Wall clock time and date at job start Tue Mar 31 2020 10:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47125 * 2 1 4 4 C 1.50693 * 109.47080 * 180.02562 * 3 2 1 5 5 O 1.21278 * 120.00110 * 359.97438 * 4 3 2 6 6 N 1.34781 * 120.00227 * 180.27825 * 4 3 2 7 7 C 1.46497 * 120.00395 * 179.72733 * 6 4 3 8 8 H 1.08998 * 109.49877 * 35.05675 * 7 6 4 9 9 C 1.53196 * 109.49143 * 274.99593 * 7 6 4 10 10 N 1.46931 * 108.78530 * 185.36773 * 9 7 6 11 11 C 1.36944 * 120.63866 * 233.68709 * 10 9 7 12 12 H 1.07998 * 119.99522 * 152.62980 * 11 10 9 13 13 C 1.38813 * 120.00293 * 332.63546 * 11 10 9 14 14 N 1.31610 * 120.00387 * 159.32147 * 13 11 10 15 15 Si 1.86809 * 119.99667 * 339.32106 * 13 11 10 16 16 H 1.48502 * 109.46619 * 93.00836 * 15 13 11 17 17 H 1.48500 * 109.47037 * 213.00595 * 15 13 11 18 18 H 1.48497 * 109.46957 * 333.01159 * 15 13 11 19 19 C 1.46933 * 118.71907 * 53.66641 * 10 9 7 20 20 C 1.53099 * 108.78854 * 306.50057 * 19 10 9 21 21 C 1.53086 * 109.47083 * 294.29435 * 20 19 10 22 22 C 1.53107 * 109.16456 * 297.01662 * 21 20 19 23 23 O 1.42902 * 109.40713 * 302.51914 * 22 21 20 24 24 C 1.42905 * 114.13280 * 61.17439 * 23 22 21 25 25 C 1.53083 * 109.47134 * 174.62596 * 20 19 10 26 26 C 1.52921 * 109.49697 * 54.45643 * 20 19 10 27 27 H 1.08997 * 109.47438 * 59.99804 * 1 2 3 28 28 H 1.09005 * 109.47141 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46981 * 300.00043 * 1 2 3 30 30 H 1.08990 * 109.47163 * 239.99928 * 2 1 3 31 31 H 1.09002 * 109.46738 * 119.99633 * 2 1 3 32 32 H 1.09006 * 109.46885 * 59.99703 * 3 2 1 33 33 H 1.08997 * 109.47122 * 300.00389 * 3 2 1 34 34 H 0.97001 * 119.99343 * 359.71935 * 6 4 3 35 35 H 1.08996 * 109.58636 * 305.15396 * 9 7 6 36 36 H 1.08993 * 109.58831 * 65.43653 * 9 7 6 37 37 H 0.96999 * 120.00106 * 179.97438 * 14 13 11 38 38 H 1.09008 * 109.58469 * 66.28781 * 19 10 9 39 39 H 1.09005 * 109.58599 * 186.56342 * 19 10 9 40 40 H 1.09001 * 109.52534 * 56.92821 * 21 20 19 41 41 H 1.09004 * 109.51851 * 177.11188 * 21 20 19 42 42 H 1.08993 * 109.48150 * 182.53880 * 22 21 20 43 43 H 1.09004 * 109.48164 * 62.49475 * 22 21 20 44 44 H 1.08998 * 109.48374 * 178.83878 * 24 23 22 45 45 H 1.09004 * 109.48684 * 58.79656 * 24 23 22 46 46 H 1.08996 * 109.52247 * 182.87705 * 25 20 19 47 47 H 1.08997 * 109.52105 * 303.07011 * 25 20 19 48 48 H 1.09003 * 109.45817 * 178.81301 * 26 20 19 49 49 H 1.08997 * 109.46206 * 58.86722 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4425 -0.0006 5 8 4.1533 0.3922 -0.0006 6 7 4.2209 2.6097 0.0049 7 6 5.6859 2.6097 0.0103 8 1 6.0519 1.7702 -0.5807 9 6 6.1917 2.4802 1.4506 10 7 7.6552 2.6112 1.4516 11 6 8.4414 1.6512 2.0309 12 1 9.4496 1.4933 1.6773 13 6 7.9425 0.8808 3.0723 14 7 8.4988 -0.2767 3.3598 15 14 6.4814 1.4873 4.0659 16 1 5.2273 0.9484 3.4811 17 1 6.6116 1.0241 5.4708 18 1 6.4440 2.9715 4.0354 19 6 8.2587 3.7920 0.8189 20 6 7.7280 3.9099 -0.6123 21 6 8.2212 2.7196 -1.4391 22 6 9.7496 2.7620 -1.5191 23 8 10.1610 4.0070 -2.0873 24 6 9.7693 5.1532 -1.3291 25 6 8.2416 5.2074 -1.2417 26 6 6.1990 3.9206 -0.5904 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9563 -0.8899 34 1 3.7358 3.4497 0.0052 35 1 5.7540 3.2678 2.0638 36 1 5.9097 1.5063 1.8507 37 1 8.1504 -0.8148 4.0878 38 1 7.9909 4.6857 1.3826 39 1 9.3432 3.6827 0.8009 40 1 7.9069 1.7905 -0.9636 41 1 7.8022 2.7755 -2.4439 42 1 10.1037 1.9424 -2.1442 43 1 10.1689 2.6633 -0.5178 44 1 10.1377 6.0553 -1.8173 45 1 10.1887 5.0857 -0.3252 46 1 7.8232 5.3174 -2.2422 47 1 7.9418 6.0548 -0.6253 48 1 5.8220 4.0257 -1.6078 49 1 5.8503 4.7579 0.0140 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099559688.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:57 Heat of formation + Delta-G solvation = -99.591923 kcal Electronic energy + Delta-G solvation = -28124.526862 eV Core-core repulsion = 24471.465785 eV Total energy + Delta-G solvation = -3653.061077 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.67531 -40.57710 -38.55223 -35.96523 -35.40426 -35.25381 -33.37941 -31.99973 -31.51459 -28.83069 -28.45134 -27.37581 -24.90080 -24.49604 -23.62686 -22.91909 -21.88075 -21.27801 -19.43259 -18.78311 -18.10130 -17.67991 -17.04732 -16.81395 -16.78823 -16.57504 -16.03438 -15.86503 -15.38187 -15.29619 -15.24775 -14.88884 -14.70444 -14.38842 -14.03620 -13.95180 -13.65449 -13.32785 -13.10701 -12.98902 -12.89775 -12.66977 -12.58514 -12.49130 -12.26674 -12.14896 -12.06179 -11.89568 -11.77561 -11.67313 -11.64803 -11.10993 -11.03433 -10.87452 -10.74813 -10.26062 -10.13015 -8.93735 -8.21831 -5.51973 1.23440 1.28070 1.38126 1.66776 2.18098 2.36414 3.01834 3.02471 3.32604 3.63463 3.71724 3.82572 3.87911 4.02388 4.06444 4.11400 4.19174 4.19368 4.33616 4.34321 4.36165 4.52842 4.55707 4.67972 4.69609 4.71229 4.74151 4.79279 4.83040 4.88838 4.91044 4.95258 5.03686 5.06839 5.11429 5.19814 5.21907 5.24771 5.27257 5.38726 5.42885 5.45600 5.53166 5.82653 6.08408 6.32193 6.61769 6.86561 7.35399 7.58278 7.97199 8.97854 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.011425 B = 0.005620 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.242544 B = 4980.639955 C = 6609.851729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C -0.128 4.128 4 C 0.493 3.507 5 O -0.594 6.594 6 N -0.714 5.714 7 C 0.134 3.866 8 H 0.057 0.943 9 C 0.120 3.880 10 N -0.609 5.609 11 C -0.239 4.239 12 H 0.056 0.944 13 C -0.034 4.034 14 N -0.954 5.954 15 Si 0.944 3.056 16 H -0.298 1.298 17 H -0.310 1.310 18 H -0.251 1.251 19 C 0.150 3.850 20 C -0.069 4.069 21 C -0.131 4.131 22 C 0.067 3.933 23 O -0.397 6.397 24 C 0.050 3.950 25 C -0.128 4.128 26 C -0.094 4.094 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.037 0.963 32 H 0.115 0.885 33 H 0.129 0.871 34 H 0.418 0.582 35 H 0.036 0.964 36 H 0.033 0.967 37 H 0.259 0.741 38 H 0.043 0.957 39 H 0.055 0.945 40 H 0.048 0.952 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.035 0.965 44 H 0.117 0.883 45 H 0.045 0.955 46 H 0.085 0.915 47 H 0.097 0.903 48 H 0.089 0.911 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.978 15.173 -11.407 22.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.153 4.153 3 C -0.167 4.167 4 C 0.282 3.718 5 O -0.474 6.474 6 N -0.366 5.366 7 C 0.027 3.973 8 H 0.076 0.924 9 C -0.007 4.007 10 N -0.333 5.333 11 C -0.369 4.369 12 H 0.074 0.926 13 C -0.229 4.229 14 N -0.600 5.600 15 Si 0.774 3.226 16 H -0.226 1.226 17 H -0.239 1.239 18 H -0.174 1.174 19 C 0.026 3.974 20 C -0.071 4.071 21 C -0.169 4.169 22 C -0.010 4.010 23 O -0.316 6.316 24 C -0.026 4.026 25 C -0.166 4.166 26 C -0.132 4.132 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.133 0.867 33 H 0.147 0.853 34 H 0.256 0.744 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.091 0.909 42 H 0.108 0.892 43 H 0.054 0.946 44 H 0.135 0.865 45 H 0.063 0.937 46 H 0.103 0.897 47 H 0.115 0.885 48 H 0.107 0.893 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.422 14.351 -11.470 22.177 hybrid contribution -0.433 -0.696 1.409 1.630 sum -12.855 13.654 -10.062 21.282 Atomic orbital electron populations 1.21732 0.92836 1.02407 1.03037 1.21289 0.97350 0.95220 1.01453 1.21769 0.87989 1.00041 1.06930 1.21776 0.92301 0.83201 0.74541 1.90753 1.71994 1.33532 1.51131 1.45980 1.06561 1.09227 1.74869 1.21352 0.79680 0.99858 0.96406 0.92437 1.21638 0.84456 0.98359 0.96202 1.44296 1.00682 1.22296 1.65987 1.18794 0.97508 1.10074 1.10492 0.92646 1.25860 1.00824 0.96768 0.99431 1.69959 1.45622 1.11978 1.32474 0.85941 0.79756 0.79679 0.77194 1.22622 1.23942 1.17448 1.21321 0.96795 0.87959 0.91333 1.20933 0.95128 0.95717 0.95326 1.22032 0.96208 0.98876 0.99785 1.22458 0.94323 0.86352 0.97872 1.87848 1.78344 1.14525 1.50895 1.22827 0.94757 0.88780 0.96205 1.22121 0.95957 0.96326 1.02238 1.21664 0.94351 0.95158 1.02004 0.90816 0.92531 0.91682 0.92929 0.94378 0.86692 0.85259 0.74394 0.94644 0.94886 0.93252 0.93894 0.92666 0.93325 0.90896 0.89211 0.94629 0.86532 0.93692 0.89684 0.88502 0.89293 0.89219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.91 71.98 0.71 -1.48 16 2 C -0.11 -2.67 5.22 30.59 0.16 -2.51 16 3 C -0.13 -2.53 5.70 29.85 0.17 -2.36 16 4 C 0.49 15.62 7.80 87.65 0.68 16.30 16 5 O -0.59 -26.78 15.65 -3.02 -0.05 -26.83 16 6 N -0.71 -19.25 5.08 -442.15 -2.25 -21.49 16 7 C 0.13 4.58 2.27 45.08 0.10 4.68 16 8 H 0.06 2.44 5.87 -2.39 -0.01 2.43 16 9 C 0.12 5.24 3.78 86.36 0.33 5.56 16 10 N -0.61 -28.37 2.17 -699.23 -1.52 -29.89 16 11 C -0.24 -13.81 10.04 84.03 0.84 -12.97 16 12 H 0.06 3.47 8.06 -2.91 -0.02 3.45 16 13 C -0.03 -2.09 5.23 84.86 0.44 -1.64 16 14 N -0.95 -63.08 13.97 21.65 0.30 -62.78 16 15 Si 0.94 49.77 24.35 68.60 1.67 51.44 16 16 H -0.30 -16.04 6.62 99.48 0.66 -15.38 16 17 H -0.31 -16.49 7.11 99.48 0.71 -15.79 16 18 H -0.25 -12.09 6.63 99.48 0.66 -11.43 16 19 C 0.15 5.39 4.60 86.33 0.40 5.79 16 20 C -0.07 -1.92 0.52 -52.12 -0.03 -1.95 16 21 C -0.13 -4.26 4.37 30.66 0.13 -4.13 16 22 C 0.07 2.17 6.57 72.02 0.47 2.65 16 23 O -0.40 -11.62 10.76 -148.98 -1.60 -13.22 16 24 C 0.05 1.14 6.57 72.02 0.47 1.62 16 25 C -0.13 -2.59 4.92 30.66 0.15 -2.44 16 26 C -0.09 -2.31 4.19 30.59 0.13 -2.18 16 27 H 0.07 0.85 8.14 -2.39 -0.02 0.84 16 28 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.05 1.37 8.10 -2.39 -0.02 1.35 16 31 H 0.04 1.11 8.10 -2.39 -0.02 1.09 16 32 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 33 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.42 7.06 8.60 -92.71 -0.80 6.26 16 35 H 0.04 1.46 7.08 -2.39 -0.02 1.44 16 36 H 0.03 1.76 4.49 -2.39 -0.01 1.75 16 37 H 0.26 16.42 8.31 -92.71 -0.77 15.65 16 38 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 39 H 0.05 2.11 4.85 -2.38 -0.01 2.10 16 40 H 0.05 2.01 6.11 -2.39 -0.01 2.00 16 41 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 43 H 0.04 1.33 6.48 -2.38 -0.02 1.32 16 44 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.04 1.10 6.74 -2.38 -0.02 1.08 16 46 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 48 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 49 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -81.73 362.65 1.77 -79.96 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: 0.04 Total: 17.87 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: 5.17 Total: 4.94 kcal Atomic # 7 Polarization: -110.70 SS G_CDS: -3.46 Total: -114.16 kcal Atomic # 8 Polarization: -38.40 SS G_CDS: -1.65 Total: -40.05 kcal Atomic # 14 Polarization: 49.77 SS G_CDS: 1.67 Total: 51.44 kcal Total: -81.73 1.77 -79.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099559688.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.634 kcal (2) G-P(sol) polarization free energy of solvation -81.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds