Wall clock time and date at job start Tue Mar 31 2020 10:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47257 * 2 1 4 4 H 1.08999 * 109.48964 * 54.96832 * 3 2 1 5 5 O 1.42912 * 109.53506 * 294.97637 * 3 2 1 6 6 C 1.42905 * 114.15302 * 178.92217 * 5 3 2 7 7 C 1.53098 * 109.41122 * 61.12569 * 6 5 3 8 8 C 1.53178 * 109.16230 * 302.38831 * 7 6 5 9 9 C 1.53095 * 109.48181 * 175.00200 * 3 2 1 10 10 H 1.08997 * 109.52218 * 57.62145 * 9 3 2 11 11 C 1.50698 * 109.51993 * 297.49409 * 9 3 2 12 12 O 1.21283 * 120.00472 * 0.13062 * 11 9 3 13 13 N 1.34777 * 119.99538 * 180.12400 * 11 9 3 14 14 C 1.46499 * 119.99665 * 179.72653 * 13 11 9 15 15 C 1.53004 * 109.47198 * 180.27868 * 14 13 11 16 16 H 1.09005 * 112.84860 * 43.80350 * 15 14 13 17 17 C 1.53785 * 113.61568 * 175.00089 * 15 14 13 18 18 C 1.53778 * 87.07976 * 139.98012 * 17 15 14 19 19 H 1.08998 * 113.61294 * 220.01591 * 18 17 15 20 20 N 1.46504 * 113.61304 * 89.20115 * 18 17 15 21 21 C 1.36935 * 119.99956 * 154.99909 * 20 18 17 22 22 H 1.08007 * 119.99860 * 359.97438 * 21 20 18 23 23 C 1.38810 * 119.99903 * 179.97438 * 21 20 18 24 24 N 1.31621 * 119.99765 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 120.00198 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47010 * 90.00026 * 25 23 21 27 27 H 1.48500 * 109.47166 * 209.99930 * 25 23 21 28 28 H 1.48497 * 109.46726 * 329.99765 * 25 23 21 29 29 C 1.53776 * 87.08288 * 334.56599 * 18 17 15 30 30 H 1.09005 * 109.46876 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46877 * 299.99870 * 1 2 3 32 32 H 1.08995 * 109.47505 * 60.00315 * 1 2 3 33 33 H 1.09002 * 109.47581 * 240.00157 * 2 1 3 34 34 H 1.08996 * 109.47508 * 120.00240 * 2 1 3 35 35 H 1.08995 * 109.48408 * 301.14443 * 6 5 3 36 36 H 1.09002 * 109.48353 * 181.10258 * 6 5 3 37 37 H 1.09004 * 109.52145 * 182.48569 * 7 6 5 38 38 H 1.08999 * 109.52477 * 62.29656 * 7 6 5 39 39 H 1.08997 * 109.54506 * 297.11368 * 8 7 6 40 40 H 1.08999 * 109.54134 * 176.84928 * 8 7 6 41 41 H 0.97001 * 120.00485 * 0.02562 * 13 11 9 42 42 H 1.09009 * 109.47454 * 300.27637 * 14 13 11 43 43 H 1.08998 * 109.47492 * 60.27932 * 14 13 11 44 44 H 1.08997 * 113.61329 * 254.53183 * 17 15 14 45 45 H 1.08996 * 113.61163 * 25.42941 * 17 15 14 46 46 H 0.96997 * 119.99825 * 334.99390 * 20 18 17 47 47 H 0.96998 * 120.00017 * 180.02562 * 24 23 21 48 48 H 1.08997 * 113.61844 * 270.88472 * 29 18 17 49 49 H 1.09007 * 113.61444 * 139.97790 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6051 1.9820 0.8414 5 8 1.6631 2.0826 -1.2209 6 6 2.0711 3.4490 -1.3149 7 6 3.5982 3.5301 -1.2427 8 6 4.0747 2.8880 0.0638 9 6 3.5658 1.4446 0.1257 10 1 3.9995 0.8700 -0.6927 11 6 3.9634 0.8264 1.4413 12 8 3.1113 0.4212 2.2033 13 7 5.2662 0.7237 1.7711 14 6 5.6526 0.1282 3.0526 15 6 7.1772 0.1388 3.1809 16 1 7.6220 1.0826 2.8653 17 6 7.6840 -0.3549 4.5463 18 6 8.8034 -1.0796 3.7806 19 1 9.0302 -2.0708 4.1733 20 7 10.0010 -0.2605 3.5775 21 6 11.2185 -0.8607 3.3970 22 1 11.2959 -1.9379 3.4047 23 6 12.3531 -0.0846 3.2041 24 7 13.5234 -0.6615 3.0311 25 14 12.2192 1.7786 3.1915 26 1 12.4017 2.2973 4.5710 27 1 13.2693 2.3444 2.3070 28 1 10.8802 2.1752 2.6866 29 6 7.8554 -1.0988 2.5700 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.6377 4.0153 -0.4907 36 1 1.7294 3.8661 -2.2622 37 1 3.9092 4.5745 -1.2698 38 1 4.0317 2.9979 -2.0894 39 1 3.6814 3.4500 0.9109 40 1 5.1642 2.8922 0.0960 41 1 5.9478 1.0480 1.1619 42 1 5.2154 0.7049 3.8678 43 1 5.2912 -0.8990 3.0997 44 1 8.0444 0.4447 5.1934 45 1 6.9924 -1.0296 5.0507 46 1 9.9314 0.7069 3.5709 47 1 14.3163 -0.1191 2.8967 48 1 7.2107 -1.9769 2.5341 49 1 8.3543 -0.8997 1.6214 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086385236.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:12 Heat of formation + Delta-G solvation = -69.382727 kcal Electronic energy + Delta-G solvation = -26236.030467 eV Core-core repulsion = 22584.279358 eV Total energy + Delta-G solvation = -3651.751108 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.81050 -39.21727 -38.42614 -35.03887 -34.17743 -33.90879 -33.20927 -30.82978 -30.33817 -27.68472 -25.68195 -25.23660 -24.63070 -23.37122 -21.87471 -21.51706 -21.30824 -20.22531 -18.67539 -17.74092 -17.50904 -16.83019 -16.11982 -15.76074 -15.60020 -15.13788 -14.84492 -14.61049 -14.46974 -14.08826 -13.85389 -13.68805 -13.59251 -13.40571 -13.00858 -12.80052 -12.55355 -12.47410 -12.10304 -11.99201 -11.67881 -11.57615 -11.54477 -11.41324 -11.21876 -10.98683 -10.96001 -10.57168 -10.54399 -10.29734 -10.18636 -9.91425 -9.75711 -9.66091 -9.51624 -9.11177 -8.96102 -7.35747 -5.84563 -3.21003 2.45123 2.97742 3.29288 3.32743 3.38741 3.53602 4.20381 4.33156 4.36334 4.50946 4.53786 4.73080 4.82714 4.87925 4.88903 4.92117 5.04047 5.07415 5.11455 5.24572 5.30044 5.34367 5.37876 5.41963 5.45005 5.45620 5.53043 5.58633 5.70345 5.74310 5.80485 5.80604 5.86250 5.91126 6.02913 6.07285 6.17573 6.19288 6.32885 6.44003 6.56724 6.68512 6.83857 6.92237 7.36106 7.93172 8.06602 8.35104 9.12628 9.84792 10.03928 11.33544 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.019890 B = 0.002705 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.405011 B =10347.895929 C =11266.792138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 C 0.115 3.885 4 H 0.065 0.935 5 O -0.375 6.375 6 C 0.058 3.942 7 C -0.155 4.155 8 C -0.115 4.115 9 C -0.141 4.141 10 H 0.106 0.894 11 C 0.519 3.481 12 O -0.540 6.540 13 N -0.722 5.722 14 C 0.130 3.870 15 C -0.124 4.124 16 H 0.089 0.911 17 C -0.149 4.149 18 C 0.173 3.827 19 H 0.071 0.929 20 N -0.730 5.730 21 C -0.247 4.247 22 H 0.092 0.908 23 C 0.006 3.994 24 N -0.931 5.931 25 Si 0.885 3.115 26 H -0.283 1.283 27 H -0.290 1.290 28 H -0.278 1.278 29 C -0.167 4.167 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.099 0.901 35 H 0.050 0.950 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.402 0.598 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.082 0.918 46 H 0.362 0.638 47 H 0.260 0.740 48 H 0.072 0.928 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.539 7.370 -7.420 26.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.162 4.162 3 C 0.056 3.944 4 H 0.083 0.917 5 O -0.294 6.294 6 C -0.019 4.019 7 C -0.192 4.192 8 C -0.153 4.153 9 C -0.163 4.163 10 H 0.124 0.876 11 C 0.305 3.695 12 O -0.417 6.417 13 N -0.373 5.373 14 C 0.007 3.993 15 C -0.143 4.143 16 H 0.107 0.893 17 C -0.188 4.188 18 C 0.061 3.939 19 H 0.090 0.910 20 N -0.370 5.370 21 C -0.377 4.377 22 H 0.110 0.890 23 C -0.190 4.190 24 N -0.579 5.579 25 Si 0.715 3.285 26 H -0.210 1.210 27 H -0.217 1.217 28 H -0.205 1.205 29 C -0.207 4.207 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.117 0.883 35 H 0.068 0.932 36 H 0.113 0.887 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.236 0.764 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.100 0.900 46 H 0.195 0.805 47 H 0.070 0.930 48 H 0.091 0.909 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -25.005 6.804 -7.018 26.848 hybrid contribution 0.686 1.797 -0.236 1.938 sum -24.319 8.601 -7.254 26.796 Atomic orbital electron populations 1.21658 0.95353 1.01375 1.01822 1.21769 0.96818 0.93892 1.03687 1.21856 0.90503 0.95088 0.86907 0.91664 1.87957 1.78153 1.24473 1.38833 1.22588 0.93678 0.83462 1.02150 1.22201 0.97101 1.01856 0.98084 1.21597 1.01510 0.93577 0.98574 1.22030 0.99358 0.98092 0.96789 0.87645 1.20348 0.82591 0.78650 0.87884 1.90662 1.49748 1.49047 1.52283 1.46095 1.07239 1.62419 1.21552 1.21483 0.94952 0.98344 0.84484 1.22758 0.92272 0.99803 0.99423 0.89293 1.23462 0.99245 1.00790 0.95322 1.20999 0.85323 0.94844 0.92746 0.91049 1.42513 1.03710 1.03931 1.86834 1.19114 0.83021 0.93657 1.41909 0.89010 1.24687 0.95272 0.97360 1.01728 1.69697 0.98167 1.34305 1.55695 0.86555 0.76900 0.87285 0.77764 1.20999 1.21656 1.20463 1.23858 0.99564 0.95957 1.01360 0.92890 0.92958 0.92406 0.91839 0.88313 0.93197 0.88732 0.90366 0.90614 0.91176 0.90630 0.76407 0.91792 0.91323 0.91437 0.89969 0.80546 0.92952 0.90914 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.81 37.16 0.36 -0.99 16 2 C -0.12 -1.29 5.41 -26.73 -0.14 -1.43 16 3 C 0.11 1.15 1.78 -26.68 -0.05 1.11 16 4 H 0.07 0.72 8.04 -51.93 -0.42 0.30 16 5 O -0.38 -3.71 9.95 -35.23 -0.35 -4.06 16 6 C 0.06 0.42 6.85 37.21 0.25 0.68 16 7 C -0.15 -1.01 6.14 -26.59 -0.16 -1.18 16 8 C -0.11 -0.87 5.18 -26.55 -0.14 -1.01 16 9 C -0.14 -1.30 2.23 -91.63 -0.20 -1.51 16 10 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 11 C 0.52 5.97 6.84 -10.99 -0.08 5.90 16 12 O -0.54 -7.83 13.84 5.55 0.08 -7.75 16 13 N -0.72 -7.75 5.46 -60.29 -0.33 -8.08 16 14 C 0.13 1.56 5.51 -4.04 -0.02 1.53 16 15 C -0.12 -1.64 3.63 -89.80 -0.33 -1.97 16 16 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 17 C -0.15 -2.13 7.39 -25.92 -0.19 -2.33 16 18 C 0.17 3.12 4.56 -67.12 -0.31 2.81 16 19 H 0.07 1.34 8.10 -51.93 -0.42 0.91 16 20 N -0.73 -16.50 5.12 -52.64 -0.27 -16.77 16 21 C -0.25 -6.78 10.45 -15.06 -0.16 -6.94 16 22 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 23 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 24 N -0.93 -28.72 13.97 55.49 0.78 -27.94 16 25 Si 0.88 21.45 27.74 -169.99 -4.71 16.74 16 26 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 28 H -0.28 -6.27 6.52 56.52 0.37 -5.90 16 29 C -0.17 -2.53 7.43 -25.92 -0.19 -2.73 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.53 7.83 -51.93 -0.41 0.13 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.10 1.18 5.65 -51.93 -0.29 0.89 16 35 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.52 7.68 -51.93 -0.40 0.12 16 41 H 0.40 3.70 7.97 -40.82 -0.33 3.38 16 42 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 43 H 0.07 0.86 7.84 -51.93 -0.41 0.45 16 44 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 46 H 0.36 8.00 5.76 -40.82 -0.24 7.76 16 47 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 48 H 0.07 1.00 7.90 -51.93 -0.41 0.59 16 49 H 0.07 1.15 8.14 -51.92 -0.42 0.72 16 LS Contribution 382.59 15.07 5.77 5.77 Total: -1.00 -31.63 382.59 -9.31 -40.95 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -8.82 Total: 9.13 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -1.45 Total: -7.99 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: 0.18 Total: -52.79 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -0.27 Total: -11.81 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.71 Total: 16.74 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.63 -9.31 -40.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086385236.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.437 kcal (2) G-P(sol) polarization free energy of solvation -31.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds