Wall clock time and date at job start Tue Mar 31 2020 10:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42906 * 109.46894 * 2 1 4 4 C 1.42894 * 113.99706 * 180.02562 * 3 2 1 5 5 C 1.53777 * 113.61536 * 209.99982 * 4 3 2 6 6 C 1.53778 * 87.08469 * 219.93360 * 5 4 3 7 7 C 1.50701 * 113.61507 * 139.97851 * 6 5 4 8 8 O 1.21281 * 120.00066 * 1.52677 * 7 6 5 9 9 N 1.34779 * 119.99816 * 181.53218 * 7 6 5 10 10 C 1.46501 * 119.99800 * 180.02562 * 9 7 6 11 11 H 1.08999 * 110.78089 * 328.23300 * 10 9 7 12 12 C 1.55154 * 110.72003 * 91.47636 * 10 9 7 13 13 C 1.54694 * 101.67635 * 153.69695 * 12 10 9 14 14 N 1.47420 * 104.94318 * 323.27888 * 13 12 10 15 15 C 1.36940 * 125.64941 * 204.07436 * 14 13 12 16 16 H 1.07999 * 119.99687 * 153.74158 * 15 14 13 17 17 C 1.38811 * 119.99986 * 333.73554 * 15 14 13 18 18 N 1.31620 * 119.99763 * 335.02588 * 17 15 14 19 19 Si 1.86801 * 119.99987 * 155.01780 * 17 15 14 20 20 H 1.48502 * 109.46690 * 60.00891 * 19 17 15 21 21 H 1.48494 * 109.47178 * 300.00655 * 19 17 15 22 22 H 1.48499 * 109.46863 * 180.02562 * 19 17 15 23 23 C 1.47029 * 108.70437 * 23.80627 * 14 13 12 24 24 H 1.08992 * 109.88561 * 239.59946 * 23 14 13 25 25 C 1.53001 * 109.87935 * 118.58601 * 23 14 13 26 26 C 1.52998 * 109.47363 * 65.67836 * 25 23 14 27 27 C 1.53782 * 87.17212 * 25.39035 * 6 5 4 28 28 H 1.08999 * 109.47278 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46927 * 300.00004 * 1 2 3 30 30 H 1.08997 * 109.47551 * 59.99772 * 1 2 3 31 31 H 1.08996 * 109.46754 * 240.00057 * 2 1 3 32 32 H 1.08997 * 109.47191 * 119.99824 * 2 1 3 33 33 H 1.09004 * 112.84995 * 341.19130 * 4 3 2 34 34 H 1.08999 * 113.61892 * 105.38450 * 5 4 3 35 35 H 1.09004 * 113.61145 * 334.48418 * 5 4 3 36 36 H 1.08993 * 113.61607 * 270.80236 * 6 5 4 37 37 H 0.96997 * 119.99792 * 0.02562 * 9 7 6 38 38 H 1.08998 * 111.00229 * 271.93650 * 12 10 9 39 39 H 1.08997 * 111.00429 * 35.75282 * 12 10 9 40 40 H 1.09000 * 110.39260 * 204.36380 * 13 12 10 41 41 H 1.09004 * 110.23313 * 82.11438 * 13 12 10 42 42 H 0.96992 * 120.00416 * 353.73167 * 18 17 15 43 43 H 1.09000 * 109.46767 * 185.67390 * 25 23 14 44 44 H 1.09002 * 109.47335 * 305.67063 * 25 23 14 45 45 H 1.08997 * 109.47204 * 171.71779 * 26 25 23 46 46 H 1.09007 * 109.46647 * 291.71533 * 26 25 23 47 47 H 1.08998 * 109.47177 * 51.70949 * 26 25 23 48 48 H 1.09000 * 113.61923 * 89.15948 * 27 6 5 49 49 H 1.08998 * 113.61851 * 220.06547 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.9489 2.7251 0.7039 6 6 4.9910 2.8302 -0.4220 7 6 5.2301 4.2415 -0.8936 8 8 4.6427 5.1638 -0.3689 9 7 6.0964 4.4785 -1.8984 10 6 6.3292 5.8505 -2.3564 11 1 5.4286 6.4540 -2.2435 12 6 7.5182 6.4902 -1.5919 13 6 8.0188 7.5391 -2.6128 14 7 7.8520 6.8977 -3.9296 15 6 8.5521 7.2105 -5.0642 16 1 8.6913 6.4670 -5.8351 17 6 9.0829 8.4832 -5.2235 18 7 8.5450 9.5044 -4.5909 19 14 10.5606 8.7465 -6.3355 20 1 10.2212 8.3238 -7.7180 21 1 11.7042 7.9405 -5.8380 22 1 10.9312 10.1845 -6.3339 23 6 6.8139 5.8621 -3.8216 24 1 7.2313 4.8900 -4.0840 25 6 5.6470 6.1959 -4.7531 26 6 6.1172 6.1198 -6.2071 27 6 4.0059 2.0447 -1.3036 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.9280 0.5456 0.3229 34 1 4.3836 2.5318 1.6846 35 1 3.2309 3.5453 0.7123 36 1 5.9152 2.2915 -0.2132 37 1 6.5658 3.7408 -2.3182 38 1 7.1798 6.9678 -0.6725 39 1 8.2919 5.7512 -1.3840 40 1 9.0687 7.7717 -2.4344 41 1 7.4133 8.4434 -2.5518 42 1 7.7251 9.3853 -4.0866 43 1 4.8396 5.4810 -4.5945 44 1 5.2880 7.2027 -4.5395 45 1 5.2584 6.2118 -6.8720 46 1 6.8184 6.9306 -6.4050 47 1 6.6099 5.1631 -6.3800 48 1 3.3035 2.6784 -1.8452 49 1 4.4864 1.3027 -1.9413 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087562110.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:51 Heat of formation + Delta-G solvation = -72.959587 kcal Electronic energy + Delta-G solvation = -26510.606730 eV Core-core repulsion = 22858.700517 eV Total energy + Delta-G solvation = -3651.906213 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.54623 -40.18683 -39.09549 -36.98266 -35.75582 -34.30247 -33.64166 -31.87176 -30.53559 -28.74970 -27.05987 -26.70033 -25.87861 -23.71273 -23.54599 -22.43156 -21.72157 -21.35640 -20.36901 -19.32481 -18.75577 -17.67282 -17.13572 -16.63957 -16.54411 -16.14611 -16.08362 -15.60414 -15.39332 -15.14104 -15.01668 -14.65654 -14.30340 -14.06202 -13.88145 -13.66879 -13.46403 -13.40087 -13.36402 -12.85334 -12.69527 -12.54075 -12.45048 -12.40895 -12.19220 -12.05148 -11.92290 -11.85216 -11.80121 -11.74403 -11.59576 -11.54887 -11.38720 -10.80532 -10.44000 -10.34439 -10.06083 -8.92915 -8.18192 -5.33143 1.59040 1.59845 1.67347 1.84988 2.08265 2.67953 2.85266 3.26122 3.41236 3.45754 3.55655 3.74354 3.75754 3.77937 3.87246 4.06629 4.11622 4.22830 4.25640 4.31789 4.37219 4.44962 4.48744 4.54026 4.54624 4.65925 4.72163 4.79692 4.86474 4.87664 4.92037 4.98092 4.98952 5.04258 5.05388 5.08646 5.14499 5.22293 5.22835 5.31666 5.34806 5.56997 5.62792 5.83698 6.38534 6.40221 6.56839 6.95503 7.25966 7.74725 8.36290 9.07922 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.029240 B = 0.002653 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.376370 B =10551.933551 C =11019.604416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.048 3.952 3 O -0.402 6.402 4 C 0.070 3.930 5 C -0.122 4.122 6 C -0.126 4.126 7 C 0.521 3.479 8 O -0.587 6.587 9 N -0.701 5.701 10 C 0.149 3.851 11 H 0.070 0.930 12 C -0.128 4.128 13 C 0.147 3.853 14 N -0.607 5.607 15 C -0.312 4.312 16 H 0.066 0.934 17 C -0.083 4.083 18 N -0.949 5.949 19 Si 1.112 2.888 20 H -0.273 1.273 21 H -0.280 1.280 22 H -0.299 1.299 23 C 0.156 3.844 24 H 0.055 0.945 25 C -0.118 4.118 26 C -0.141 4.141 27 C -0.134 4.134 28 H 0.091 0.909 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.123 0.877 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.154 0.846 37 H 0.416 0.584 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.026 0.974 41 H -0.001 1.001 42 H 0.253 0.747 43 H 0.066 0.934 44 H 0.025 0.975 45 H 0.049 0.951 46 H 0.052 0.948 47 H 0.053 0.947 48 H 0.068 0.932 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.162 -23.876 8.398 26.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.028 4.028 3 O -0.322 6.322 4 C 0.012 3.988 5 C -0.160 4.160 6 C -0.147 4.147 7 C 0.309 3.691 8 O -0.467 6.467 9 N -0.352 5.352 10 C 0.043 3.957 11 H 0.089 0.911 12 C -0.167 4.167 13 C 0.021 3.979 14 N -0.333 5.333 15 C -0.441 4.441 16 H 0.083 0.917 17 C -0.279 4.279 18 N -0.592 5.592 19 Si 0.937 3.063 20 H -0.199 1.199 21 H -0.206 1.206 22 H -0.226 1.226 23 C 0.049 3.951 24 H 0.073 0.927 25 C -0.158 4.158 26 C -0.199 4.199 27 C -0.172 4.172 28 H 0.109 0.891 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.141 0.859 34 H 0.111 0.889 35 H 0.087 0.913 36 H 0.171 0.829 37 H 0.253 0.747 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.044 0.956 41 H 0.017 0.983 42 H 0.063 0.937 43 H 0.084 0.916 44 H 0.044 0.956 45 H 0.068 0.932 46 H 0.071 0.929 47 H 0.072 0.928 48 H 0.087 0.913 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.562 -21.951 8.129 24.925 hybrid contribution -0.938 -0.555 0.280 1.125 sum -9.500 -22.506 8.410 25.836 Atomic orbital electron populations 1.21793 0.93729 1.03271 1.02316 1.22725 0.95901 0.82965 1.01201 1.87980 1.21458 1.28142 1.94600 1.23758 0.80960 0.98420 0.95613 1.23110 0.96727 0.97946 0.98191 1.22597 1.01251 0.91430 0.99398 1.21082 0.77394 0.91934 0.78675 1.90687 1.50569 1.47657 1.57822 1.45846 1.44512 1.08388 1.36485 1.21640 0.97115 0.83649 0.93325 0.91134 1.22998 0.97847 0.98570 0.97297 1.21338 0.97204 0.93814 0.85514 1.44710 1.41163 1.41799 1.05580 1.19803 1.29597 0.96583 0.98118 0.91658 1.27119 1.06400 0.91086 1.03303 1.70875 1.20903 1.31764 1.35682 0.82888 0.73573 0.75118 0.74703 1.19898 1.20591 1.22553 1.21331 0.88744 0.93332 0.91673 0.92694 1.21813 0.97781 0.99401 0.96769 1.21762 1.00587 1.02077 0.95430 1.23438 0.96892 0.99345 0.97572 0.89063 0.92648 0.92874 0.92183 0.91888 0.85909 0.88931 0.91349 0.82889 0.74713 0.91310 0.89839 0.95558 0.98303 0.93691 0.91551 0.95571 0.93234 0.92884 0.92778 0.91326 0.87422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 10.28 71.98 0.74 -1.06 16 2 C 0.05 0.60 6.50 71.98 0.47 1.07 16 3 O -0.40 -7.79 10.36 -148.98 -1.54 -9.33 16 4 C 0.07 1.04 4.31 31.18 0.13 1.17 16 5 C -0.12 -2.32 7.23 31.12 0.22 -2.09 16 6 C -0.13 -2.16 4.14 -11.01 -0.05 -2.20 16 7 C 0.52 14.24 7.35 87.66 0.64 14.88 16 8 O -0.59 -22.03 15.56 -3.03 -0.05 -22.08 16 9 N -0.70 -18.38 5.18 -436.91 -2.26 -20.64 16 10 C 0.15 5.25 2.85 46.18 0.13 5.38 16 11 H 0.07 2.87 7.26 -2.39 -0.02 2.85 16 12 C -0.13 -4.76 6.76 31.91 0.22 -4.54 16 13 C 0.15 7.02 5.56 86.78 0.48 7.51 16 14 N -0.61 -29.42 2.92 -668.68 -1.95 -31.37 16 15 C -0.31 -16.62 7.23 84.03 0.61 -16.01 16 16 H 0.07 3.41 7.23 -2.91 -0.02 3.39 16 17 C -0.08 -4.68 5.18 84.86 0.44 -4.24 16 18 N -0.95 -58.62 13.06 21.65 0.28 -58.34 16 19 Si 1.11 50.58 29.99 68.60 2.06 52.63 16 20 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 21 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 22 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 23 C 0.16 6.04 3.00 45.34 0.14 6.17 16 24 H 0.06 1.97 7.72 -2.39 -0.02 1.95 16 25 C -0.12 -4.55 5.46 30.59 0.17 -4.38 16 26 C -0.14 -5.39 8.97 71.98 0.65 -4.75 16 27 C -0.13 -2.07 7.48 31.18 0.23 -1.84 16 28 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.12 1.00 7.87 -2.39 -0.02 0.98 16 34 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.07 1.83 7.45 -2.38 -0.02 1.81 16 36 H 0.15 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.42 8.16 8.37 -92.71 -0.78 7.39 16 38 H 0.07 2.52 8.14 -2.39 -0.02 2.51 16 39 H 0.08 2.81 8.14 -2.39 -0.02 2.80 16 40 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.00 -0.04 6.73 -2.38 -0.02 -0.06 16 42 H 0.25 16.05 6.19 -92.71 -0.57 15.47 16 43 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.05 2.45 5.53 -2.38 -0.01 2.44 16 47 H 0.05 1.87 8.13 -2.39 -0.02 1.85 16 48 H 0.07 1.45 8.09 -2.39 -0.02 1.43 16 49 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -73.43 385.23 2.10 -71.34 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: 0.34 Total: 22.73 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: 5.22 Total: -4.94 kcal Atomic # 7 Polarization: -106.42 SS G_CDS: -3.93 Total: -110.35 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -1.59 Total: -31.41 kcal Atomic # 14 Polarization: 50.58 SS G_CDS: 2.06 Total: 52.63 kcal Total: -73.43 2.10 -71.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087562110.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.621 kcal (2) G-P(sol) polarization free energy of solvation -73.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds