Wall clock time and date at job start Tue Mar 31 2020 10:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08999 * 110.27632 * 55.63155 * 3 2 1 5 5 O 1.43643 * 110.30639 * 293.54292 * 3 2 1 6 6 C 1.43238 * 109.97249 * 216.65714 * 5 3 2 7 7 C 1.54384 * 107.58879 * 1.71441 * 6 5 3 8 8 C 1.54943 * 110.31006 * 177.83444 * 3 2 1 9 9 H 1.09003 * 111.12605 * 37.43613 * 8 3 2 10 10 C 1.50703 * 111.12492 * 273.27707 * 8 3 2 11 11 O 1.21284 * 119.99909 * 359.97438 * 10 8 3 12 12 N 1.34772 * 120.00252 * 180.02562 * 10 8 3 13 13 C 1.48115 * 127.03423 * 179.70567 * 12 10 8 14 14 C 1.54597 * 103.42419 * 219.28612 * 13 12 10 15 15 H 1.09001 * 110.57540 * 81.17590 * 14 13 12 16 16 C 1.53006 * 110.98838 * 204.37328 * 14 13 12 17 17 N 1.46493 * 109.47200 * 288.65306 * 16 14 13 18 18 C 1.36941 * 120.00024 * 179.97438 * 17 16 14 19 19 H 1.08002 * 119.99904 * 0.02562 * 18 17 16 20 20 C 1.38806 * 120.00112 * 179.97438 * 18 17 16 21 21 N 1.31622 * 120.00233 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 120.00070 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.46939 * 90.00041 * 22 20 18 24 24 H 1.48499 * 109.47117 * 210.00008 * 22 20 18 25 25 H 1.48494 * 109.47004 * 329.99793 * 22 20 18 26 26 C 1.54622 * 102.91177 * 322.86834 * 14 13 12 27 27 H 1.08996 * 110.32488 * 262.80116 * 26 14 13 28 28 C 1.53005 * 110.40849 * 140.63360 * 26 14 13 29 29 C 1.47486 * 127.03277 * 0.02656 * 12 10 8 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 33 33 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 34 34 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 35 35 H 1.09000 * 109.83020 * 121.22678 * 6 5 3 36 36 H 1.08998 * 109.83279 * 242.19998 * 6 5 3 37 37 H 1.08993 * 110.85074 * 139.54829 * 7 6 5 38 38 H 1.09000 * 110.84504 * 263.16967 * 7 6 5 39 39 H 1.09001 * 110.66367 * 337.77142 * 13 12 10 40 40 H 1.09010 * 110.66244 * 100.88998 * 13 12 10 41 41 H 1.09002 * 109.46741 * 48.66033 * 16 14 13 42 42 H 1.08999 * 109.46917 * 168.65309 * 16 14 13 43 43 H 0.97004 * 120.00201 * 359.97438 * 17 16 14 44 44 H 0.97000 * 120.00147 * 180.02562 * 21 20 18 45 45 H 1.08992 * 109.47299 * 302.87502 * 28 26 14 46 46 H 1.08995 * 109.47093 * 62.87773 * 28 26 14 47 47 H 1.09000 * 109.46716 * 182.87326 * 28 26 14 48 48 H 1.09006 * 109.91256 * 273.87100 * 29 12 10 49 49 H 1.09000 * 109.91467 * 34.95975 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6217 1.9911 0.8440 5 8 1.6988 2.0919 -1.2350 6 6 2.7561 2.9725 -1.6331 7 6 3.8856 2.8476 -0.5881 8 6 3.5883 1.4656 0.0549 9 1 4.0145 0.6564 -0.5382 10 6 4.0822 1.4110 1.4777 11 8 3.2887 1.3581 2.3934 12 7 5.4055 1.4220 1.7325 13 6 6.0585 1.3804 3.0613 14 6 7.2461 2.3582 2.9085 15 1 6.9127 3.3884 3.0340 16 6 8.3605 2.0266 3.9031 17 7 7.9299 2.3857 5.2565 18 6 8.7678 2.1776 6.3194 19 1 9.7463 1.7492 6.1599 20 6 8.3600 2.5183 7.6018 21 7 9.1656 2.3188 8.6234 22 14 6.6679 3.2599 7.8776 23 1 5.6852 2.1736 8.1216 24 1 6.7095 4.1635 9.0554 25 1 6.2639 4.0321 6.6753 26 6 7.7154 2.1075 1.4567 27 1 8.5569 1.4148 1.4451 28 6 8.1048 3.4267 0.7865 29 6 6.4997 1.4847 0.7456 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.1280 2.6831 -2.6160 36 1 2.3911 3.9991 -1.6621 37 1 4.8628 2.8486 -1.0711 38 1 3.8175 3.6433 0.1537 39 1 5.3746 1.7253 3.8369 40 1 6.4169 0.3749 3.2824 41 1 8.5783 0.9594 3.8621 42 1 9.2570 2.5905 3.6455 43 1 7.0512 2.7708 5.3998 44 1 8.8805 2.5565 9.5195 45 1 7.2587 4.1130 0.8163 46 1 8.9493 3.8678 1.3161 47 1 8.3841 3.2389 -0.2502 48 1 6.7461 0.4806 0.4002 49 1 6.2022 2.1053 -0.0997 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106456774.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:43 Heat of formation + Delta-G solvation = -100.749967 kcal Electronic energy + Delta-G solvation = -26934.088736 eV Core-core repulsion = 23280.977442 eV Total energy + Delta-G solvation = -3653.111294 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.77720 -40.27994 -38.89718 -36.64465 -34.57616 -34.38095 -33.40681 -33.20652 -30.97956 -29.47711 -27.54365 -27.26161 -25.16249 -24.37981 -23.37781 -22.39204 -21.92462 -21.19200 -20.36047 -19.62243 -18.54897 -17.49330 -17.23025 -16.85980 -16.55362 -16.24935 -15.93215 -15.53909 -15.25406 -15.01750 -14.91499 -14.80779 -14.49917 -14.23189 -14.12708 -14.07593 -13.79603 -13.64305 -13.27054 -13.20459 -12.98954 -12.87288 -12.68571 -12.52282 -12.41558 -12.13177 -11.96103 -11.89233 -11.81173 -11.77582 -11.66786 -11.55659 -11.50383 -11.03084 -10.95812 -10.48923 -9.77526 -9.32315 -8.06477 -5.38879 1.33202 1.35947 1.41617 1.44897 1.79706 2.43357 2.71138 3.23443 3.26068 3.38298 3.53424 3.54595 3.61497 3.77494 3.92583 4.02781 4.09082 4.15097 4.16488 4.22197 4.31786 4.38952 4.46324 4.48892 4.52625 4.61913 4.74578 4.78244 4.81237 4.82630 4.83757 4.87478 4.94939 4.99631 5.04498 5.05012 5.09569 5.19730 5.22161 5.23491 5.35434 5.36694 5.53395 5.73546 6.00063 6.18271 6.47091 7.00176 7.04578 7.81696 7.97969 9.15125 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.016977 B = 0.003395 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.914378 B = 8245.348688 C = 9253.067118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.119 4.119 3 C 0.100 3.900 4 H 0.055 0.945 5 O -0.391 6.391 6 C 0.048 3.952 7 C -0.139 4.139 8 C -0.130 4.130 9 H 0.138 0.862 10 C 0.537 3.463 11 O -0.586 6.586 12 N -0.615 5.615 13 C 0.110 3.890 14 C -0.097 4.097 15 H 0.073 0.927 16 C 0.167 3.833 17 N -0.762 5.762 18 C -0.230 4.230 19 H 0.063 0.937 20 C -0.059 4.059 21 N -0.982 5.982 22 Si 0.946 3.054 23 H -0.283 1.283 24 H -0.292 1.292 25 H -0.258 1.258 26 C -0.091 4.091 27 H 0.102 0.898 28 C -0.140 4.140 29 C 0.099 3.901 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.042 0.958 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.124 0.876 38 H 0.068 0.932 39 H 0.050 0.950 40 H 0.075 0.925 41 H 0.033 0.967 42 H 0.036 0.964 43 H 0.362 0.638 44 H 0.258 0.742 45 H 0.053 0.947 46 H 0.052 0.948 47 H 0.085 0.915 48 H 0.091 0.909 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.443 -0.891 -29.535 31.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.156 4.156 3 C 0.043 3.957 4 H 0.073 0.927 5 O -0.311 6.311 6 C -0.028 4.028 7 C -0.176 4.176 8 C -0.151 4.151 9 H 0.156 0.844 10 C 0.326 3.674 11 O -0.466 6.466 12 N -0.348 5.348 13 C -0.013 4.013 14 C -0.117 4.117 15 H 0.092 0.908 16 C 0.041 3.959 17 N -0.407 5.407 18 C -0.361 4.361 19 H 0.081 0.919 20 C -0.251 4.251 21 N -0.632 5.632 22 Si 0.774 3.226 23 H -0.210 1.210 24 H -0.219 1.219 25 H -0.183 1.183 26 C -0.111 4.111 27 H 0.120 0.880 28 C -0.197 4.197 29 C -0.022 4.022 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.116 0.884 36 H 0.094 0.906 37 H 0.142 0.858 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.051 0.949 42 H 0.054 0.946 43 H 0.195 0.805 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.104 0.896 48 H 0.109 0.891 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -10.949 -1.018 -29.128 31.134 hybrid contribution -0.604 0.495 1.640 1.817 sum -11.553 -0.523 -27.487 29.821 Atomic orbital electron populations 1.21667 0.94849 1.02145 1.01648 1.21631 0.97413 0.93907 1.02650 1.22715 0.91569 0.94668 0.86789 0.92737 1.88412 1.42987 1.59996 1.39672 1.23316 0.86409 0.94642 0.98434 1.23190 1.02059 0.93906 0.98491 1.23000 0.97361 1.02387 0.92393 0.84408 1.20391 0.80403 0.75162 0.91403 1.90722 1.55121 1.52288 1.48502 1.48871 1.05040 1.71743 1.09111 1.22361 0.93712 0.99950 0.85257 1.22398 0.94301 0.98947 0.96052 0.90830 1.20795 0.95221 0.97809 0.82110 1.42819 1.17107 1.77035 1.03757 1.19063 0.97534 1.33086 0.86405 0.91855 1.25398 1.01539 1.02782 0.95403 1.69858 1.38230 1.56005 0.99154 0.85543 0.80850 0.78537 0.77650 1.20989 1.21879 1.18296 1.22088 0.97900 0.99474 0.91594 0.88025 1.21838 1.01423 0.95022 1.01398 1.22621 0.85016 1.02871 0.91719 0.91515 0.92104 0.93882 0.91782 0.89744 0.88412 0.90612 0.85790 0.91368 0.93126 0.90648 0.94906 0.94583 0.80536 0.93307 0.92795 0.92889 0.89574 0.89051 0.87660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.83 71.98 0.71 -1.96 16 2 C -0.12 -2.25 5.68 30.60 0.17 -2.08 16 3 C 0.10 2.09 2.57 31.26 0.08 2.17 16 4 H 0.05 1.47 7.38 -2.39 -0.02 1.45 16 5 O -0.39 -7.52 10.69 -148.98 -1.59 -9.11 16 6 C 0.05 0.58 7.79 72.45 0.56 1.15 16 7 C -0.14 -1.65 5.80 31.86 0.18 -1.47 16 8 C -0.13 -2.19 2.27 -10.08 -0.02 -2.22 16 9 H 0.14 1.61 8.06 -2.39 -0.02 1.59 16 10 C 0.54 13.69 7.23 87.66 0.63 14.32 16 11 O -0.59 -20.88 15.93 -3.04 -0.05 -20.93 16 12 N -0.62 -14.02 3.29 -810.07 -2.67 -16.69 16 13 C 0.11 3.20 6.44 86.61 0.56 3.76 16 14 C -0.10 -2.59 2.60 -9.70 -0.03 -2.61 16 15 H 0.07 2.12 7.86 -2.39 -0.02 2.10 16 16 C 0.17 5.84 5.58 86.38 0.48 6.33 16 17 N -0.76 -35.46 5.33 -343.46 -1.83 -37.29 16 18 C -0.23 -13.13 10.47 84.03 0.88 -12.25 16 19 H 0.06 3.90 8.06 -2.91 -0.02 3.88 16 20 C -0.06 -3.56 5.50 84.86 0.47 -3.10 16 21 N -0.98 -63.55 13.97 21.65 0.30 -63.25 16 22 Si 0.95 47.25 27.74 68.60 1.90 49.15 16 23 H -0.28 -14.10 7.11 99.48 0.71 -13.39 16 24 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 25 H -0.26 -11.87 6.52 99.48 0.65 -11.22 16 26 C -0.09 -1.50 3.17 -9.90 -0.03 -1.54 16 27 H 0.10 1.52 7.85 -2.39 -0.02 1.50 16 28 C -0.14 -1.85 8.90 71.98 0.64 -1.21 16 29 C 0.10 1.34 6.38 86.53 0.55 1.89 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.06 1.09 7.91 -2.39 -0.02 1.08 16 32 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 33 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.12 0.65 6.43 -2.39 -0.02 0.64 16 38 H 0.07 1.05 8.03 -2.39 -0.02 1.03 16 39 H 0.05 1.80 7.85 -2.39 -0.02 1.78 16 40 H 0.08 2.22 7.95 -2.38 -0.02 2.20 16 41 H 0.03 1.15 8.00 -2.39 -0.02 1.13 16 42 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.36 16.68 5.53 -92.71 -0.51 16.16 16 44 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 45 H 0.05 0.74 8.13 -2.39 -0.02 0.72 16 46 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 49 H 0.11 0.84 4.96 -2.39 -0.01 0.83 16 Total: -1.00 -76.79 381.62 2.26 -74.53 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: 0.35 Total: 22.39 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: 5.85 Total: 1.19 kcal Atomic # 7 Polarization: -113.03 SS G_CDS: -4.19 Total: -117.23 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -1.64 Total: -30.04 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 1.90 Total: 49.15 kcal Total: -76.79 2.26 -74.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106456774.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.216 kcal (2) G-P(sol) polarization free energy of solvation -76.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds