Wall clock time and date at job start Tue Mar 31 2020 10:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47125 * 2 1 4 4 C 1.50693 * 109.47080 * 180.02562 * 3 2 1 5 5 O 1.21278 * 120.00110 * 359.97438 * 4 3 2 6 6 N 1.34781 * 120.00227 * 180.27825 * 4 3 2 7 7 C 1.46497 * 120.00395 * 179.72733 * 6 4 3 8 8 H 1.08998 * 109.49877 * 35.05675 * 7 6 4 9 9 C 1.53196 * 109.49143 * 274.99593 * 7 6 4 10 10 N 1.46931 * 108.78530 * 185.36773 * 9 7 6 11 11 C 1.36944 * 120.63866 * 233.68709 * 10 9 7 12 12 H 1.07998 * 119.99522 * 152.62980 * 11 10 9 13 13 C 1.38813 * 120.00293 * 332.63546 * 11 10 9 14 14 N 1.31610 * 120.00387 * 159.32147 * 13 11 10 15 15 Si 1.86809 * 119.99667 * 339.32106 * 13 11 10 16 16 H 1.48502 * 109.46619 * 93.00836 * 15 13 11 17 17 H 1.48500 * 109.47037 * 213.00595 * 15 13 11 18 18 H 1.48497 * 109.46957 * 333.01159 * 15 13 11 19 19 C 1.46933 * 118.71907 * 53.66641 * 10 9 7 20 20 C 1.53099 * 108.78854 * 306.50057 * 19 10 9 21 21 C 1.53086 * 109.47083 * 294.29435 * 20 19 10 22 22 C 1.53107 * 109.16456 * 297.01662 * 21 20 19 23 23 O 1.42902 * 109.40713 * 302.51914 * 22 21 20 24 24 C 1.42905 * 114.13280 * 61.17439 * 23 22 21 25 25 C 1.53083 * 109.47134 * 174.62596 * 20 19 10 26 26 C 1.52921 * 109.49697 * 54.45643 * 20 19 10 27 27 H 1.08997 * 109.47438 * 59.99804 * 1 2 3 28 28 H 1.09005 * 109.47141 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46981 * 300.00043 * 1 2 3 30 30 H 1.08990 * 109.47163 * 239.99928 * 2 1 3 31 31 H 1.09002 * 109.46738 * 119.99633 * 2 1 3 32 32 H 1.09006 * 109.46885 * 59.99703 * 3 2 1 33 33 H 1.08997 * 109.47122 * 300.00389 * 3 2 1 34 34 H 0.97001 * 119.99343 * 359.71935 * 6 4 3 35 35 H 1.08996 * 109.58636 * 305.15396 * 9 7 6 36 36 H 1.08993 * 109.58831 * 65.43653 * 9 7 6 37 37 H 0.96999 * 120.00106 * 179.97438 * 14 13 11 38 38 H 1.09008 * 109.58469 * 66.28781 * 19 10 9 39 39 H 1.09005 * 109.58599 * 186.56342 * 19 10 9 40 40 H 1.09001 * 109.52534 * 56.92821 * 21 20 19 41 41 H 1.09004 * 109.51851 * 177.11188 * 21 20 19 42 42 H 1.08993 * 109.48150 * 182.53880 * 22 21 20 43 43 H 1.09004 * 109.48164 * 62.49475 * 22 21 20 44 44 H 1.08998 * 109.48374 * 178.83878 * 24 23 22 45 45 H 1.09004 * 109.48684 * 58.79656 * 24 23 22 46 46 H 1.08996 * 109.52247 * 182.87705 * 25 20 19 47 47 H 1.08997 * 109.52105 * 303.07011 * 25 20 19 48 48 H 1.09003 * 109.45817 * 178.81301 * 26 20 19 49 49 H 1.08997 * 109.46206 * 58.86722 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4425 -0.0006 5 8 4.1533 0.3922 -0.0006 6 7 4.2209 2.6097 0.0049 7 6 5.6859 2.6097 0.0103 8 1 6.0519 1.7702 -0.5807 9 6 6.1917 2.4802 1.4506 10 7 7.6552 2.6112 1.4516 11 6 8.4414 1.6512 2.0309 12 1 9.4496 1.4933 1.6773 13 6 7.9425 0.8808 3.0723 14 7 8.4988 -0.2767 3.3598 15 14 6.4814 1.4873 4.0659 16 1 5.2273 0.9484 3.4811 17 1 6.6116 1.0241 5.4708 18 1 6.4440 2.9715 4.0354 19 6 8.2587 3.7920 0.8189 20 6 7.7280 3.9099 -0.6123 21 6 8.2212 2.7196 -1.4391 22 6 9.7496 2.7620 -1.5191 23 8 10.1610 4.0070 -2.0873 24 6 9.7693 5.1532 -1.3291 25 6 8.2416 5.2074 -1.2417 26 6 6.1990 3.9206 -0.5904 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9563 -0.8899 34 1 3.7358 3.4497 0.0052 35 1 5.7540 3.2678 2.0638 36 1 5.9097 1.5063 1.8507 37 1 8.1504 -0.8148 4.0878 38 1 7.9909 4.6857 1.3826 39 1 9.3432 3.6827 0.8009 40 1 7.9069 1.7905 -0.9636 41 1 7.8022 2.7755 -2.4439 42 1 10.1037 1.9424 -2.1442 43 1 10.1689 2.6633 -0.5178 44 1 10.1377 6.0553 -1.8173 45 1 10.1887 5.0857 -0.3252 46 1 7.8232 5.3174 -2.2422 47 1 7.9418 6.0548 -0.6253 48 1 5.8220 4.0257 -1.6078 49 1 5.8503 4.7579 0.0140 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099559688.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:58 Heat of formation + Delta-G solvation = -74.745568 kcal Electronic energy + Delta-G solvation = -28123.449443 eV Core-core repulsion = 24471.465785 eV Total energy + Delta-G solvation = -3651.983659 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.33287 -39.28929 -37.13911 -34.53348 -34.15299 -33.85924 -31.38897 -30.77860 -30.13983 -27.77225 -27.13533 -25.48778 -23.66222 -23.21269 -22.12110 -21.61133 -20.55732 -20.05370 -18.00556 -16.94779 -16.77520 -16.15494 -15.75942 -15.66169 -15.39006 -15.20204 -14.49489 -14.43230 -14.09204 -14.06050 -13.73919 -13.50228 -13.16616 -13.03001 -12.66500 -12.60391 -12.08874 -12.02043 -11.90160 -11.74339 -11.58962 -11.33743 -11.23607 -11.16365 -11.00081 -10.80989 -10.77238 -10.54571 -10.34416 -10.09011 -9.88919 -9.62413 -9.54774 -9.44891 -9.01163 -8.84719 -8.50801 -6.98801 -5.94683 -3.31398 2.92960 3.35764 3.40615 3.47313 3.49909 4.17455 4.54559 4.76955 4.81339 4.86191 4.92708 4.96438 5.03765 5.16987 5.30690 5.37076 5.38919 5.41273 5.43892 5.50522 5.54096 5.58918 5.66518 5.70042 5.75691 5.79726 5.92305 5.94496 6.00915 6.06037 6.11221 6.11367 6.12923 6.19129 6.29849 6.36050 6.51193 6.53232 6.61891 6.64016 6.69453 6.78615 6.91061 7.50754 7.76768 7.94054 8.32205 8.53971 8.91744 9.71828 10.07021 11.20855 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.011425 B = 0.005620 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.242544 B = 4980.639955 C = 6609.851729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.140 4.140 4 C 0.503 3.497 5 O -0.529 6.529 6 N -0.729 5.729 7 C 0.123 3.877 8 H 0.094 0.906 9 C 0.120 3.880 10 N -0.597 5.597 11 C -0.264 4.264 12 H 0.087 0.913 13 C 0.031 3.969 14 N -0.902 5.902 15 Si 0.879 3.121 16 H -0.288 1.288 17 H -0.304 1.304 18 H -0.272 1.272 19 C 0.154 3.846 20 C -0.073 4.073 21 C -0.137 4.137 22 C 0.061 3.939 23 O -0.390 6.390 24 C 0.061 3.939 25 C -0.140 4.140 26 C -0.104 4.104 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.393 0.607 35 H 0.022 0.978 36 H 0.079 0.921 37 H 0.263 0.737 38 H 0.023 0.977 39 H 0.067 0.933 40 H 0.091 0.909 41 H 0.056 0.944 42 H 0.088 0.912 43 H 0.062 0.938 44 H 0.085 0.915 45 H 0.053 0.947 46 H 0.066 0.934 47 H 0.069 0.931 48 H 0.058 0.942 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.187 10.604 -9.707 17.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.180 4.180 4 C 0.289 3.711 5 O -0.404 6.404 6 N -0.381 5.381 7 C 0.018 3.982 8 H 0.112 0.888 9 C -0.007 4.007 10 N -0.319 5.319 11 C -0.392 4.392 12 H 0.104 0.896 13 C -0.169 4.169 14 N -0.544 5.544 15 Si 0.710 3.290 16 H -0.215 1.215 17 H -0.232 1.232 18 H -0.198 1.198 19 C 0.028 3.972 20 C -0.075 4.075 21 C -0.174 4.174 22 C -0.016 4.016 23 O -0.309 6.309 24 C -0.016 4.016 25 C -0.178 4.178 26 C -0.142 4.142 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.226 0.774 35 H 0.040 0.960 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.041 0.959 39 H 0.086 0.914 40 H 0.110 0.890 41 H 0.075 0.925 42 H 0.106 0.894 43 H 0.080 0.920 44 H 0.104 0.896 45 H 0.072 0.928 46 H 0.084 0.916 47 H 0.088 0.912 48 H 0.077 0.923 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.590 9.668 -9.742 16.744 hybrid contribution -1.393 0.729 0.979 1.852 sum -10.983 10.397 -8.763 17.479 Atomic orbital electron populations 1.21789 0.95714 1.01817 1.01527 1.21285 0.94949 0.94912 1.03803 1.21711 0.92309 1.00048 1.03906 1.20741 0.90123 0.83969 0.76246 1.90766 1.70311 1.31104 1.48269 1.46166 1.07800 1.08213 1.75888 1.21778 0.77823 0.98770 0.99841 0.88774 1.21693 0.85109 1.00612 0.93269 1.44224 1.00293 1.21524 1.65902 1.18830 0.98373 1.10172 1.11820 0.89568 1.25233 0.97616 0.96393 0.97639 1.69821 1.42979 1.10338 1.31259 0.86986 0.83255 0.79293 0.79459 1.21522 1.23195 1.19766 1.21112 0.97378 0.89448 0.89307 1.20987 0.94153 0.94489 0.97913 1.22137 0.96140 1.00026 0.99130 1.22640 0.94441 0.85302 0.99184 1.87852 1.78081 1.14397 1.50600 1.22536 0.93923 0.88814 0.96338 1.22168 0.96806 0.97765 1.01069 1.21684 0.95587 0.96840 1.00086 0.92853 0.92494 0.92806 0.91196 0.91103 0.89240 0.89277 0.77368 0.95967 0.90264 0.92728 0.95885 0.91448 0.89019 0.92516 0.89422 0.91987 0.89637 0.92844 0.91562 0.91223 0.92297 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 37.16 0.37 -0.98 16 2 C -0.11 -1.33 5.22 -26.73 -0.14 -1.47 16 3 C -0.14 -1.58 5.70 -27.89 -0.16 -1.74 16 4 C 0.50 8.19 7.80 -10.99 -0.09 8.11 16 5 O -0.53 -11.40 15.65 5.56 0.09 -11.32 16 6 N -0.73 -10.76 5.08 -53.68 -0.27 -11.04 16 7 C 0.12 2.19 2.27 -67.80 -0.15 2.04 16 8 H 0.09 1.94 5.87 -51.93 -0.30 1.64 16 9 C 0.12 2.64 3.78 -3.71 -0.01 2.63 16 10 N -0.60 -13.75 2.17 -172.36 -0.37 -14.12 16 11 C -0.26 -7.27 10.04 -15.06 -0.15 -7.42 16 12 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 13 C 0.03 0.91 5.23 -17.43 -0.09 0.82 16 14 N -0.90 -28.05 13.97 55.49 0.78 -27.27 16 15 Si 0.88 23.07 24.35 -169.99 -4.14 18.93 16 16 H -0.29 -7.62 6.62 56.52 0.37 -7.24 16 17 H -0.30 -8.07 7.11 56.52 0.40 -7.67 16 18 H -0.27 -6.91 6.63 56.52 0.37 -6.53 16 19 C 0.15 2.86 4.60 -3.75 -0.02 2.84 16 20 C -0.07 -1.12 0.52 -154.41 -0.08 -1.20 16 21 C -0.14 -2.25 4.37 -26.63 -0.12 -2.37 16 22 C 0.06 0.98 6.57 37.21 0.24 1.22 16 23 O -0.39 -6.06 10.76 -35.23 -0.38 -6.44 16 24 C 0.06 0.79 6.57 37.22 0.24 1.03 16 25 C -0.14 -1.76 4.92 -26.63 -0.13 -1.89 16 26 C -0.10 -1.50 4.19 -26.74 -0.11 -1.61 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 31 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.39 4.26 8.60 -40.82 -0.35 3.91 16 35 H 0.02 0.49 7.08 -51.93 -0.37 0.12 16 36 H 0.08 2.06 4.49 -51.93 -0.23 1.83 16 37 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 38 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 39 H 0.07 1.28 4.85 -51.93 -0.25 1.03 16 40 H 0.09 1.81 6.11 -51.93 -0.32 1.49 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.06 1.10 6.48 -51.93 -0.34 0.76 16 44 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.05 0.71 6.74 -51.93 -0.35 0.36 16 46 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 362.65 15.07 5.47 5.47 Total: -1.00 -33.62 362.65 -7.69 -41.31 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -8.46 Total: 4.47 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -0.39 Total: 0.02 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: 0.13 Total: -52.43 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.29 Total: -17.75 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -4.14 Total: 18.93 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.62 -7.69 -41.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099559688.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.435 kcal (2) G-P(sol) polarization free energy of solvation -33.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds