0.7078 1.2834 7 6 3.8536 -1.7882 2.1677 8 6 2.8808 -2.9359 1.8170 9 6 1.6603 -2.2179 1.1988 10 1 0.7643 -2.4047 1.7909 11 6 1.4521 -2.6621 -0.2260 12 8 2.3755 -2.6319 -1.0117 13 7 0.2397 -3.0930 -0.6273 14 6 0.0358 -3.5191 -2.0140 15 6 -1.4193 -3.9512 -2.2061 16 1 -2.1288 -3.2684 -1.7386 17 6 -1.7704 -4.3032 -3.6614 18 6 -2.5988 -5.4692 -3.0967 19 1 -2.5146 -6.3869 -3.6788 20 7 -3.9874 -5.1113 -2.7968 21 6 -4.9570 -6.0784 -2.7872 22 1 -4.6979 -7.1049 -3.0011 23 6 -6.2728 -5.7393 -2.5035 24 7 -6.5885 -4.4883 -2.2434 25 14 -7.5954 -7.0584 -2.4911 26 1 -7.7099 -7.6317 -1.1260 27 1 -8.8953 -6.4597 -2.8872 28 1 -7.2323 -8.1325 -3.4501 29 6 -1.6720 -5.4304 -1.8701 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3635 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.1251 1.4442 -0.1034 35 1 1.5948 1.9852 -0.8338 36 1 1.7636 1.9256 0.9371 37 1 4.8834 -2.0938 1.9833 38 1 3.7284 -1.4869 3.2077 39 1 2.5897 -3.4781 2.7166 40 1 3.3336 -3.6122 1.0919 41 1 -0.4988 -3.1174 0.0012 42 1 0.2604 -2.6905 -2.6856 43 1 0.6962 -4.3571 -2.2375 44 1 -2.3705 -3.5432 -4.1617 45 1 -0.9123 -4.6232 -4.2524 46 1 -4.2202 -4.1895 -2.6050 47 1 -7.5079 -4.2513 -2.0448 48 1 -0.7871 -6.0586 -1.9715 49 1 -2.1929 -5.5806 -0.9244 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086384481.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:55 Heat of formation + Delta-G solvation = -62.515103 kcal Electronic energy + Delta-G solvation = -26613.191123 eV Core-core repulsion = 22961.737817 eV Total energy + Delta-G solvation = -3651.453306 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.98970 -39.02723 -38.11291 -35.30487 -34.64944 -33.25471 -32.49215 -30.22330 -28.93005 -27.35498 -27.16263 -25.08979 -24.12768 -23.51164 -22.38603 -21.55511 -21.09100 -19.74772 -18.37098 -17.43253 -17.24928 -16.79550 -16.15726 -15.87189 -15.57496 -15.00071 -14.91472 -14.34001 -14.08299 -13.84775 -13.67962 -13.53332 -13.38608 -12.94809 -12.92444 -12.48429 -12.33911 -12.23273 -12.11831 -11.94103 -11.87181 -11.46469 -11.38184 -11.12565 -11.07282 -10.91039 -10.85518 -10.73130 -10.51271 -10.21606 -10.11358 -9.98415 -9.72903 -9.70531 -9.43841 -8.96862 -8.90478 -7.03739 -5.84264 -3.13379 2.54059 3.12434 3.39118 3.44758 3.46277 3.59611 4.17604 4.35558 4.52582 4.55773 4.71934 4.79994 4.85868 4.98513 5.02114 5.03447 5.07666 5.09083 5.20696 5.34210 5.42007 5.42778 5.47395 5.49279 5.55485 5.59911 5.67446 5.70308 5.73738 5.78692 5.84498 5.93346 5.97942 6.08049 6.15485 6.18364 6.19258 6.34320 6.40813 6.56417 6.61718 6.70875 6.87107 7.00852 7.48472 7.65728 8.19967 8.34965 9.45692 10.03062 10.37275 11.38142 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.022200 B = 0.002616 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.983679 B =10702.568131 C =10943.878630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.107 4.107 3 C -0.139 4.139 4 C 0.101 3.899 5 H 0.077 0.923 6 O -0.359 6.359 7 C 0.048 3.952 8 C -0.139 4.139 9 C -0.144 4.144 10 H 0.100 0.900 11 C 0.526 3.474 12 O -0.535 6.535 13 N -0.723 5.723 14 C 0.131 3.869 15 C -0.119 4.119 16 H 0.093 0.907 17 C -0.148 4.148 18 C 0.167 3.833 19 H 0.062 0.938 20 N -0.706 5.706 21 C -0.242 4.242 22 H 0.072 0.928 23 C -0.012 4.012 24 N -0.933 5.933 25 Si 0.908 3.092 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.281 1.281 29 C -0.168 4.168 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.092 0.908 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.093 0.907 38 H 0.059 0.941 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.401 0.599 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.077 0.923 46 H 0.385 0.615 47 H 0.256 0.744 48 H 0.067 0.933 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.425 7.712 9.093 21.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.125 4.125 3 C -0.196 4.196 4 C 0.043 3.957 5 H 0.095 0.905 6 O -0.277 6.277 7 C -0.029 4.029 8 C -0.177 4.177 9 C -0.166 4.166 10 H 0.118 0.882 11 C 0.312 3.688 12 O -0.412 6.412 13 N -0.374 5.374 14 C 0.008 3.992 15 C -0.137 4.137 16 H 0.111 0.889 17 C -0.188 4.188 18 C 0.055 3.945 19 H 0.080 0.920 20 N -0.344 5.344 21 C -0.373 4.373 22 H 0.090 0.910 23 C -0.209 4.209 24 N -0.581 5.581 25 Si 0.739 3.261 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.207 1.207 29 C -0.209 4.209 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.111 0.889 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.111 0.889 38 H 0.078 0.922 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.236 0.764 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.095 0.905 46 H 0.219 0.781 47 H 0.066 0.934 48 H 0.086 0.914 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 19.075 7.716 8.361 22.210 hybrid contribution -1.412 -0.575 0.675 1.667 sum 17.663 7.141 9.036 21.086 Atomic orbital electron populations 1.21967 0.94046 1.02697 1.02422 1.21402 0.95882 0.97276 0.97941 1.21702 1.01638 0.94883 1.01375 1.22900 0.82101 0.92004 0.98712 0.90512 1.89179 1.19788 1.51879 1.66892 1.23367 0.99561 0.86246 0.93757 1.22907 0.94389 0.98982 1.01460 1.22803 1.00958 0.97843 0.94979 0.88211 1.20123 0.82630 0.76666 0.89407 1.90709 1.41494 1.53987 1.54983 1.46250 1.11775 1.66055 1.13354 1.21476 0.96860 0.99373 0.81532 1.22703 0.93903 0.98099 0.99043 0.88925 1.23444 1.00107 1.00581 0.94645 1.21051 0.84953 0.95277 0.93217 0.92004 1.42169 1.00958 1.08683 1.82618 1.19291 0.87787 0.90003 1.40267 0.91005 1.24760 0.97348 0.96352 1.02394 1.69655 1.18283 1.15931 1.54195 0.86174 0.81521 0.80720 0.77677 1.21681 1.21734 1.20684 1.23887 1.00427 0.94222 1.02411 0.91793 0.92018 0.92467 0.88939 0.92063 0.92679 0.92982 0.88926 0.92235 0.89840 0.89668 0.76405 0.91843 0.91660 0.91329 0.90487 0.78118 0.93426 0.91439 0.91556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 8.88 37.16 0.33 -1.15 16 2 C -0.11 -1.15 2.22 -90.63 -0.20 -1.35 16 3 C -0.14 -1.36 8.96 37.15 0.33 -1.03 16 4 C 0.10 1.02 2.69 -25.96 -0.07 0.95 16 5 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 6 O -0.36 -4.20 10.79 -35.23 -0.38 -4.58 16 7 C 0.05 0.41 7.63 37.94 0.29 0.70 16 8 C -0.14 -1.21 6.62 -25.16 -0.17 -1.38 16 9 C -0.14 -1.38 2.91 -90.21 -0.26 -1.64 16 10 H 0.10 0.72 7.98 -51.93 -0.41 0.31 16 11 C 0.53 6.52 4.24 -10.99 -0.05 6.47 16 12 O -0.53 -8.66 15.26 5.56 0.08 -8.57 16 13 N -0.72 -8.28 4.30 -60.30 -0.26 -8.54 16 14 C 0.13 1.69 5.51 -4.04 -0.02 1.66 16 15 C -0.12 -1.70 3.63 -89.81 -0.33 -2.03 16 16 H 0.09 1.42 8.14 -51.92 -0.42 1.00 16 17 C -0.15 -2.32 7.39 -25.92 -0.19 -2.51 16 18 C 0.17 3.19 4.56 -67.12 -0.31 2.88 16 19 H 0.06 1.20 8.10 -51.93 -0.42 0.77 16 20 N -0.71 -17.05 5.31 -52.64 -0.28 -17.33 16 21 C -0.24 -6.56 9.97 -15.06 -0.15 -6.71 16 22 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 23 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 24 N -0.93 -27.43 13.06 55.49 0.72 -26.70 16 25 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 29 C -0.17 -2.71 7.43 -25.92 -0.19 -2.90 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.59 4.97 -51.93 -0.26 0.34 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 1.27 5.81 -51.93 -0.30 0.97 16 34 H 0.06 0.66 7.87 -51.93 -0.41 0.25 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.88 7.47 -51.93 -0.39 0.50 16 41 H 0.40 3.96 7.89 -40.82 -0.32 3.64 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.07 0.89 7.84 -51.93 -0.41 0.48 16 44 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 46 H 0.38 9.81 7.90 -40.82 -0.32 9.49 16 47 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 48 H 0.07 0.98 7.90 -51.93 -0.41 0.57 16 49 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 383.42 15.07 5.78 5.78 Total: -1.00 -31.61 383.42 -9.13 -40.74 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -8.69 Total: 10.79 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -1.08 Total: -8.48 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: 0.19 Total: -52.57 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -0.30 Total: -13.15 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.61 -9.13 -40.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086384481.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.780 kcal (2) G-P(sol) polarization free energy of solvation -31.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds