Wall clock time and date at job start Tue Mar 31 2020 10:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42906 * 109.46894 * 2 1 4 4 C 1.42894 * 113.99706 * 180.02562 * 3 2 1 5 5 C 1.53777 * 113.61536 * 209.99982 * 4 3 2 6 6 C 1.53778 * 87.08469 * 219.93360 * 5 4 3 7 7 C 1.50701 * 113.61507 * 139.97851 * 6 5 4 8 8 O 1.21281 * 120.00066 * 1.52677 * 7 6 5 9 9 N 1.34779 * 119.99816 * 181.53218 * 7 6 5 10 10 C 1.46501 * 119.99800 * 180.02562 * 9 7 6 11 11 H 1.08999 * 110.78089 * 328.23300 * 10 9 7 12 12 C 1.55154 * 110.72003 * 91.47636 * 10 9 7 13 13 C 1.54694 * 101.67635 * 153.69695 * 12 10 9 14 14 N 1.47420 * 104.94318 * 323.27888 * 13 12 10 15 15 C 1.36940 * 125.64941 * 204.07436 * 14 13 12 16 16 H 1.07999 * 119.99687 * 153.74158 * 15 14 13 17 17 C 1.38811 * 119.99986 * 333.73554 * 15 14 13 18 18 N 1.31620 * 119.99763 * 335.02588 * 17 15 14 19 19 Si 1.86801 * 119.99987 * 155.01780 * 17 15 14 20 20 H 1.48502 * 109.46690 * 60.00891 * 19 17 15 21 21 H 1.48494 * 109.47178 * 300.00655 * 19 17 15 22 22 H 1.48499 * 109.46863 * 180.02562 * 19 17 15 23 23 C 1.47029 * 108.70437 * 23.80627 * 14 13 12 24 24 H 1.08992 * 109.88561 * 239.59946 * 23 14 13 25 25 C 1.53001 * 109.87935 * 118.58601 * 23 14 13 26 26 C 1.52998 * 109.47363 * 65.67836 * 25 23 14 27 27 C 1.53782 * 87.17212 * 25.39035 * 6 5 4 28 28 H 1.08999 * 109.47278 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46927 * 300.00004 * 1 2 3 30 30 H 1.08997 * 109.47551 * 59.99772 * 1 2 3 31 31 H 1.08996 * 109.46754 * 240.00057 * 2 1 3 32 32 H 1.08997 * 109.47191 * 119.99824 * 2 1 3 33 33 H 1.09004 * 112.84995 * 341.19130 * 4 3 2 34 34 H 1.08999 * 113.61892 * 105.38450 * 5 4 3 35 35 H 1.09004 * 113.61145 * 334.48418 * 5 4 3 36 36 H 1.08993 * 113.61607 * 270.80236 * 6 5 4 37 37 H 0.96997 * 119.99792 * 0.02562 * 9 7 6 38 38 H 1.08998 * 111.00229 * 271.93650 * 12 10 9 39 39 H 1.08997 * 111.00429 * 35.75282 * 12 10 9 40 40 H 1.09000 * 110.39260 * 204.36380 * 13 12 10 41 41 H 1.09004 * 110.23313 * 82.11438 * 13 12 10 42 42 H 0.96992 * 120.00416 * 353.73167 * 18 17 15 43 43 H 1.09000 * 109.46767 * 185.67390 * 25 23 14 44 44 H 1.09002 * 109.47335 * 305.67063 * 25 23 14 45 45 H 1.08997 * 109.47204 * 171.71779 * 26 25 23 46 46 H 1.09007 * 109.46647 * 291.71533 * 26 25 23 47 47 H 1.08998 * 109.47177 * 51.70949 * 26 25 23 48 48 H 1.09000 * 113.61923 * 89.15948 * 27 6 5 49 49 H 1.08998 * 113.61851 * 220.06547 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.9489 2.7251 0.7039 6 6 4.9910 2.8302 -0.4220 7 6 5.2301 4.2415 -0.8936 8 8 4.6427 5.1638 -0.3689 9 7 6.0964 4.4785 -1.8984 10 6 6.3292 5.8505 -2.3564 11 1 5.4286 6.4540 -2.2435 12 6 7.5182 6.4902 -1.5919 13 6 8.0188 7.5391 -2.6128 14 7 7.8520 6.8977 -3.9296 15 6 8.5521 7.2105 -5.0642 16 1 8.6913 6.4670 -5.8351 17 6 9.0829 8.4832 -5.2235 18 7 8.5450 9.5044 -4.5909 19 14 10.5606 8.7465 -6.3355 20 1 10.2212 8.3238 -7.7180 21 1 11.7042 7.9405 -5.8380 22 1 10.9312 10.1845 -6.3339 23 6 6.8139 5.8621 -3.8216 24 1 7.2313 4.8900 -4.0840 25 6 5.6470 6.1959 -4.7531 26 6 6.1172 6.1198 -6.2071 27 6 4.0059 2.0447 -1.3036 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.9280 0.5456 0.3229 34 1 4.3836 2.5318 1.6846 35 1 3.2309 3.5453 0.7123 36 1 5.9152 2.2915 -0.2132 37 1 6.5658 3.7408 -2.3182 38 1 7.1798 6.9678 -0.6725 39 1 8.2919 5.7512 -1.3840 40 1 9.0687 7.7717 -2.4344 41 1 7.4133 8.4434 -2.5518 42 1 7.7251 9.3853 -4.0866 43 1 4.8396 5.4810 -4.5945 44 1 5.2880 7.2027 -4.5395 45 1 5.2584 6.2118 -6.8720 46 1 6.8184 6.9306 -6.4050 47 1 6.6099 5.1631 -6.3800 48 1 3.3035 2.6784 -1.8452 49 1 4.4864 1.3027 -1.9413 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087562110.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:52 Heat of formation + Delta-G solvation = -52.563840 kcal Electronic energy + Delta-G solvation = -26509.722304 eV Core-core repulsion = 22858.700517 eV Total energy + Delta-G solvation = -3651.021787 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.49999 -38.96302 -37.79951 -36.16391 -34.18367 -32.57037 -31.93035 -31.28285 -28.73567 -27.22104 -25.95881 -25.79630 -24.18745 -23.13628 -21.89587 -21.16297 -20.26463 -19.88104 -19.26193 -17.84216 -17.34507 -16.39945 -16.17041 -15.87191 -15.74252 -14.80196 -14.46098 -14.16579 -14.03998 -13.65523 -13.45535 -13.25362 -13.00029 -12.91244 -12.85486 -12.65104 -12.40657 -12.16234 -11.79779 -11.76406 -11.61099 -11.36076 -11.10462 -11.07962 -10.96118 -10.85096 -10.75117 -10.47742 -10.22725 -10.12030 -10.03726 -9.83597 -9.74798 -9.54191 -9.41922 -8.69710 -8.39509 -6.89903 -6.04788 -3.21811 2.72560 3.18183 3.48265 3.51474 3.56805 3.69879 4.19454 4.30908 4.48303 4.54107 4.57885 4.73484 4.83175 4.94339 5.01762 5.06495 5.20096 5.31074 5.34495 5.38021 5.44598 5.44941 5.54173 5.56887 5.71884 5.72694 5.76280 5.82573 5.93582 5.98824 6.04900 6.09669 6.16966 6.30792 6.41888 6.51792 6.58612 6.68784 6.81075 6.95156 6.99752 7.06262 7.12411 7.33956 7.69985 7.87322 8.39048 8.49887 9.02549 9.79821 10.38688 11.23026 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.029240 B = 0.002653 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.376370 B =10551.933551 C =11019.604416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.372 6.372 4 C 0.063 3.937 5 C -0.112 4.112 6 C -0.138 4.138 7 C 0.524 3.476 8 O -0.540 6.540 9 N -0.714 5.714 10 C 0.134 3.866 11 H 0.094 0.906 12 C -0.144 4.144 13 C 0.143 3.857 14 N -0.590 5.590 15 C -0.325 4.325 16 H 0.063 0.937 17 C -0.024 4.024 18 N -0.913 5.913 19 Si 1.064 2.936 20 H -0.293 1.293 21 H -0.294 1.294 22 H -0.286 1.286 23 C 0.157 3.843 24 H 0.036 0.964 25 C -0.122 4.122 26 C -0.149 4.149 27 C -0.138 4.138 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.114 0.886 37 H 0.398 0.602 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.050 0.950 41 H 0.029 0.971 42 H 0.270 0.730 43 H 0.038 0.962 44 H 0.055 0.945 45 H 0.028 0.972 46 H 0.092 0.908 47 H 0.037 0.963 48 H 0.095 0.905 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.647 -19.719 8.489 23.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.022 4.022 3 O -0.291 6.291 4 C 0.005 3.995 5 C -0.150 4.150 6 C -0.159 4.159 7 C 0.310 3.690 8 O -0.417 6.417 9 N -0.364 5.364 10 C 0.029 3.971 11 H 0.112 0.888 12 C -0.184 4.184 13 C 0.018 3.982 14 N -0.316 5.316 15 C -0.453 4.453 16 H 0.080 0.920 17 C -0.227 4.227 18 N -0.553 5.553 19 Si 0.894 3.106 20 H -0.220 1.220 21 H -0.221 1.221 22 H -0.211 1.211 23 C 0.049 3.951 24 H 0.053 0.947 25 C -0.161 4.161 26 C -0.206 4.206 27 C -0.176 4.176 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.123 0.877 36 H 0.132 0.868 37 H 0.232 0.768 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.047 0.953 42 H 0.082 0.918 43 H 0.056 0.944 44 H 0.074 0.926 45 H 0.048 0.952 46 H 0.110 0.890 47 H 0.057 0.943 48 H 0.114 0.886 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.040 -17.716 8.233 21.526 hybrid contribution -0.673 -1.795 0.228 1.930 sum -9.712 -19.511 8.461 23.380 Atomic orbital electron populations 1.21754 0.93818 1.02160 1.03269 1.22517 0.95676 0.84090 0.99900 1.88003 1.20462 1.26109 1.94505 1.23686 0.81275 0.98020 0.96525 1.23101 0.96994 0.97987 0.96886 1.22492 0.99530 0.94355 0.99521 1.20234 0.78719 0.90433 0.79647 1.90694 1.48990 1.45641 1.56393 1.46045 1.44264 1.09664 1.36385 1.22098 0.98678 0.81709 0.94609 0.88795 1.23152 0.97215 0.99529 0.98484 1.21502 0.99067 0.93431 0.84249 1.44482 1.39860 1.41417 1.05843 1.19589 1.30887 0.97017 0.97854 0.91968 1.25836 1.04055 0.90865 1.01981 1.70752 1.20602 1.30717 1.33187 0.83533 0.76009 0.75857 0.75199 1.21964 1.22124 1.21139 1.21197 0.89521 0.94034 0.90333 0.94653 1.21870 0.97159 1.00343 0.96767 1.21889 1.00592 1.02966 0.95112 1.23463 0.97623 0.99365 0.97145 0.91203 0.91828 0.91773 0.93399 0.93444 0.89308 0.90525 0.87650 0.86794 0.76783 0.91667 0.91703 0.93197 0.95276 0.91838 0.94353 0.92612 0.95246 0.88973 0.94342 0.88637 0.90417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 10.28 37.16 0.38 -0.63 16 2 C 0.05 0.41 6.50 37.16 0.24 0.65 16 3 O -0.37 -3.91 10.36 -35.23 -0.36 -4.28 16 4 C 0.06 0.56 4.31 -25.83 -0.11 0.45 16 5 C -0.11 -1.16 7.23 -25.92 -0.19 -1.35 16 6 C -0.14 -1.40 4.14 -90.96 -0.38 -1.77 16 7 C 0.52 7.59 7.35 -10.98 -0.08 7.51 16 8 O -0.54 -10.07 15.56 5.56 0.09 -9.98 16 9 N -0.71 -10.21 5.18 -52.03 -0.27 -10.48 16 10 C 0.13 2.41 2.85 -66.10 -0.19 2.22 16 11 H 0.09 1.87 7.26 -51.93 -0.38 1.50 16 12 C -0.14 -2.71 6.76 -24.70 -0.17 -2.88 16 13 C 0.14 3.30 5.56 -2.65 -0.01 3.28 16 14 N -0.59 -14.17 2.92 -162.70 -0.48 -14.64 16 15 C -0.33 -8.61 7.23 -15.06 -0.11 -8.72 16 16 H 0.06 1.65 7.23 -52.49 -0.38 1.27 16 17 C -0.02 -0.67 5.18 -17.43 -0.09 -0.77 16 18 N -0.91 -27.02 13.06 55.49 0.72 -26.29 16 19 Si 1.06 24.82 29.99 -169.99 -5.10 19.72 16 20 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 C 0.16 3.12 3.00 -66.95 -0.20 2.92 16 24 H 0.04 0.70 7.72 -51.93 -0.40 0.29 16 25 C -0.12 -2.39 5.46 -26.73 -0.15 -2.53 16 26 C -0.15 -2.93 8.97 37.16 0.33 -2.60 16 27 C -0.14 -1.28 7.48 -25.82 -0.19 -1.47 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.09 0.59 7.87 -51.93 -0.41 0.18 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.11 1.38 7.45 -51.93 -0.39 0.99 16 36 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.40 4.70 8.37 -40.82 -0.34 4.36 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.03 0.73 6.73 -51.93 -0.35 0.38 16 42 H 0.27 8.08 6.19 -40.82 -0.25 7.82 16 43 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.09 2.14 5.53 -51.93 -0.29 1.85 16 47 H 0.04 0.71 8.13 -51.93 -0.42 0.29 16 48 H 0.10 1.08 8.09 -51.93 -0.42 0.66 16 49 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 385.23 15.07 5.81 5.81 Total: -1.00 -31.78 385.23 -9.24 -41.02 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -8.74 Total: 4.81 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -0.91 Total: -5.69 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: -0.02 Total: -51.41 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.28 Total: -14.26 kcal Atomic # 14 Polarization: 24.82 SS G_CDS: -5.10 Total: 19.72 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.78 -9.24 -41.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087562110.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.546 kcal (2) G-P(sol) polarization free energy of solvation -31.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds