Wall clock time and date at job start Tue Mar 31 2020 10:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47513 * 2 1 4 4 C 1.52996 * 109.46933 * 120.00189 * 2 1 3 5 5 H 1.09002 * 110.41925 * 303.52432 * 4 2 1 6 6 O 1.44426 * 110.37277 * 181.21723 * 4 2 1 7 7 C 1.44428 * 105.27901 * 200.65605 * 6 4 2 8 8 C 1.54486 * 104.80007 * 40.50625 * 7 6 4 9 9 C 1.54479 * 110.37588 * 65.83584 * 4 2 1 10 10 H 1.09004 * 110.50721 * 261.59216 * 9 4 2 11 11 C 1.50695 * 110.51257 * 24.16201 * 9 4 2 12 12 O 1.21280 * 119.99600 * 63.23297 * 11 9 4 13 13 N 1.34774 * 120.00370 * 243.23615 * 11 9 4 14 14 C 1.46496 * 120.00138 * 179.72229 * 13 11 9 15 15 C 1.53003 * 109.47400 * 180.27446 * 14 13 11 16 16 H 1.09008 * 112.84887 * 43.80224 * 15 14 13 17 17 C 1.53780 * 113.61841 * 175.00179 * 15 14 13 18 18 C 1.53779 * 87.08294 * 139.98037 * 17 15 14 19 19 H 1.08997 * 113.61876 * 220.01694 * 18 17 15 20 20 N 1.46501 * 113.61073 * 89.19831 * 18 17 15 21 21 C 1.36945 * 119.99692 * 155.00469 * 20 18 17 22 22 H 1.08003 * 119.99730 * 359.97438 * 21 20 18 23 23 C 1.38808 * 119.99907 * 180.02562 * 21 20 18 24 24 N 1.31617 * 120.00326 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99872 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47039 * 89.99803 * 25 23 21 27 27 H 1.48496 * 109.46748 * 209.99646 * 25 23 21 28 28 H 1.48497 * 109.46868 * 329.99928 * 25 23 21 29 29 C 1.53779 * 113.61297 * 272.50086 * 15 14 13 30 30 H 1.09004 * 109.47368 * 59.99928 * 1 2 3 31 31 H 1.09006 * 109.47713 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46803 * 300.00222 * 1 2 3 33 33 H 1.09003 * 109.46803 * 239.99778 * 2 1 3 34 34 H 1.09001 * 109.47631 * 185.77575 * 3 2 1 35 35 H 1.09003 * 109.46832 * 305.77121 * 3 2 1 36 36 H 1.09000 * 109.47200 * 65.77040 * 3 2 1 37 37 H 1.08995 * 110.37352 * 159.34274 * 7 6 4 38 38 H 1.09000 * 110.36676 * 281.56979 * 7 6 4 39 39 H 1.08999 * 110.50830 * 217.37700 * 8 7 6 40 40 H 1.08998 * 110.50889 * 94.67228 * 8 7 6 41 41 H 0.97007 * 119.99961 * 359.97438 * 13 11 9 42 42 H 1.08998 * 109.47720 * 300.27581 * 14 13 11 43 43 H 1.09004 * 109.47269 * 60.27914 * 14 13 11 44 44 H 1.08996 * 113.61220 * 254.53374 * 17 15 14 45 45 H 1.09001 * 113.61377 * 25.43017 * 17 15 14 46 46 H 0.96993 * 120.00762 * 334.99951 * 20 18 17 47 47 H 0.96999 * 120.00669 * 180.02562 * 24 23 21 48 48 H 1.08997 * 113.61697 * 334.56062 * 29 15 14 49 49 H 1.09006 * 113.61733 * 105.46947 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6347 -0.2571 2.1484 6 8 3.4837 -0.7078 1.2834 7 6 3.8536 -1.7882 2.1677 8 6 2.8808 -2.9359 1.8170 9 6 1.6603 -2.2179 1.1988 10 1 0.7643 -2.4047 1.7909 11 6 1.4521 -2.6621 -0.2260 12 8 2.3755 -2.6319 -1.0117 13 7 0.2397 -3.0930 -0.6273 14 6 0.0358 -3.5191 -2.0140 15 6 -1.4193 -3.9512 -2.2061 16 1 -2.1288 -3.2684 -1.7386 17 6 -1.7704 -4.3032 -3.6614 18 6 -2.5988 -5.4692 -3.0967 19 1 -2.5146 -6.3869 -3.6788 20 7 -3.9874 -5.1113 -2.7968 21 6 -4.9570 -6.0784 -2.7872 22 1 -4.6979 -7.1049 -3.0011 23 6 -6.2728 -5.7393 -2.5035 24 7 -6.5885 -4.4883 -2.2434 25 14 -7.5954 -7.0584 -2.4911 26 1 -7.7099 -7.6317 -1.1260 27 1 -8.8953 -6.4597 -2.8872 28 1 -7.2323 -8.1325 -3.4501 29 6 -1.6720 -5.4304 -1.8701 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3635 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.1251 1.4442 -0.1034 35 1 1.5948 1.9852 -0.8338 36 1 1.7636 1.9256 0.9371 37 1 4.8834 -2.0938 1.9833 38 1 3.7284 -1.4869 3.2077 39 1 2.5897 -3.4781 2.7166 40 1 3.3336 -3.6122 1.0919 41 1 -0.4988 -3.1174 0.0012 42 1 0.2604 -2.6905 -2.6856 43 1 0.6962 -4.3571 -2.2375 44 1 -2.3705 -3.5432 -4.1617 45 1 -0.9123 -4.6232 -4.2524 46 1 -4.2202 -4.1895 -2.6050 47 1 -7.5079 -4.2513 -2.0448 48 1 -0.7871 -6.0586 -1.9715 49 1 -2.1929 -5.5806 -0.9244 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086384481.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:54 Heat of formation + Delta-G solvation = -83.011059 kcal Electronic energy + Delta-G solvation = -26614.079894 eV Core-core repulsion = 22961.737817 eV Total energy + Delta-G solvation = -3652.342077 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.85610 -40.25545 -39.17202 -36.12375 -35.94889 -34.93763 -33.31470 -32.03197 -29.76519 -28.50955 -27.97305 -26.43717 -25.78225 -24.61909 -23.36252 -22.66658 -21.91894 -20.72047 -19.71905 -19.30989 -18.15924 -17.72294 -17.08592 -16.74896 -16.63189 -16.45389 -15.97933 -15.78698 -15.47802 -15.02818 -14.68570 -14.60681 -14.39518 -14.37087 -13.95092 -13.67407 -13.31216 -13.19104 -13.00479 -12.92880 -12.89643 -12.87504 -12.61835 -12.57883 -12.16814 -12.13483 -12.06561 -11.89238 -11.70275 -11.58724 -11.48414 -11.43357 -11.00438 -10.87184 -10.76182 -10.54000 -9.98491 -8.99592 -7.95116 -5.23289 1.48576 1.49313 1.57878 1.59592 2.18896 2.55948 2.89973 3.37385 3.41954 3.59711 3.71231 3.77111 3.79717 3.93803 4.02299 4.03824 4.15861 4.18198 4.29008 4.32325 4.34164 4.40548 4.41287 4.61610 4.71325 4.73621 4.75370 4.78119 4.85091 4.87684 4.92598 4.94772 4.99505 4.99918 5.06398 5.11686 5.20631 5.29098 5.35331 5.37732 5.38879 5.50031 5.56277 5.66479 5.92467 6.28661 6.56213 7.25958 7.33861 8.10749 8.33314 9.28051 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.022200 B = 0.002616 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.983679 B =10702.568131 C =10943.878630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.107 4.107 3 C -0.135 4.135 4 C 0.099 3.901 5 H 0.102 0.898 6 O -0.389 6.389 7 C 0.043 3.957 8 C -0.137 4.137 9 C -0.143 4.143 10 H 0.130 0.870 11 C 0.526 3.474 12 O -0.577 6.577 13 N -0.716 5.716 14 C 0.141 3.859 15 C -0.099 4.099 16 H 0.084 0.916 17 C -0.137 4.137 18 C 0.144 3.856 19 H 0.058 0.942 20 N -0.719 5.719 21 C -0.242 4.242 22 H 0.075 0.925 23 C -0.074 4.074 24 N -0.968 5.968 25 Si 0.971 3.029 26 H -0.287 1.287 27 H -0.297 1.297 28 H -0.271 1.271 29 C -0.152 4.152 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.046 0.954 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.113 0.887 40 H 0.062 0.938 41 H 0.411 0.589 42 H 0.058 0.942 43 H 0.064 0.936 44 H 0.057 0.943 45 H 0.102 0.898 46 H 0.375 0.625 47 H 0.251 0.749 48 H 0.089 0.911 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.932 7.288 10.612 22.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.126 4.126 3 C -0.193 4.193 4 C 0.041 3.959 5 H 0.120 0.880 6 O -0.308 6.308 7 C -0.034 4.034 8 C -0.175 4.175 9 C -0.165 4.165 10 H 0.148 0.852 11 C 0.314 3.686 12 O -0.457 6.457 13 N -0.368 5.368 14 C 0.018 3.982 15 C -0.118 4.118 16 H 0.102 0.898 17 C -0.176 4.176 18 C 0.034 3.966 19 H 0.076 0.924 20 N -0.358 5.358 21 C -0.374 4.374 22 H 0.093 0.907 23 C -0.266 4.266 24 N -0.618 5.618 25 Si 0.800 3.200 26 H -0.214 1.214 27 H -0.223 1.223 28 H -0.196 1.196 29 C -0.193 4.193 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.112 0.888 38 H 0.104 0.896 39 H 0.131 0.869 40 H 0.081 0.919 41 H 0.248 0.752 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.121 0.879 46 H 0.207 0.793 47 H 0.060 0.940 48 H 0.108 0.892 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 19.617 7.261 9.884 23.135 hybrid contribution -1.467 -0.459 0.151 1.544 sum 18.150 6.802 10.035 21.827 Atomic orbital electron populations 1.21940 0.93090 1.02765 1.03005 1.21351 0.96625 0.97438 0.97136 1.21668 1.00657 0.94645 1.02292 1.23033 0.81603 0.92191 0.99027 0.88029 1.89152 1.20768 1.52963 1.67930 1.23567 0.99662 0.85540 0.94598 1.22932 0.93847 0.98762 1.01961 1.22905 1.02674 0.97710 0.93195 0.85212 1.20634 0.81960 0.75670 0.90356 1.90690 1.42855 1.55696 1.56447 1.46171 1.12072 1.65588 1.12924 1.21243 0.95418 0.99113 0.82456 1.22472 0.94614 0.96896 0.97816 0.89815 1.23354 0.99964 0.98653 0.95613 1.21372 0.83469 0.96519 0.95246 0.92414 1.42290 1.02653 1.07695 1.83120 1.19655 0.88589 0.90690 1.38475 0.90670 1.25522 0.99481 0.98274 1.03325 1.69799 1.18233 1.17700 1.56106 0.85176 0.78568 0.78495 0.77743 1.21378 1.22326 1.19577 1.23699 0.99971 0.95717 0.99882 0.92531 0.92159 0.90580 0.92428 0.93494 0.92519 0.91395 0.88848 0.89650 0.86889 0.91932 0.75236 0.92327 0.91806 0.92428 0.87935 0.79293 0.94001 0.89224 0.93131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 8.88 71.98 0.64 -2.02 16 2 C -0.11 -2.22 2.22 -10.80 -0.02 -2.25 16 3 C -0.14 -2.57 8.96 71.98 0.65 -1.92 16 4 C 0.10 1.81 2.69 31.10 0.08 1.89 16 5 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 6 O -0.39 -8.68 10.79 -148.98 -1.61 -10.29 16 7 C 0.04 0.65 7.63 72.49 0.55 1.21 16 8 C -0.14 -2.09 6.62 31.61 0.21 -1.88 16 9 C -0.14 -2.43 2.91 -10.53 -0.03 -2.46 16 10 H 0.13 1.40 7.98 -2.38 -0.02 1.38 16 11 C 0.53 12.53 4.24 87.66 0.37 12.90 16 12 O -0.58 -18.80 15.26 -3.03 -0.05 -18.85 16 13 N -0.72 -15.38 4.30 -463.07 -1.99 -17.37 16 14 C 0.14 3.46 5.51 86.38 0.48 3.94 16 15 C -0.10 -2.72 3.63 -10.27 -0.04 -2.75 16 16 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 17 C -0.14 -4.11 7.39 31.12 0.23 -3.88 16 18 C 0.14 5.38 4.56 45.52 0.21 5.59 16 19 H 0.06 2.19 8.10 -2.39 -0.02 2.17 16 20 N -0.72 -34.92 5.31 -320.44 -1.70 -36.62 16 21 C -0.24 -13.12 9.97 84.03 0.84 -12.28 16 22 H 0.08 3.93 7.83 -2.91 -0.02 3.90 16 23 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 24 N -0.97 -57.71 13.06 21.65 0.28 -57.43 16 25 Si 0.97 45.16 29.55 68.60 2.03 47.18 16 26 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 27 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 28 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 29 C -0.15 -4.67 7.43 31.12 0.23 -4.44 16 30 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.06 1.06 4.97 -2.38 -0.01 1.05 16 32 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.06 1.62 5.81 -2.39 -0.01 1.60 16 34 H 0.05 1.01 7.87 -2.39 -0.02 0.99 16 35 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.09 0.86 8.14 -2.39 -0.02 0.85 16 39 H 0.11 1.03 8.14 -2.39 -0.02 1.02 16 40 H 0.06 1.25 7.47 -2.39 -0.02 1.23 16 41 H 0.41 7.28 7.89 -92.70 -0.73 6.55 16 42 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.06 1.62 7.84 -2.39 -0.02 1.61 16 44 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.10 2.58 8.10 -2.39 -0.02 2.56 16 46 H 0.37 19.43 7.90 -92.71 -0.73 18.70 16 47 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 48 H 0.09 2.38 7.90 -2.39 -0.02 2.36 16 49 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 Total: -1.00 -69.46 383.42 1.29 -68.17 By element: Atomic # 1 Polarization: 37.76 SS G_CDS: -0.53 Total: 37.23 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: 4.86 Total: -12.03 kcal Atomic # 7 Polarization: -108.00 SS G_CDS: -3.41 Total: -111.41 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -1.65 Total: -29.14 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -69.46 1.29 -68.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086384481.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.846 kcal (2) G-P(sol) polarization free energy of solvation -69.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds