Wall clock time and date at job start Tue Mar 31 2020 09:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47171 * 2 1 4 4 C 1.53005 * 109.46829 * 180.02562 * 3 2 1 5 5 O 1.42902 * 109.46843 * 179.97438 * 4 3 2 6 6 C 1.42895 * 113.99723 * 180.02562 * 5 4 3 7 7 C 1.50705 * 109.47297 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99675 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00468 * 179.97438 * 7 6 5 10 10 C 1.46499 * 120.00155 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.46956 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.46898 * 179.97438 * 11 10 9 13 13 C 1.29453 * 117.69778 * 95.00126 * 12 11 10 14 14 C 1.50314 * 123.65486 * 181.13771 * 13 12 11 15 15 N 1.47126 * 109.10610 * 348.54061 * 14 13 12 16 16 C 1.36937 * 121.53633 * 223.15752 * 15 14 13 17 17 H 1.07997 * 119.99691 * 156.35057 * 16 15 14 18 18 C 1.38812 * 119.99919 * 336.35140 * 16 15 14 19 19 N 1.31617 * 120.00056 * 344.28136 * 18 16 15 20 20 Si 1.86801 * 120.00087 * 164.27882 * 18 16 15 21 21 H 1.48495 * 109.46836 * 94.57576 * 20 18 16 22 22 H 1.48492 * 109.47207 * 214.57842 * 20 18 16 23 23 H 1.48505 * 109.46960 * 334.57989 * 20 18 16 24 24 C 1.47346 * 117.08841 * 43.37697 * 15 14 13 25 25 C 1.49970 * 117.69333 * 275.01852 * 12 11 10 26 26 H 1.08998 * 109.47305 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46744 * 299.99888 * 1 2 3 28 28 H 1.09001 * 109.46800 * 60.00309 * 1 2 3 29 29 H 1.08999 * 109.46648 * 239.99336 * 2 1 3 30 30 H 1.09002 * 109.46768 * 120.00245 * 2 1 3 31 31 H 1.08992 * 109.47532 * 60.00109 * 3 2 1 32 32 H 1.09001 * 109.47006 * 299.99564 * 3 2 1 33 33 H 1.08997 * 109.47047 * 60.00136 * 4 3 2 34 34 H 1.09001 * 109.46839 * 299.99506 * 4 3 2 35 35 H 1.08996 * 109.47530 * 60.00224 * 6 5 4 36 36 H 1.09008 * 109.47120 * 299.99579 * 6 5 4 37 37 H 0.97005 * 119.99630 * 0.02562 * 9 7 6 38 38 H 1.08996 * 109.46889 * 60.00251 * 10 9 7 39 39 H 1.09008 * 109.46764 * 300.00217 * 10 9 7 40 40 H 1.09003 * 109.47322 * 59.99823 * 11 10 9 41 41 H 1.08999 * 109.47397 * 299.99550 * 11 10 9 42 42 H 1.07999 * 118.16688 * 0.85284 * 13 12 11 43 43 H 1.09007 * 109.52348 * 108.64837 * 14 13 12 44 44 H 1.09001 * 109.52266 * 228.83155 * 14 13 12 45 45 H 0.97002 * 120.00389 * 180.02562 * 19 18 16 46 46 H 1.08993 * 109.77660 * 178.40331 * 24 15 14 47 47 H 1.09000 * 109.77612 * 57.59524 * 24 15 14 48 48 H 1.09000 * 109.31771 * 281.29104 * 25 12 11 49 49 H 1.09004 * 109.31612 * 40.71818 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 8 4.0465 2.7897 -0.0012 6 6 5.4710 2.9024 -0.0025 7 6 5.8597 4.3585 -0.0024 8 8 5.0013 5.2152 -0.0009 9 7 7.1611 4.7086 -0.0029 10 6 7.5389 6.1240 -0.0034 11 6 9.0641 6.2447 -0.0046 12 6 9.4528 7.7008 -0.0057 13 6 9.7053 8.2570 1.1356 14 6 10.0801 9.7042 1.2922 15 7 10.3739 10.2717 -0.0330 16 6 11.4493 11.0944 -0.2375 17 1 11.8740 11.1923 -1.2256 18 6 11.9936 11.8023 0.8252 19 7 11.3138 11.9352 1.9444 20 14 13.6908 12.5665 0.6671 21 1 13.5582 13.9828 0.2410 22 1 14.3847 12.5069 1.9785 23 1 14.4787 11.8171 -0.3444 24 6 9.4570 9.9204 -1.1316 25 6 9.5193 8.4034 -1.3289 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6768 1.9563 0.8899 32 1 1.6768 1.9563 -0.8900 33 1 3.9330 0.9287 -0.8909 34 1 3.9337 0.9284 0.8892 35 1 5.8730 2.4188 -0.8927 36 1 5.8745 2.4190 0.8874 37 1 7.8477 4.0233 -0.0037 38 1 7.1365 6.6077 0.8866 39 1 7.1358 6.6073 -0.8934 40 1 9.4663 5.7610 -0.8948 41 1 9.4676 5.7614 0.8852 42 1 9.6386 7.6484 2.0253 43 1 9.2531 10.2473 1.7497 44 1 10.9642 9.7852 1.9246 45 1 11.6939 12.4302 2.6870 46 1 9.7676 10.4244 -2.0467 47 1 8.4406 10.2173 -0.8729 48 1 10.4521 8.1429 -1.8290 49 1 8.6806 8.0856 -1.9484 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159651430.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:25:05 Heat of formation + Delta-G solvation = -65.554779 kcal Electronic energy + Delta-G solvation = -24666.059853 eV Core-core repulsion = 21014.474736 eV Total energy + Delta-G solvation = -3651.585116 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -39.92718 -38.25370 -37.76483 -35.49516 -35.21758 -33.56776 -31.47750 -30.31186 -29.79676 -28.97612 -27.37746 -25.12239 -23.70083 -23.00524 -22.44004 -21.60359 -21.00759 -20.57364 -17.62670 -17.38702 -17.04438 -16.94780 -16.04424 -15.81958 -15.43178 -15.12937 -14.85051 -14.72550 -14.07850 -14.02072 -13.79983 -13.58781 -13.38517 -13.26971 -13.01640 -12.59910 -12.30188 -12.20681 -11.99004 -11.91684 -11.55830 -11.54569 -11.40979 -11.36633 -11.08730 -10.99175 -10.89955 -10.70571 -10.31119 -10.25762 -10.07295 -9.91577 -9.78750 -9.52295 -9.16129 -8.63693 -7.90898 -6.70827 -5.76852 -3.15042 2.47733 2.53871 2.97447 3.38947 3.45822 3.48187 3.64905 4.45893 4.45982 4.51476 4.60667 4.67803 4.74172 4.77472 4.88022 4.94830 5.11540 5.14647 5.18619 5.28330 5.35393 5.37288 5.41813 5.45836 5.57219 5.65769 5.68435 5.79585 5.80466 5.87471 6.01711 6.05521 6.16327 6.22836 6.32258 6.42087 6.57605 6.69370 6.81231 6.92966 7.24961 7.31757 7.36516 7.43209 7.76906 7.90037 8.09158 8.40943 9.22432 9.85521 10.44585 11.33633 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.051067 B = 0.001683 C = 0.001679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.172386 B =16632.646133 C =16672.608889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.120 4.120 4 C 0.060 3.940 5 O -0.364 6.364 6 C 0.045 3.955 7 C 0.509 3.491 8 O -0.518 6.518 9 N -0.729 5.729 10 C 0.125 3.875 11 C -0.091 4.091 12 C -0.143 4.143 13 C -0.145 4.145 14 C 0.196 3.804 15 N -0.595 5.595 16 C -0.245 4.245 17 H 0.068 0.932 18 C -0.002 4.002 19 N -0.909 5.909 20 Si 0.904 3.096 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.142 3.858 25 C -0.091 4.091 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.399 0.601 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.038 0.962 44 H 0.091 0.909 45 H 0.253 0.747 46 H 0.056 0.944 47 H 0.024 0.976 48 H 0.062 0.938 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.154 -25.745 -3.563 29.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.158 4.158 4 C -0.017 4.017 5 O -0.282 6.282 6 C -0.035 4.035 7 C 0.294 3.706 8 O -0.392 6.392 9 N -0.383 5.383 10 C 0.003 3.997 11 C -0.129 4.129 12 C -0.144 4.144 13 C -0.165 4.165 14 C 0.071 3.929 15 N -0.319 5.319 16 C -0.374 4.374 17 H 0.086 0.914 18 C -0.200 4.200 19 N -0.555 5.555 20 Si 0.734 3.266 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.015 3.985 25 C -0.130 4.130 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.233 0.767 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.109 0.891 43 H 0.056 0.944 44 H 0.109 0.891 45 H 0.063 0.937 46 H 0.074 0.926 47 H 0.042 0.958 48 H 0.080 0.920 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.858 -24.838 -3.417 28.646 hybrid contribution 1.477 -0.258 0.093 1.502 sum -12.380 -25.096 -3.324 28.180 Atomic orbital electron populations 1.21757 0.95303 1.01737 1.02196 1.21441 0.96392 0.95892 1.02154 1.21553 0.93093 0.97296 1.03848 1.22617 0.95580 0.83285 1.00202 1.88022 1.18460 1.26278 1.95419 1.22190 0.84025 0.94764 1.02487 1.20232 0.82823 0.90503 0.77079 1.90759 1.49313 1.51731 1.47385 1.45991 1.06748 1.09451 1.76130 1.21459 0.95329 0.80004 1.02931 1.20905 0.93440 0.96369 1.02143 1.20224 1.04785 0.93453 0.95954 1.23118 0.97554 0.99794 0.96031 1.19728 1.00095 0.85076 0.88031 1.44171 1.28473 1.54566 1.04643 1.19188 1.04528 1.18268 0.95430 0.91388 1.24979 0.99232 0.98364 0.97409 1.70020 1.36191 1.44279 1.04997 0.86251 0.84357 0.79071 0.76950 1.21516 1.21605 1.20518 1.20962 0.93380 0.91646 0.92472 1.20758 1.00171 0.98223 0.93849 0.92597 0.92512 0.92526 0.91850 0.91841 0.90866 0.90884 0.93175 0.93158 0.90334 0.90328 0.76731 0.91175 0.91171 0.91447 0.91514 0.89075 0.94402 0.89112 0.93663 0.92550 0.95844 0.91952 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.91 37.16 0.37 -0.38 16 2 C -0.12 -0.62 5.93 -26.73 -0.16 -0.78 16 3 C -0.12 -0.84 5.58 -26.73 -0.15 -0.99 16 4 C 0.06 0.44 5.94 37.16 0.22 0.66 16 5 O -0.36 -4.07 9.88 -55.14 -0.54 -4.62 16 6 C 0.05 0.39 6.42 36.01 0.23 0.62 16 7 C 0.51 6.33 7.91 -10.98 -0.09 6.24 16 8 O -0.52 -9.18 16.50 -14.35 -0.24 -9.42 16 9 N -0.73 -7.49 5.56 -60.29 -0.33 -7.82 16 10 C 0.13 1.62 5.66 -4.04 -0.02 1.60 16 11 C -0.09 -1.15 5.32 -27.88 -0.15 -1.30 16 12 C -0.14 -2.47 5.11 -100.99 -0.52 -2.98 16 13 C -0.15 -2.82 9.47 -35.78 -0.34 -3.16 16 14 C 0.20 4.75 5.25 -5.04 -0.03 4.72 16 15 N -0.60 -15.19 3.01 -173.57 -0.52 -15.72 16 16 C -0.24 -6.79 9.71 -15.06 -0.15 -6.94 16 17 H 0.07 1.84 7.88 -52.49 -0.41 1.43 16 18 C 0.00 -0.06 5.01 -17.43 -0.09 -0.15 16 19 N -0.91 -26.53 11.07 55.49 0.61 -25.91 16 20 Si 0.90 21.81 29.58 -169.99 -5.03 16.78 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 C 0.14 3.03 6.57 -3.53 -0.02 3.01 16 25 C -0.09 -1.61 5.95 -28.18 -0.17 -1.78 16 26 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 37 H 0.40 2.66 8.47 -40.82 -0.35 2.31 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.07 1.00 8.08 -51.92 -0.42 0.58 16 40 H 0.07 0.76 8.11 -51.93 -0.42 0.34 16 41 H 0.07 0.78 7.78 -51.93 -0.40 0.37 16 42 H 0.09 1.56 7.73 -52.49 -0.41 1.15 16 43 H 0.04 0.99 8.14 -51.92 -0.42 0.57 16 44 H 0.09 2.43 6.39 -51.93 -0.33 2.10 16 45 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 46 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 47 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 49 H 0.05 0.82 8.08 -51.93 -0.42 0.40 16 LS Contribution 397.59 15.07 5.99 5.99 Total: -1.00 -33.97 397.59 -10.16 -44.13 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -9.05 Total: -1.80 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -1.05 Total: -1.61 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: -0.24 Total: -49.45 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -0.78 Total: -14.04 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.97 -10.16 -44.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159651430.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.425 kcal (2) G-P(sol) polarization free energy of solvation -33.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds