Wall clock time and date at job start Tue Mar 31 2020 10:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42894 * 114.00155 * 2 1 4 4 C 1.53004 * 109.46783 * 179.97438 * 3 2 1 5 5 C 1.53009 * 109.46922 * 183.49445 * 4 3 2 6 6 N 1.46496 * 109.46022 * 303.39940 * 5 4 3 7 7 C 1.34779 * 119.99944 * 299.43467 * 6 5 4 8 8 O 1.21612 * 120.00211 * 354.10051 * 7 6 5 9 9 C 1.47105 * 119.99765 * 174.10384 * 7 6 5 10 10 C 1.32990 * 119.99889 * 211.11105 * 9 7 6 11 11 C 1.50698 * 120.00133 * 3.12527 * 10 9 7 12 12 C 1.50699 * 120.00025 * 183.13511 * 10 9 7 13 13 C 1.53042 * 109.44624 * 63.36753 * 5 4 3 14 14 C 1.53195 * 109.31026 * 181.38005 * 13 5 4 15 15 N 1.46931 * 108.77245 * 305.36079 * 14 13 5 16 16 C 1.36932 * 120.63168 * 233.62981 * 15 14 13 17 17 H 1.08006 * 119.99675 * 30.48272 * 16 15 14 18 18 C 1.38810 * 120.00064 * 210.48306 * 16 15 14 19 19 N 1.31615 * 120.00105 * 12.50868 * 18 16 15 20 20 Si 1.86804 * 119.99856 * 192.51273 * 18 16 15 21 21 H 1.48497 * 109.47127 * 59.99765 * 20 18 16 22 22 H 1.48501 * 109.47049 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47047 * 299.99585 * 20 18 16 24 24 C 1.46927 * 118.73675 * 53.61305 * 15 14 13 25 25 C 1.53038 * 109.45600 * 183.42503 * 5 4 3 26 26 H 1.09000 * 109.46759 * 300.00427 * 1 2 3 27 27 H 1.09001 * 109.47117 * 59.99720 * 1 2 3 28 28 H 1.08994 * 109.47363 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46977 * 60.00314 * 3 2 1 30 30 H 1.08998 * 109.47285 * 299.99595 * 3 2 1 31 31 H 1.09000 * 109.47218 * 63.49907 * 4 3 2 32 32 H 1.09001 * 109.47594 * 303.49320 * 4 3 2 33 33 H 0.97000 * 119.99714 * 119.15874 * 6 5 4 34 34 H 1.08002 * 119.99933 * 31.10901 * 9 7 6 35 35 H 1.08999 * 109.47253 * 3.91688 * 11 10 9 36 36 H 1.08998 * 109.46935 * 123.90948 * 11 10 9 37 37 H 1.08996 * 109.47552 * 243.91329 * 11 10 9 38 38 H 1.08993 * 109.47683 * 89.99550 * 12 10 9 39 39 H 1.09004 * 109.47138 * 209.99890 * 12 10 9 40 40 H 1.09005 * 109.47060 * 329.99502 * 12 10 9 41 41 H 1.09003 * 109.49802 * 301.32772 * 13 5 4 42 42 H 1.09000 * 109.50033 * 61.42810 * 13 5 4 43 43 H 1.09000 * 109.58441 * 185.57992 * 14 13 5 44 44 H 1.08997 * 109.58826 * 65.14976 * 14 13 5 45 45 H 0.97006 * 119.99765 * 180.02562 * 19 18 16 46 46 H 1.09007 * 109.58454 * 186.60217 * 24 15 14 47 47 H 1.09000 * 109.70329 * 66.24564 * 24 15 14 48 48 H 1.08991 * 109.50277 * 298.57480 * 25 5 4 49 49 H 1.08995 * 109.50011 * 58.68191 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1844 0.0006 5 6 4.1577 2.5796 0.0886 6 7 3.6675 3.4032 -1.0193 7 6 3.9051 3.0306 -2.2926 8 8 4.6162 2.0713 -2.5228 9 6 3.3043 3.7844 -3.4038 10 6 2.9898 3.1620 -4.5362 11 6 3.1833 1.6723 -4.6561 12 6 2.4401 3.9464 -5.6996 13 6 3.7671 3.2287 1.4183 14 6 4.3630 4.6383 1.4882 15 7 5.8121 4.5508 1.2621 16 6 6.6923 5.0974 2.1575 17 1 6.4346 5.1490 3.2051 18 6 7.9156 5.5850 1.7187 19 7 8.1345 5.7513 0.4316 20 14 9.2513 6.0052 2.9552 21 1 9.6069 4.7904 3.7317 22 1 10.4522 6.5022 2.2369 23 1 8.7567 7.0567 3.8800 24 6 6.2989 3.8654 0.0571 25 6 5.6813 2.4645 0.0032 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6887 1.8463 0.8900 30 1 1.6887 1.8463 -0.8900 31 1 3.8618 0.6984 -0.9188 32 1 3.8526 0.5906 0.8579 33 1 3.1685 4.2147 -0.8365 34 1 3.1186 4.8432 -3.3000 35 1 3.5208 1.2716 -3.7002 36 1 2.2387 1.2043 -4.9329 37 1 3.9304 1.4633 -5.4217 38 1 3.2621 4.2875 -6.3287 39 1 1.7746 3.3111 -6.2842 40 1 1.8857 4.8079 -5.3274 41 1 2.6810 3.2890 1.4886 42 1 4.1529 2.6294 2.2430 43 1 4.1719 5.0674 2.4718 44 1 3.9104 5.2649 0.7197 45 1 8.9895 6.0918 0.1251 46 1 7.3853 3.7846 0.0964 47 1 6.0062 4.4282 -0.8294 48 1 6.0491 1.8725 0.8412 49 1 5.9578 1.9809 -0.9337 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150937402.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:14 Heat of formation + Delta-G solvation = -64.525616 kcal Electronic energy + Delta-G solvation = -27847.631475 eV Core-core repulsion = 24196.090987 eV Total energy + Delta-G solvation = -3651.540488 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.66631 -39.32476 -38.60275 -36.56458 -35.88228 -33.66010 -32.95897 -31.76867 -30.43201 -28.76455 -28.54557 -27.58947 -26.37950 -24.64200 -23.78530 -22.81134 -21.88559 -20.13606 -19.69101 -18.66644 -17.80805 -17.45938 -17.03765 -16.81440 -16.35921 -16.15933 -15.69730 -15.52516 -15.34372 -15.05350 -14.91220 -14.82402 -14.53283 -14.24507 -13.92320 -13.68449 -13.33676 -13.19981 -13.12803 -13.00176 -12.82254 -12.71129 -12.61290 -12.52357 -12.34560 -12.28832 -12.16871 -12.05470 -11.93083 -11.77663 -11.31692 -11.19872 -10.57602 -10.52783 -10.22764 -10.01316 -9.73182 -8.60675 -7.84515 -5.34256 0.57190 1.45947 1.48968 1.54968 2.26735 2.41423 2.51834 2.82464 3.31214 3.70974 3.72467 3.92745 3.99339 4.04895 4.13247 4.19091 4.34687 4.41280 4.46767 4.54556 4.55014 4.59642 4.61674 4.69974 4.71724 4.76984 4.81354 4.84643 4.90665 4.91100 5.01070 5.05254 5.08320 5.13738 5.18083 5.21996 5.33784 5.37119 5.52378 5.61352 5.64938 5.71412 5.77130 5.83321 6.26432 6.41809 6.77116 7.17252 7.44980 7.88706 8.40970 9.20507 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.013337 B = 0.004505 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.874555 B = 6214.323873 C = 7678.980744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.075 3.925 4 C -0.117 4.117 5 C 0.202 3.798 6 N -0.704 5.704 7 C 0.544 3.456 8 O -0.566 6.566 9 C -0.246 4.246 10 C -0.036 4.036 11 C -0.154 4.154 12 C -0.121 4.121 13 C -0.127 4.127 14 C 0.142 3.858 15 N -0.607 5.607 16 C -0.263 4.263 17 H 0.069 0.931 18 C -0.050 4.050 19 N -0.936 5.936 20 Si 0.966 3.034 21 H -0.280 1.280 22 H -0.297 1.297 23 H -0.272 1.272 24 C 0.198 3.802 25 C -0.140 4.140 26 H 0.053 0.947 27 H 0.046 0.954 28 H 0.096 0.904 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.407 0.593 34 H 0.143 0.857 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.097 0.903 42 H 0.072 0.928 43 H 0.060 0.940 44 H 0.024 0.976 45 H 0.247 0.753 46 H 0.039 0.961 47 H -0.006 1.006 48 H 0.050 0.950 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.808 -6.152 -6.700 20.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C -0.002 4.002 4 C -0.156 4.156 5 C 0.116 3.884 6 N -0.355 5.355 7 C 0.335 3.665 8 O -0.448 6.448 9 C -0.266 4.266 10 C -0.038 4.038 11 C -0.210 4.210 12 C -0.178 4.178 13 C -0.166 4.166 14 C 0.017 3.983 15 N -0.331 5.331 16 C -0.393 4.393 17 H 0.086 0.914 18 C -0.245 4.245 19 N -0.582 5.582 20 Si 0.794 3.206 21 H -0.206 1.206 22 H -0.224 1.224 23 H -0.197 1.197 24 C 0.072 3.928 25 C -0.179 4.179 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.115 0.885 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.243 0.757 34 H 0.160 0.840 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.115 0.885 42 H 0.090 0.910 43 H 0.079 0.921 44 H 0.042 0.958 45 H 0.056 0.944 46 H 0.058 0.942 47 H 0.012 0.988 48 H 0.069 0.931 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.087 -6.911 -6.886 20.550 hybrid contribution 1.035 0.996 0.522 1.528 sum -17.052 -5.915 -6.364 19.138 Atomic orbital electron populations 1.22915 0.79531 1.03740 1.00815 1.87837 1.21528 1.28884 1.95586 1.22461 0.92777 0.84220 1.00696 1.21767 0.94308 0.96473 1.03055 1.19971 0.92427 0.89443 0.86576 1.45971 1.56801 1.27755 1.04949 1.18949 0.80115 0.83724 0.83743 1.90604 1.38767 1.30673 1.84749 1.22498 1.08483 1.01081 0.94567 1.22676 0.90846 0.96462 0.93805 1.21438 1.02299 0.92368 1.04919 1.21004 1.01661 0.99936 0.95173 1.22285 1.01357 0.97755 0.95199 1.21066 0.83765 0.94428 0.99086 1.44237 1.01117 1.63603 1.24095 1.19499 0.97919 1.32260 0.89613 0.91379 1.25869 1.02016 0.99348 0.97299 1.70170 1.23668 1.49919 1.14435 0.85368 0.78585 0.78177 0.78461 1.20609 1.22358 1.19727 1.20268 0.96958 0.88583 0.87022 1.22400 0.95652 0.98945 1.00953 0.92880 0.93542 0.88549 0.91567 0.93466 0.91955 0.90829 0.75692 0.83973 0.90433 0.90301 0.90930 0.89891 0.89704 0.89989 0.88509 0.90952 0.92148 0.95790 0.94398 0.94224 0.98837 0.93104 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 113.37 1.25 1.69 16 2 O -0.42 -10.87 10.70 -148.98 -1.59 -12.46 16 3 C 0.07 1.85 5.49 71.98 0.40 2.25 16 4 C -0.12 -3.57 4.37 30.60 0.13 -3.43 16 5 C 0.20 6.62 0.35 3.63 0.00 6.62 16 6 N -0.70 -21.33 3.25 -426.35 -1.38 -22.71 16 7 C 0.54 17.75 6.56 86.57 0.57 18.32 16 8 O -0.57 -22.05 10.15 -4.07 -0.04 -22.09 16 9 C -0.25 -6.35 9.61 23.43 0.23 -6.13 16 10 C -0.04 -0.81 6.10 -17.62 -0.11 -0.91 16 11 C -0.15 -3.70 9.58 71.24 0.68 -3.02 16 12 C -0.12 -1.77 10.05 71.24 0.72 -1.05 16 13 C -0.13 -3.83 4.71 30.67 0.14 -3.69 16 14 C 0.14 5.37 6.24 86.36 0.54 5.91 16 15 N -0.61 -30.10 2.99 -699.06 -2.09 -32.19 16 16 C -0.26 -14.42 9.58 84.03 0.81 -13.61 16 17 H 0.07 3.59 7.86 -2.91 -0.02 3.57 16 18 C -0.05 -2.83 5.01 84.86 0.43 -2.41 16 19 N -0.94 -56.80 11.09 21.65 0.24 -56.56 16 20 Si 0.97 45.54 29.57 68.60 2.03 47.57 16 21 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 22 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 23 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 24 C 0.20 10.04 5.01 86.36 0.43 10.47 16 25 C -0.14 -5.90 4.65 30.67 0.14 -5.76 16 26 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.10 1.35 8.14 -2.39 -0.02 1.34 16 29 H 0.07 1.41 6.32 -2.39 -0.02 1.39 16 30 H 0.05 1.15 7.57 -2.39 -0.02 1.13 16 31 H 0.06 2.21 6.51 -2.39 -0.02 2.19 16 32 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.41 10.65 7.28 -92.71 -0.67 9.98 16 34 H 0.14 3.10 8.05 -2.91 -0.02 3.08 16 35 H 0.08 2.40 4.65 -3.33 -0.02 2.39 16 36 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.08 0.96 8.12 -2.38 -0.02 0.94 16 40 H 0.08 1.00 8.07 -2.38 -0.02 0.98 16 41 H 0.10 2.19 6.38 -2.39 -0.02 2.18 16 42 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.06 2.22 7.93 -2.39 -0.02 2.20 16 44 H 0.02 0.88 6.95 -2.39 -0.02 0.86 16 45 H 0.25 14.67 8.31 -92.70 -0.77 13.90 16 46 H 0.04 2.35 6.09 -2.38 -0.01 2.33 16 47 H -0.01 -0.35 7.74 -2.39 -0.02 -0.37 16 48 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 49 H 0.06 2.86 5.98 -2.39 -0.01 2.84 16 Total: -1.00 -70.81 374.50 3.76 -67.04 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: 0.25 Total: 26.14 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: 6.35 Total: 5.25 kcal Atomic # 7 Polarization: -108.23 SS G_CDS: -3.23 Total: -111.46 kcal Atomic # 8 Polarization: -32.92 SS G_CDS: -1.64 Total: -34.55 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -70.81 3.76 -67.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150937402.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.519 kcal (2) G-P(sol) polarization free energy of solvation -70.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds