Wall clock time and date at job start Tue Mar 31 2020 09:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47171 * 2 1 4 4 C 1.53005 * 109.46829 * 180.02562 * 3 2 1 5 5 O 1.42902 * 109.46843 * 179.97438 * 4 3 2 6 6 C 1.42895 * 113.99723 * 180.02562 * 5 4 3 7 7 C 1.50705 * 109.47297 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99675 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00468 * 179.97438 * 7 6 5 10 10 C 1.46499 * 120.00155 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.46956 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.46898 * 179.97438 * 11 10 9 13 13 C 1.29453 * 117.69778 * 95.00126 * 12 11 10 14 14 C 1.50314 * 123.65486 * 181.13771 * 13 12 11 15 15 N 1.47126 * 109.10610 * 348.54061 * 14 13 12 16 16 C 1.36937 * 121.53633 * 223.15752 * 15 14 13 17 17 H 1.07997 * 119.99691 * 156.35057 * 16 15 14 18 18 C 1.38812 * 119.99919 * 336.35140 * 16 15 14 19 19 N 1.31617 * 120.00056 * 344.28136 * 18 16 15 20 20 Si 1.86801 * 120.00087 * 164.27882 * 18 16 15 21 21 H 1.48495 * 109.46836 * 94.57576 * 20 18 16 22 22 H 1.48492 * 109.47207 * 214.57842 * 20 18 16 23 23 H 1.48505 * 109.46960 * 334.57989 * 20 18 16 24 24 C 1.47346 * 117.08841 * 43.37697 * 15 14 13 25 25 C 1.49970 * 117.69333 * 275.01852 * 12 11 10 26 26 H 1.08998 * 109.47305 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46744 * 299.99888 * 1 2 3 28 28 H 1.09001 * 109.46800 * 60.00309 * 1 2 3 29 29 H 1.08999 * 109.46648 * 239.99336 * 2 1 3 30 30 H 1.09002 * 109.46768 * 120.00245 * 2 1 3 31 31 H 1.08992 * 109.47532 * 60.00109 * 3 2 1 32 32 H 1.09001 * 109.47006 * 299.99564 * 3 2 1 33 33 H 1.08997 * 109.47047 * 60.00136 * 4 3 2 34 34 H 1.09001 * 109.46839 * 299.99506 * 4 3 2 35 35 H 1.08996 * 109.47530 * 60.00224 * 6 5 4 36 36 H 1.09008 * 109.47120 * 299.99579 * 6 5 4 37 37 H 0.97005 * 119.99630 * 0.02562 * 9 7 6 38 38 H 1.08996 * 109.46889 * 60.00251 * 10 9 7 39 39 H 1.09008 * 109.46764 * 300.00217 * 10 9 7 40 40 H 1.09003 * 109.47322 * 59.99823 * 11 10 9 41 41 H 1.08999 * 109.47397 * 299.99550 * 11 10 9 42 42 H 1.07999 * 118.16688 * 0.85284 * 13 12 11 43 43 H 1.09007 * 109.52348 * 108.64837 * 14 13 12 44 44 H 1.09001 * 109.52266 * 228.83155 * 14 13 12 45 45 H 0.97002 * 120.00389 * 180.02562 * 19 18 16 46 46 H 1.08993 * 109.77660 * 178.40331 * 24 15 14 47 47 H 1.09000 * 109.77612 * 57.59524 * 24 15 14 48 48 H 1.09000 * 109.31771 * 281.29104 * 25 12 11 49 49 H 1.09004 * 109.31612 * 40.71818 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 8 4.0465 2.7897 -0.0012 6 6 5.4710 2.9024 -0.0025 7 6 5.8597 4.3585 -0.0024 8 8 5.0013 5.2152 -0.0009 9 7 7.1611 4.7086 -0.0029 10 6 7.5389 6.1240 -0.0034 11 6 9.0641 6.2447 -0.0046 12 6 9.4528 7.7008 -0.0057 13 6 9.7053 8.2570 1.1356 14 6 10.0801 9.7042 1.2922 15 7 10.3739 10.2717 -0.0330 16 6 11.4493 11.0944 -0.2375 17 1 11.8740 11.1923 -1.2256 18 6 11.9936 11.8023 0.8252 19 7 11.3138 11.9352 1.9444 20 14 13.6908 12.5665 0.6671 21 1 13.5582 13.9828 0.2410 22 1 14.3847 12.5069 1.9785 23 1 14.4787 11.8171 -0.3444 24 6 9.4570 9.9204 -1.1316 25 6 9.5193 8.4034 -1.3289 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6768 1.9563 0.8899 32 1 1.6768 1.9563 -0.8900 33 1 3.9330 0.9287 -0.8909 34 1 3.9337 0.9284 0.8892 35 1 5.8730 2.4188 -0.8927 36 1 5.8745 2.4190 0.8874 37 1 7.8477 4.0233 -0.0037 38 1 7.1365 6.6077 0.8866 39 1 7.1358 6.6073 -0.8934 40 1 9.4663 5.7610 -0.8948 41 1 9.4676 5.7614 0.8852 42 1 9.6386 7.6484 2.0253 43 1 9.2531 10.2473 1.7497 44 1 10.9642 9.7852 1.9246 45 1 11.6939 12.4302 2.6870 46 1 9.7676 10.4244 -2.0467 47 1 8.4406 10.2173 -0.8729 48 1 10.4521 8.1429 -1.8290 49 1 8.6806 8.0856 -1.9484 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159651430.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:25:04 Heat of formation + Delta-G solvation = -86.846411 kcal Electronic energy + Delta-G solvation = -24666.983127 eV Core-core repulsion = 21014.474736 eV Total energy + Delta-G solvation = -3652.508391 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.86612 -39.50925 -38.77446 -36.72573 -35.79309 -35.12044 -33.20621 -31.55241 -31.02264 -30.09621 -28.37465 -26.76641 -24.65632 -24.19319 -23.86747 -22.47682 -22.12389 -21.57196 -19.46236 -18.27961 -17.82506 -17.57137 -17.48794 -17.02281 -16.53379 -16.50338 -15.78985 -15.75251 -15.46254 -15.34433 -15.11733 -14.83370 -14.44340 -14.30906 -13.91705 -13.90560 -13.61382 -13.37625 -13.19823 -12.84724 -12.84522 -12.78682 -12.57624 -12.42697 -12.34231 -12.17026 -11.96683 -11.89682 -11.85767 -11.66979 -11.52476 -11.25048 -10.87369 -10.68485 -10.66340 -10.14056 -9.48506 -8.75848 -7.88279 -5.30145 1.39773 1.46791 1.47670 1.56556 1.58240 1.88189 2.51185 2.98549 3.28723 3.65414 3.75072 3.97009 3.99702 4.08090 4.11443 4.14388 4.23526 4.24888 4.26967 4.32932 4.43884 4.48652 4.54968 4.59422 4.69276 4.69723 4.86728 4.91221 4.91771 4.95363 4.98029 5.03464 5.09132 5.17899 5.23645 5.24403 5.35326 5.38640 5.42123 5.44944 5.50118 5.60590 5.88275 6.11534 6.28849 6.33239 6.57545 7.12670 7.24401 7.82725 8.38212 9.20523 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.051067 B = 0.001683 C = 0.001679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.172386 B =16632.646133 C =16672.608889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C -0.122 4.122 4 C 0.057 3.943 5 O -0.405 6.405 6 C 0.049 3.951 7 C 0.503 3.497 8 O -0.582 6.582 9 N -0.710 5.710 10 C 0.132 3.868 11 C -0.077 4.077 12 C -0.122 4.122 13 C -0.174 4.174 14 C 0.205 3.795 15 N -0.615 5.615 16 C -0.259 4.259 17 H 0.072 0.928 18 C -0.056 4.056 19 N -0.942 5.942 20 Si 0.972 3.028 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.268 1.268 24 C 0.134 3.866 25 C -0.087 4.087 26 H 0.065 0.935 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.421 0.579 38 H 0.046 0.954 39 H 0.057 0.943 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.114 0.886 43 H 0.001 0.999 44 H 0.056 0.944 45 H 0.249 0.751 46 H 0.059 0.941 47 H 0.015 0.985 48 H 0.070 0.930 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.196 -29.226 -4.931 32.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.153 4.153 3 C -0.160 4.160 4 C -0.019 4.019 5 O -0.324 6.324 6 C -0.030 4.030 7 C 0.290 3.710 8 O -0.461 6.461 9 N -0.365 5.365 10 C 0.009 3.991 11 C -0.114 4.114 12 C -0.123 4.123 13 C -0.193 4.193 14 C 0.080 3.920 15 N -0.339 5.339 16 C -0.389 4.389 17 H 0.090 0.910 18 C -0.251 4.251 19 N -0.589 5.589 20 Si 0.799 3.201 21 H -0.213 1.213 22 H -0.218 1.218 23 H -0.193 1.193 24 C 0.008 3.992 25 C -0.126 4.126 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.259 0.741 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.114 0.886 41 H 0.105 0.895 42 H 0.132 0.868 43 H 0.019 0.981 44 H 0.074 0.926 45 H 0.058 0.942 46 H 0.078 0.922 47 H 0.033 0.967 48 H 0.089 0.911 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.872 -28.380 -4.812 31.532 hybrid contribution 1.106 0.830 0.441 1.452 sum -11.766 -27.549 -4.371 30.274 Atomic orbital electron populations 1.21783 0.95450 1.02238 1.01780 1.21412 0.96253 0.94593 1.03051 1.21575 0.93598 0.98337 1.02452 1.22787 0.95258 0.81972 1.01872 1.87977 1.20027 1.28605 1.95816 1.22331 0.83274 0.91868 1.05558 1.21063 0.82548 0.91903 0.75488 1.90735 1.51109 1.53784 1.50460 1.45749 1.06955 1.08880 1.74907 1.21166 0.95242 0.81454 1.01284 1.20796 0.93031 0.93008 1.04574 1.20601 1.01066 0.95885 0.94710 1.22822 1.01045 0.97267 0.98211 1.19380 0.97355 0.88145 0.87085 1.44462 1.28891 1.54655 1.05863 1.19560 1.05335 1.18321 0.95655 0.91037 1.25796 1.02773 0.99344 0.97189 1.70202 1.37721 1.45318 1.05662 0.85193 0.79917 0.78103 0.76845 1.21328 1.21839 1.19252 1.21165 0.92087 0.94618 0.91312 1.20714 1.01896 0.95130 0.94812 0.91602 0.93006 0.92951 0.90852 0.90931 0.92361 0.92266 0.91320 0.91446 0.86907 0.87128 0.74100 0.93522 0.92505 0.88570 0.89531 0.86825 0.98133 0.92587 0.94152 0.92239 0.96670 0.91147 0.89678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.91 71.98 0.71 -0.67 16 2 C -0.12 -0.99 5.93 30.60 0.18 -0.81 16 3 C -0.12 -1.62 5.58 30.59 0.17 -1.45 16 4 C 0.06 0.70 5.94 71.98 0.43 1.13 16 5 O -0.40 -8.44 9.88 -129.94 -1.28 -9.73 16 6 C 0.05 0.68 6.42 71.24 0.46 1.14 16 7 C 0.50 11.57 7.91 87.66 0.69 12.26 16 8 O -0.58 -20.76 16.50 16.00 0.26 -20.49 16 9 N -0.71 -12.36 5.56 -463.06 -2.57 -14.93 16 10 C 0.13 3.12 5.66 86.38 0.49 3.61 16 11 C -0.08 -1.64 5.32 29.85 0.16 -1.48 16 12 C -0.12 -3.93 5.11 -15.14 -0.08 -4.01 16 13 C -0.17 -6.72 9.47 27.10 0.26 -6.47 16 14 C 0.21 10.43 5.25 85.39 0.45 10.88 16 15 N -0.61 -32.14 3.01 -703.07 -2.12 -34.25 16 16 C -0.26 -14.62 9.71 84.03 0.82 -13.80 16 17 H 0.07 3.89 7.88 -2.91 -0.02 3.86 16 18 C -0.06 -3.23 5.01 84.86 0.43 -2.80 16 19 N -0.94 -57.20 11.07 21.65 0.24 -56.96 16 20 Si 0.97 45.56 29.58 68.60 2.03 47.59 16 21 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 22 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 24 C 0.13 5.71 6.57 86.25 0.57 6.27 16 25 C -0.09 -2.89 5.95 29.65 0.18 -2.71 16 26 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.11 0.84 8.14 -2.38 -0.02 0.82 16 37 H 0.42 3.63 8.47 -92.70 -0.79 2.84 16 38 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.06 1.51 8.08 -2.38 -0.02 1.49 16 40 H 0.10 1.63 8.11 -2.39 -0.02 1.61 16 41 H 0.09 1.61 7.78 -2.39 -0.02 1.60 16 42 H 0.11 3.80 7.73 -2.91 -0.02 3.78 16 43 H 0.00 0.05 8.14 -2.38 -0.02 0.03 16 44 H 0.06 3.17 6.39 -2.39 -0.02 3.16 16 45 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 46 H 0.06 2.45 7.96 -2.39 -0.02 2.43 16 47 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 49 H 0.08 2.33 8.08 -2.38 -0.02 2.31 16 Total: -1.00 -78.89 397.59 2.58 -76.31 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 0.12 Total: 11.39 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: 5.90 Total: 1.08 kcal Atomic # 7 Polarization: -101.69 SS G_CDS: -4.45 Total: -106.14 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -1.02 Total: -30.22 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -78.89 2.58 -76.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159651430.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.539 kcal (2) G-P(sol) polarization free energy of solvation -78.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds