Wall clock time and date at job start Tue Mar 31 2020 10:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08999 * 110.27632 * 55.63155 * 3 2 1 5 5 O 1.43643 * 110.30639 * 293.54292 * 3 2 1 6 6 C 1.43238 * 109.97249 * 216.65714 * 5 3 2 7 7 C 1.54384 * 107.58879 * 1.71441 * 6 5 3 8 8 C 1.54943 * 110.31006 * 177.83444 * 3 2 1 9 9 H 1.09003 * 111.12605 * 37.43613 * 8 3 2 10 10 C 1.50703 * 111.12492 * 273.27707 * 8 3 2 11 11 O 1.21284 * 119.99909 * 359.97438 * 10 8 3 12 12 N 1.34772 * 120.00252 * 180.02562 * 10 8 3 13 13 C 1.48115 * 127.03423 * 179.70567 * 12 10 8 14 14 C 1.54597 * 103.42419 * 219.28612 * 13 12 10 15 15 H 1.09001 * 110.57540 * 81.17590 * 14 13 12 16 16 C 1.53006 * 110.98838 * 204.37328 * 14 13 12 17 17 N 1.46493 * 109.47200 * 288.65306 * 16 14 13 18 18 C 1.36941 * 120.00024 * 179.97438 * 17 16 14 19 19 H 1.08002 * 119.99904 * 0.02562 * 18 17 16 20 20 C 1.38806 * 120.00112 * 179.97438 * 18 17 16 21 21 N 1.31622 * 120.00233 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 120.00070 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.46939 * 90.00041 * 22 20 18 24 24 H 1.48499 * 109.47117 * 210.00008 * 22 20 18 25 25 H 1.48494 * 109.47004 * 329.99793 * 22 20 18 26 26 C 1.54622 * 102.91177 * 322.86834 * 14 13 12 27 27 H 1.08996 * 110.32488 * 262.80116 * 26 14 13 28 28 C 1.53005 * 110.40849 * 140.63360 * 26 14 13 29 29 C 1.47486 * 127.03277 * 0.02656 * 12 10 8 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 33 33 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 34 34 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 35 35 H 1.09000 * 109.83020 * 121.22678 * 6 5 3 36 36 H 1.08998 * 109.83279 * 242.19998 * 6 5 3 37 37 H 1.08993 * 110.85074 * 139.54829 * 7 6 5 38 38 H 1.09000 * 110.84504 * 263.16967 * 7 6 5 39 39 H 1.09001 * 110.66367 * 337.77142 * 13 12 10 40 40 H 1.09010 * 110.66244 * 100.88998 * 13 12 10 41 41 H 1.09002 * 109.46741 * 48.66033 * 16 14 13 42 42 H 1.08999 * 109.46917 * 168.65309 * 16 14 13 43 43 H 0.97004 * 120.00201 * 359.97438 * 17 16 14 44 44 H 0.97000 * 120.00147 * 180.02562 * 21 20 18 45 45 H 1.08992 * 109.47299 * 302.87502 * 28 26 14 46 46 H 1.08995 * 109.47093 * 62.87773 * 28 26 14 47 47 H 1.09000 * 109.46716 * 182.87326 * 28 26 14 48 48 H 1.09006 * 109.91256 * 273.87100 * 29 12 10 49 49 H 1.09000 * 109.91467 * 34.95975 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6217 1.9911 0.8440 5 8 1.6988 2.0919 -1.2350 6 6 2.7561 2.9725 -1.6331 7 6 3.8856 2.8476 -0.5881 8 6 3.5883 1.4656 0.0549 9 1 4.0145 0.6564 -0.5382 10 6 4.0822 1.4110 1.4777 11 8 3.2887 1.3581 2.3934 12 7 5.4055 1.4220 1.7325 13 6 6.0585 1.3804 3.0613 14 6 7.2461 2.3582 2.9085 15 1 6.9127 3.3884 3.0340 16 6 8.3605 2.0266 3.9031 17 7 7.9299 2.3857 5.2565 18 6 8.7678 2.1776 6.3194 19 1 9.7463 1.7492 6.1599 20 6 8.3600 2.5183 7.6018 21 7 9.1656 2.3188 8.6234 22 14 6.6679 3.2599 7.8776 23 1 5.6852 2.1736 8.1216 24 1 6.7095 4.1635 9.0554 25 1 6.2639 4.0321 6.6753 26 6 7.7154 2.1075 1.4567 27 1 8.5569 1.4148 1.4451 28 6 8.1048 3.4267 0.7865 29 6 6.4997 1.4847 0.7456 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.1280 2.6831 -2.6160 36 1 2.3911 3.9991 -1.6621 37 1 4.8628 2.8486 -1.0711 38 1 3.8175 3.6433 0.1537 39 1 5.3746 1.7253 3.8369 40 1 6.4169 0.3749 3.2824 41 1 8.5783 0.9594 3.8621 42 1 9.2570 2.5905 3.6455 43 1 7.0512 2.7708 5.3998 44 1 8.8805 2.5565 9.5195 45 1 7.2587 4.1130 0.8163 46 1 8.9493 3.8678 1.3161 47 1 8.3841 3.2389 -0.2502 48 1 6.7461 0.4806 0.4002 49 1 6.2022 2.1053 -0.0997 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106456774.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:44 Heat of formation + Delta-G solvation = -78.154933 kcal Electronic energy + Delta-G solvation = -26933.108942 eV Core-core repulsion = 23280.977442 eV Total energy + Delta-G solvation = -3652.131500 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.87302 -39.39409 -37.83330 -34.92244 -33.81198 -33.19893 -32.46367 -31.56505 -29.60068 -28.72310 -26.63185 -25.97635 -24.02522 -23.20307 -22.31822 -21.16381 -21.12502 -20.11546 -19.39536 -17.92306 -17.41466 -16.62653 -16.21760 -15.89963 -15.36080 -15.05177 -14.54343 -14.38011 -14.14584 -14.09696 -13.79309 -13.65668 -13.40120 -13.31512 -13.26285 -12.80589 -12.50714 -12.43087 -12.25006 -12.17086 -11.93361 -11.70944 -11.56296 -11.45907 -11.26402 -11.05084 -10.97419 -10.93906 -10.68433 -10.57219 -10.43188 -10.13470 -9.96124 -9.72920 -9.60237 -8.92423 -8.76553 -7.26199 -5.78526 -3.14651 2.43513 2.76540 3.38476 3.42235 3.43111 3.46740 4.00121 4.22367 4.29756 4.42298 4.53552 4.58774 4.68217 4.70873 4.77765 4.82568 4.93876 5.04263 5.11873 5.18543 5.24917 5.33619 5.35965 5.37036 5.41667 5.51159 5.53079 5.59891 5.62775 5.65081 5.66760 5.69675 5.80357 5.86997 5.93516 5.98140 6.01174 6.04743 6.11524 6.12518 6.31784 6.57132 6.67487 6.70306 7.42716 7.96440 8.00384 8.40308 9.18827 9.91441 10.10303 11.39739 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.016977 B = 0.003395 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.914378 B = 8245.348688 C = 9253.067118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C 0.101 3.899 4 H 0.087 0.913 5 O -0.377 6.377 6 C 0.054 3.946 7 C -0.146 4.146 8 C -0.140 4.140 9 H 0.110 0.890 10 C 0.542 3.458 11 O -0.534 6.534 12 N -0.618 5.618 13 C 0.111 3.889 14 C -0.107 4.107 15 H 0.082 0.918 16 C 0.170 3.830 17 N -0.756 5.756 18 C -0.246 4.246 19 H 0.090 0.910 20 C 0.006 3.994 21 N -0.934 5.934 22 Si 0.882 3.118 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.278 1.278 26 C -0.099 4.099 27 H 0.090 0.910 28 C -0.142 4.142 29 C 0.100 3.900 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.030 0.970 42 H 0.032 0.968 43 H 0.361 0.639 44 H 0.260 0.740 45 H 0.054 0.946 46 H 0.064 0.936 47 H 0.055 0.945 48 H 0.068 0.932 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.262 -1.112 -25.552 27.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C 0.043 3.957 4 H 0.105 0.895 5 O -0.296 6.296 6 C -0.023 4.023 7 C -0.183 4.183 8 C -0.161 4.161 9 H 0.129 0.871 10 C 0.330 3.670 11 O -0.411 6.411 12 N -0.352 5.352 13 C -0.011 4.011 14 C -0.126 4.126 15 H 0.101 0.899 16 C 0.042 3.958 17 N -0.402 5.402 18 C -0.376 4.376 19 H 0.108 0.892 20 C -0.190 4.190 21 N -0.581 5.581 22 Si 0.713 3.287 23 H -0.209 1.209 24 H -0.217 1.217 25 H -0.204 1.204 26 C -0.119 4.119 27 H 0.109 0.891 28 C -0.199 4.199 29 C -0.023 4.023 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.097 0.903 41 H 0.048 0.952 42 H 0.050 0.950 43 H 0.194 0.806 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.083 0.917 47 H 0.074 0.926 48 H 0.086 0.914 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.786 -1.248 -25.057 27.308 hybrid contribution -0.733 0.599 0.454 1.050 sum -11.518 -0.649 -24.603 27.173 Atomic orbital electron populations 1.21681 0.94990 1.01512 1.02281 1.21648 0.97193 0.94302 1.02591 1.22869 0.90654 0.94693 0.87464 0.89521 1.88425 1.41506 1.59455 1.40239 1.23083 0.87076 0.94674 0.97441 1.23158 1.00333 0.95948 0.98906 1.23014 0.98354 1.00094 0.94659 0.87148 1.19712 0.80660 0.76289 0.90333 1.90744 1.53746 1.49974 1.46638 1.48826 1.04485 1.72471 1.09387 1.22548 0.93938 1.00145 0.84422 1.22576 0.95972 0.99900 0.94197 0.89927 1.20601 0.93576 0.97822 0.83795 1.42730 1.17699 1.77116 1.02677 1.19032 0.98190 1.35301 0.85042 0.89175 1.24662 0.97679 1.01152 0.95475 1.69700 1.36013 1.53698 0.98727 0.86582 0.85514 0.79335 0.77303 1.20907 1.21654 1.20392 1.22077 0.97015 0.98110 0.94677 0.89119 1.21839 1.01918 0.96202 0.99980 1.22349 0.86955 1.00895 0.92106 0.92779 0.92146 0.92616 0.90375 0.91506 0.91002 0.91091 0.89074 0.89867 0.89745 0.90306 0.95191 0.95027 0.80632 0.93015 0.92722 0.91667 0.92610 0.91401 0.90634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.83 37.16 0.37 -1.01 16 2 C -0.12 -1.19 5.68 -26.73 -0.15 -1.35 16 3 C 0.10 1.09 2.57 -25.70 -0.07 1.03 16 4 H 0.09 1.12 7.38 -51.93 -0.38 0.73 16 5 O -0.38 -3.99 10.69 -35.23 -0.38 -4.37 16 6 C 0.05 0.42 7.79 37.88 0.30 0.71 16 7 C -0.15 -1.13 5.80 -24.78 -0.14 -1.27 16 8 C -0.14 -1.35 2.27 -89.52 -0.20 -1.56 16 9 H 0.11 0.89 8.06 -51.93 -0.42 0.47 16 10 C 0.54 7.19 7.23 -10.99 -0.08 7.12 16 11 O -0.53 -9.25 15.93 5.55 0.09 -9.16 16 12 N -0.62 -7.64 3.29 -169.97 -0.56 -8.20 16 13 C 0.11 1.64 6.44 -2.31 -0.01 1.63 16 14 C -0.11 -1.50 2.60 -88.92 -0.23 -1.73 16 15 H 0.08 1.24 7.86 -51.93 -0.41 0.83 16 16 C 0.17 3.04 5.58 -4.04 -0.02 3.02 16 17 N -0.76 -17.63 5.33 -59.91 -0.32 -17.95 16 18 C -0.25 -6.91 10.47 -15.06 -0.16 -7.07 16 19 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 20 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 21 N -0.93 -29.42 13.97 55.49 0.78 -28.64 16 22 Si 0.88 22.49 27.74 -169.99 -4.71 17.77 16 23 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 25 H -0.28 -6.70 6.52 56.52 0.37 -6.33 16 26 C -0.10 -1.00 3.17 -89.24 -0.28 -1.28 16 27 H 0.09 0.86 7.85 -51.93 -0.41 0.45 16 28 C -0.14 -1.23 8.90 37.16 0.33 -0.90 16 29 C 0.10 0.90 6.38 -2.98 -0.02 0.88 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.57 7.91 -51.93 -0.41 0.16 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.51 6.43 -51.93 -0.33 0.18 16 38 H 0.08 0.73 8.03 -51.93 -0.42 0.32 16 39 H 0.08 1.46 7.85 -51.93 -0.41 1.05 16 40 H 0.08 1.17 7.95 -51.92 -0.41 0.76 16 41 H 0.03 0.54 8.00 -51.93 -0.42 0.13 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.36 8.38 5.53 -40.82 -0.23 8.15 16 44 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 45 H 0.05 0.48 8.13 -51.93 -0.42 0.06 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 49 H 0.08 0.53 4.96 -51.93 -0.26 0.27 16 LS Contribution 381.62 15.07 5.75 5.75 Total: -1.00 -33.61 381.62 -8.57 -42.18 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -8.74 Total: 4.32 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -0.48 Total: -1.70 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: -0.10 Total: -54.80 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -0.29 Total: -13.53 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.71 Total: 17.77 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.61 -8.57 -42.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106456774.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.971 kcal (2) G-P(sol) polarization free energy of solvation -33.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds