Wall clock time and date at job start Tue Mar 31 2020 10:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47257 * 2 1 4 4 H 1.08999 * 109.48964 * 54.96832 * 3 2 1 5 5 O 1.42912 * 109.53506 * 294.97637 * 3 2 1 6 6 C 1.42905 * 114.15302 * 178.92217 * 5 3 2 7 7 C 1.53098 * 109.41122 * 61.12569 * 6 5 3 8 8 C 1.53178 * 109.16230 * 302.38831 * 7 6 5 9 9 C 1.53095 * 109.48181 * 175.00200 * 3 2 1 10 10 H 1.08997 * 109.52218 * 57.62145 * 9 3 2 11 11 C 1.50698 * 109.51993 * 297.49409 * 9 3 2 12 12 O 1.21283 * 120.00472 * 0.13062 * 11 9 3 13 13 N 1.34777 * 119.99538 * 180.12400 * 11 9 3 14 14 C 1.46499 * 119.99665 * 179.72653 * 13 11 9 15 15 C 1.53004 * 109.47198 * 180.27868 * 14 13 11 16 16 H 1.09005 * 112.84860 * 43.80350 * 15 14 13 17 17 C 1.53785 * 113.61568 * 175.00089 * 15 14 13 18 18 C 1.53778 * 87.07976 * 139.98012 * 17 15 14 19 19 H 1.08998 * 113.61294 * 220.01591 * 18 17 15 20 20 N 1.46504 * 113.61304 * 89.20115 * 18 17 15 21 21 C 1.36935 * 119.99956 * 154.99909 * 20 18 17 22 22 H 1.08007 * 119.99860 * 359.97438 * 21 20 18 23 23 C 1.38810 * 119.99903 * 179.97438 * 21 20 18 24 24 N 1.31621 * 119.99765 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 120.00198 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47010 * 90.00026 * 25 23 21 27 27 H 1.48500 * 109.47166 * 209.99930 * 25 23 21 28 28 H 1.48497 * 109.46726 * 329.99765 * 25 23 21 29 29 C 1.53776 * 87.08288 * 334.56599 * 18 17 15 30 30 H 1.09005 * 109.46876 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46877 * 299.99870 * 1 2 3 32 32 H 1.08995 * 109.47505 * 60.00315 * 1 2 3 33 33 H 1.09002 * 109.47581 * 240.00157 * 2 1 3 34 34 H 1.08996 * 109.47508 * 120.00240 * 2 1 3 35 35 H 1.08995 * 109.48408 * 301.14443 * 6 5 3 36 36 H 1.09002 * 109.48353 * 181.10258 * 6 5 3 37 37 H 1.09004 * 109.52145 * 182.48569 * 7 6 5 38 38 H 1.08999 * 109.52477 * 62.29656 * 7 6 5 39 39 H 1.08997 * 109.54506 * 297.11368 * 8 7 6 40 40 H 1.08999 * 109.54134 * 176.84928 * 8 7 6 41 41 H 0.97001 * 120.00485 * 0.02562 * 13 11 9 42 42 H 1.09009 * 109.47454 * 300.27637 * 14 13 11 43 43 H 1.08998 * 109.47492 * 60.27932 * 14 13 11 44 44 H 1.08997 * 113.61329 * 254.53183 * 17 15 14 45 45 H 1.08996 * 113.61163 * 25.42941 * 17 15 14 46 46 H 0.96997 * 119.99825 * 334.99390 * 20 18 17 47 47 H 0.96998 * 120.00017 * 180.02562 * 24 23 21 48 48 H 1.08997 * 113.61844 * 270.88472 * 29 18 17 49 49 H 1.09007 * 113.61444 * 139.97790 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6051 1.9820 0.8414 5 8 1.6631 2.0826 -1.2209 6 6 2.0711 3.4490 -1.3149 7 6 3.5982 3.5301 -1.2427 8 6 4.0747 2.8880 0.0638 9 6 3.5658 1.4446 0.1257 10 1 3.9995 0.8700 -0.6927 11 6 3.9634 0.8264 1.4413 12 8 3.1113 0.4212 2.2033 13 7 5.2662 0.7237 1.7711 14 6 5.6526 0.1282 3.0526 15 6 7.1772 0.1388 3.1809 16 1 7.6220 1.0826 2.8653 17 6 7.6840 -0.3549 4.5463 18 6 8.8034 -1.0796 3.7806 19 1 9.0302 -2.0708 4.1733 20 7 10.0010 -0.2605 3.5775 21 6 11.2185 -0.8607 3.3970 22 1 11.2959 -1.9379 3.4047 23 6 12.3531 -0.0846 3.2041 24 7 13.5234 -0.6615 3.0311 25 14 12.2192 1.7786 3.1915 26 1 12.4017 2.2973 4.5710 27 1 13.2693 2.3444 2.3070 28 1 10.8802 2.1752 2.6866 29 6 7.8554 -1.0988 2.5700 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.6377 4.0153 -0.4907 36 1 1.7294 3.8661 -2.2622 37 1 3.9092 4.5745 -1.2698 38 1 4.0317 2.9979 -2.0894 39 1 3.6814 3.4500 0.9109 40 1 5.1642 2.8922 0.0960 41 1 5.9478 1.0480 1.1619 42 1 5.2154 0.7049 3.8678 43 1 5.2912 -0.8990 3.0997 44 1 8.0444 0.4447 5.1934 45 1 6.9924 -1.0296 5.0507 46 1 9.9314 0.7069 3.5709 47 1 14.3163 -0.1191 2.8967 48 1 7.2107 -1.9769 2.5341 49 1 8.3543 -0.8997 1.6214 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086385236.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:11 Heat of formation + Delta-G solvation = -90.159490 kcal Electronic energy + Delta-G solvation = -26236.931415 eV Core-core repulsion = 22584.279358 eV Total energy + Delta-G solvation = -3652.652056 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.63041 -40.32522 -39.40243 -36.17026 -35.25081 -34.68156 -34.58419 -32.65433 -31.14441 -28.83947 -26.46612 -26.32500 -25.75410 -24.90520 -23.14258 -22.30250 -22.04010 -21.05006 -20.11544 -19.56551 -18.40902 -17.61997 -16.97756 -16.75509 -16.50482 -16.37818 -16.10274 -15.65505 -15.53527 -15.10589 -14.96241 -14.72125 -14.61062 -14.47054 -14.25219 -13.90805 -13.79759 -13.36373 -13.13676 -13.09579 -13.01914 -12.70067 -12.67550 -12.30371 -12.19040 -12.16899 -11.89136 -11.86331 -11.76054 -11.62996 -11.53049 -11.23616 -10.99037 -10.90917 -10.70125 -10.37256 -10.04472 -9.30112 -8.02967 -5.36841 1.36594 1.41588 1.48555 1.57317 2.12557 2.47911 2.85246 3.27264 3.49151 3.51007 3.64710 3.68093 3.73960 3.83630 3.98098 4.00753 4.11834 4.16380 4.23231 4.27494 4.35939 4.37646 4.50167 4.53376 4.70337 4.71364 4.77542 4.80732 4.86527 4.91523 4.92684 4.97314 4.98804 5.06361 5.08985 5.13086 5.22527 5.26428 5.30384 5.32238 5.43007 5.52274 5.55453 5.80500 6.22338 6.25636 6.51195 7.07544 7.20163 7.84226 8.03026 9.18580 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.019890 B = 0.002705 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.405011 B =10347.895929 C =11266.792138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.125 4.125 3 C 0.117 3.883 4 H 0.052 0.948 5 O -0.388 6.388 6 C 0.050 3.950 7 C -0.150 4.150 8 C -0.114 4.114 9 C -0.135 4.135 10 H 0.114 0.886 11 C 0.519 3.481 12 O -0.572 6.572 13 N -0.716 5.716 14 C 0.139 3.861 15 C -0.104 4.104 16 H 0.090 0.910 17 C -0.133 4.133 18 C 0.145 3.855 19 H 0.056 0.944 20 N -0.733 5.733 21 C -0.233 4.233 22 H 0.055 0.945 23 C -0.066 4.066 24 N -0.985 5.985 25 Si 0.957 3.043 26 H -0.280 1.280 27 H -0.297 1.297 28 H -0.247 1.247 29 C -0.155 4.155 30 H 0.060 0.940 31 H 0.047 0.953 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.052 0.948 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.087 0.913 41 H 0.411 0.589 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.106 0.894 46 H 0.367 0.633 47 H 0.258 0.742 48 H 0.090 0.910 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.400 9.454 -8.026 29.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.162 4.162 3 C 0.059 3.941 4 H 0.070 0.930 5 O -0.307 6.307 6 C -0.026 4.026 7 C -0.187 4.187 8 C -0.151 4.151 9 C -0.156 4.156 10 H 0.132 0.868 11 C 0.306 3.694 12 O -0.452 6.452 13 N -0.367 5.367 14 C 0.015 3.985 15 C -0.123 4.123 16 H 0.108 0.892 17 C -0.173 4.173 18 C 0.035 3.965 19 H 0.074 0.926 20 N -0.375 5.375 21 C -0.364 4.364 22 H 0.073 0.927 23 C -0.258 4.258 24 N -0.635 5.635 25 Si 0.784 3.216 26 H -0.206 1.206 27 H -0.224 1.224 28 H -0.171 1.171 29 C -0.195 4.195 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.129 0.871 37 H 0.114 0.886 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.105 0.895 41 H 0.247 0.753 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.124 0.876 46 H 0.201 0.799 47 H 0.067 0.933 48 H 0.108 0.892 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -26.929 8.891 -7.631 29.368 hybrid contribution 1.209 1.013 -0.032 1.578 sum -25.720 9.904 -7.662 28.607 Atomic orbital electron populations 1.21629 0.94778 1.01842 1.01634 1.21727 0.97405 0.94203 1.02890 1.21730 0.91013 0.94655 0.86684 0.93047 1.87937 1.78532 1.25853 1.38424 1.22815 0.94436 0.82233 1.03155 1.22181 0.96347 1.02820 0.97369 1.21631 1.02165 0.92255 0.99096 1.21993 0.98822 0.99226 0.95571 0.86819 1.20704 0.82323 0.78046 0.88279 1.90655 1.50624 1.50435 1.53460 1.46020 1.07363 1.62030 1.21316 1.21305 0.93627 0.98391 0.85138 1.22572 0.93030 0.98740 0.97964 0.89187 1.23360 0.97537 1.00622 0.95747 1.21342 0.85195 0.94322 0.95619 0.92582 1.42423 1.03412 1.04433 1.87236 1.19061 0.85114 0.92280 1.39903 0.92660 1.25544 0.94790 1.02946 1.02479 1.69891 0.99139 1.36342 1.58148 0.85382 0.78073 0.80432 0.77706 1.20602 1.22390 1.17137 1.23708 0.98798 0.97899 0.99120 0.92133 0.93342 0.92308 0.91586 0.89995 0.92963 0.87134 0.88630 0.90451 0.91635 0.89466 0.75300 0.91626 0.91589 0.91397 0.87607 0.79934 0.93339 0.89163 0.92901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.81 71.98 0.71 -1.85 16 2 C -0.12 -2.51 5.41 30.59 0.17 -2.35 16 3 C 0.12 2.25 1.78 30.63 0.05 2.30 16 4 H 0.05 1.11 8.04 -2.39 -0.02 1.09 16 5 O -0.39 -7.08 9.95 -148.98 -1.48 -8.56 16 6 C 0.05 0.62 6.85 72.01 0.49 1.11 16 7 C -0.15 -1.54 6.14 30.69 0.19 -1.35 16 8 C -0.11 -1.44 5.18 30.71 0.16 -1.28 16 9 C -0.13 -2.24 2.23 -11.45 -0.03 -2.27 16 10 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 11 C 0.52 11.05 6.84 87.66 0.60 11.65 16 12 O -0.57 -16.02 13.84 -3.04 -0.04 -16.07 16 13 N -0.72 -13.55 5.46 -463.05 -2.53 -16.08 16 14 C 0.14 2.92 5.51 86.38 0.48 3.40 16 15 C -0.10 -2.46 3.63 -10.26 -0.04 -2.49 16 16 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 17 C -0.13 -3.47 7.39 31.12 0.23 -3.24 16 18 C 0.14 5.07 4.56 45.51 0.21 5.27 16 19 H 0.06 2.11 8.10 -2.39 -0.02 2.09 16 20 N -0.73 -32.48 5.12 -320.45 -1.64 -34.12 16 21 C -0.23 -12.96 10.45 84.03 0.88 -12.08 16 22 H 0.06 3.41 8.06 -2.91 -0.02 3.38 16 23 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 24 N -0.98 -62.50 13.97 21.65 0.30 -62.19 16 25 Si 0.96 43.99 27.74 68.60 1.90 45.89 16 26 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 27 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 28 H -0.25 -9.94 6.52 99.48 0.65 -9.29 16 29 C -0.15 -4.41 7.43 31.12 0.23 -4.18 16 30 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 1.04 7.83 -2.39 -0.02 1.02 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.08 1.95 5.65 -2.39 -0.01 1.93 16 35 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 38 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.09 0.91 7.68 -2.39 -0.02 0.89 16 41 H 0.41 6.32 7.97 -92.71 -0.74 5.58 16 42 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 43 H 0.07 1.47 7.84 -2.39 -0.02 1.45 16 44 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.11 2.29 8.10 -2.39 -0.02 2.27 16 46 H 0.37 15.37 5.76 -92.71 -0.53 14.84 16 47 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 48 H 0.09 2.27 7.90 -2.39 -0.02 2.25 16 49 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 Total: -1.00 -69.88 382.59 0.90 -68.98 By element: Atomic # 1 Polarization: 33.27 SS G_CDS: -0.40 Total: 32.87 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: 4.79 Total: -10.73 kcal Atomic # 7 Polarization: -108.52 SS G_CDS: -3.87 Total: -112.39 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -1.52 Total: -24.62 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.90 Total: 45.89 kcal Total: -69.88 0.90 -68.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086385236.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.182 kcal (2) G-P(sol) polarization free energy of solvation -69.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds