Wall clock time and date at job start Tue Mar 31 2020 10:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42902 * 109.47586 * 2 1 4 4 C 1.53001 * 109.47038 * 120.00008 * 2 1 3 5 5 C 1.50701 * 109.47123 * 180.75546 * 4 2 1 6 6 O 1.21274 * 120.00134 * 354.32553 * 5 4 2 7 7 N 1.34777 * 119.99842 * 174.33099 * 5 4 2 8 8 C 1.46506 * 120.00099 * 179.72377 * 7 5 4 9 9 C 1.53002 * 109.47145 * 179.97438 * 8 7 5 10 10 C 1.53002 * 109.46914 * 174.80568 * 9 8 7 11 11 C 1.52998 * 115.54771 * 271.11460 * 10 9 8 12 12 N 1.46495 * 109.47351 * 297.34051 * 11 10 9 13 13 C 1.36937 * 120.00321 * 183.50569 * 12 11 10 14 14 H 1.07999 * 119.99623 * 359.97438 * 13 12 11 15 15 C 1.38811 * 120.00330 * 180.02562 * 13 12 11 16 16 N 1.31624 * 119.99490 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00242 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.47139 * 59.99599 * 17 15 13 19 19 H 1.48499 * 109.47270 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46709 * 299.99696 * 17 15 13 21 21 C 1.52997 * 117.49783 * 125.40882 * 10 9 8 22 22 C 1.53001 * 117.49861 * 56.78202 * 10 9 8 23 23 C 1.53005 * 109.47414 * 239.99677 * 2 1 3 24 24 C 1.53000 * 117.49980 * 128.61960 * 23 2 1 25 25 C 1.52994 * 60.00163 * 252.51770 * 24 23 2 26 26 H 1.08997 * 109.47167 * 304.09952 * 1 2 3 27 27 H 1.09001 * 109.46866 * 64.09429 * 1 2 3 28 28 H 1.09001 * 109.47590 * 184.09533 * 1 2 3 29 29 H 0.96692 * 113.99996 * 179.97438 * 3 2 1 30 30 H 1.09005 * 109.47252 * 60.75527 * 4 2 1 31 31 H 1.08999 * 109.46979 * 300.75562 * 4 2 1 32 32 H 0.97002 * 120.00044 * 359.97438 * 7 5 4 33 33 H 1.08998 * 109.46882 * 300.00062 * 8 7 5 34 34 H 1.08994 * 109.46706 * 59.99850 * 8 7 5 35 35 H 1.09001 * 109.46459 * 294.80270 * 9 8 7 36 36 H 1.09000 * 109.47094 * 54.80292 * 9 8 7 37 37 H 1.09003 * 109.47343 * 57.34086 * 11 10 9 38 38 H 1.08996 * 109.46792 * 177.33860 * 11 10 9 39 39 H 0.97003 * 120.00107 * 3.50360 * 12 11 10 40 40 H 0.97002 * 119.99587 * 180.02562 * 16 15 13 41 41 H 1.09000 * 117.49878 * 359.97438 * 21 10 9 42 42 H 1.08999 * 117.49700 * 145.02186 * 21 10 9 43 43 H 1.08995 * 117.49892 * 214.97344 * 22 10 9 44 44 H 1.08999 * 117.50096 * 0.02562 * 22 10 9 45 45 H 1.09001 * 115.55003 * 274.33928 * 23 2 1 46 46 H 1.09002 * 117.49464 * 0.02562 * 24 23 2 47 47 H 1.08995 * 117.49634 * 145.01984 * 24 23 2 48 48 H 1.09001 * 117.49919 * 252.51139 * 25 24 23 49 49 H 1.09003 * 117.50340 * 107.49210 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5468 -0.7051 1.2587 6 8 4.1544 -0.2617 0.3074 7 7 4.2192 -1.1834 2.3243 8 6 5.6842 -1.1733 2.3310 9 6 6.1923 -1.7661 3.6468 10 6 7.7178 -1.8752 3.6015 11 6 8.2690 -3.1814 3.0264 12 7 7.8512 -4.3022 3.8722 13 6 8.2876 -5.5700 3.5939 14 1 8.9396 -5.7436 2.7506 15 6 7.8913 -6.6320 4.3950 16 7 7.0963 -6.4204 5.4224 17 14 8.4872 -8.3613 4.0157 18 1 9.9704 -8.3986 4.0785 19 1 7.9251 -9.3082 5.0120 20 1 8.0393 -8.7518 2.6548 21 6 8.5073 -1.2115 4.7315 22 6 8.5100 -0.5945 3.3313 23 6 2.0400 -0.7213 -1.2492 24 6 3.0741 0.0051 -2.1117 25 6 1.6358 -0.1495 -2.6096 26 1 -0.3633 0.5761 0.8509 27 1 -0.3633 0.4490 -0.9244 28 1 -0.3634 -1.0250 0.0734 29 1 2.9703 1.4235 0.0004 30 1 1.6877 -1.7528 1.2425 31 1 1.6655 -0.2153 2.1392 32 1 3.7332 -1.5378 3.0853 33 1 6.0554 -1.7683 1.4966 34 1 6.0408 -0.1480 2.2331 35 1 5.8987 -1.1196 4.4738 36 1 5.7612 -2.7570 3.7893 37 1 7.8841 -3.3250 2.0167 38 1 9.3576 -3.1346 2.9969 39 1 7.2653 -4.1463 4.6294 40 1 6.8196 -7.1625 5.9825 41 1 7.9401 -0.6967 5.5069 42 1 9.4198 -1.7054 5.0654 43 1 9.4241 -0.6825 2.7443 44 1 7.9444 0.3260 3.1863 45 1 2.1266 -1.8046 -1.1642 46 1 3.3914 0.9967 -1.7889 47 1 3.8416 -0.6002 -2.5940 48 1 1.4568 -0.8566 -3.4196 49 1 1.0064 0.7404 -2.6146 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164145615.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:25:30 Heat of formation + Delta-G solvation = -37.643673 kcal Electronic energy + Delta-G solvation = -26162.948491 eV Core-core repulsion = 22512.573691 eV Total energy + Delta-G solvation = -3650.374800 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.51037 -38.72527 -38.00012 -35.10918 -34.78604 -33.93713 -32.46207 -30.80391 -30.20974 -28.10989 -25.99361 -23.93956 -23.05784 -22.74052 -22.27576 -21.75528 -20.73379 -19.96801 -18.56680 -17.26237 -17.08605 -16.88805 -16.39584 -15.91516 -15.42402 -15.09281 -14.74382 -14.44841 -14.22532 -13.97826 -13.53141 -13.17879 -12.97111 -12.89573 -12.71164 -12.60064 -12.43548 -12.31773 -12.14170 -11.91385 -11.48755 -11.37243 -11.19880 -11.10922 -10.98031 -10.84096 -10.62475 -10.51636 -10.31705 -10.17785 -9.97997 -9.94002 -9.72258 -9.57010 -9.33496 -9.03976 -8.85994 -6.92168 -5.78136 -3.05962 2.56516 3.12801 3.42837 3.47238 3.48089 3.76174 4.03682 4.07598 4.44884 4.54043 4.59492 4.61737 4.94439 4.99205 5.01914 5.08099 5.12942 5.17347 5.25135 5.28068 5.32076 5.40482 5.51466 5.57369 5.60789 5.61718 5.64191 5.68584 5.73844 5.90498 5.95578 5.98374 6.11063 6.13355 6.16011 6.20318 6.20890 6.40015 6.42260 6.44770 6.54608 6.74326 6.82146 7.44303 7.58949 7.68314 8.17142 8.41253 9.52688 10.10939 10.46628 11.44725 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014554 B = 0.002825 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.396185 B = 9909.510965 C =10843.455488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.179 3.821 3 O -0.564 6.564 4 C -0.171 4.171 5 C 0.512 3.488 6 O -0.538 6.538 7 N -0.726 5.726 8 C 0.125 3.875 9 C -0.093 4.093 10 C -0.119 4.119 11 C 0.189 3.811 12 N -0.728 5.728 13 C -0.239 4.239 14 H 0.069 0.931 15 C -0.014 4.014 16 N -0.934 5.934 17 Si 0.907 3.093 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.286 1.286 21 C -0.164 4.164 22 C -0.178 4.178 23 C -0.173 4.173 24 C -0.138 4.138 25 C -0.185 4.185 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.385 0.615 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.401 0.599 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.087 0.913 37 H 0.020 0.980 38 H 0.022 0.978 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.092 0.908 44 H 0.089 0.911 45 H 0.101 0.899 46 H 0.096 0.904 47 H 0.087 0.913 48 H 0.087 0.913 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.542 15.535 -8.250 21.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.138 3.862 3 O -0.375 6.375 4 C -0.211 4.211 5 C 0.299 3.701 6 O -0.416 6.416 7 N -0.377 5.377 8 C 0.002 3.998 9 C -0.131 4.131 10 C -0.120 4.120 11 C 0.061 3.939 12 N -0.372 5.372 13 C -0.370 4.370 14 H 0.087 0.913 15 C -0.209 4.209 16 N -0.583 5.583 17 Si 0.738 3.262 18 H -0.213 1.213 19 H -0.217 1.217 20 H -0.213 1.213 21 C -0.201 4.201 22 C -0.215 4.215 23 C -0.192 4.192 24 C -0.175 4.175 25 C -0.222 4.222 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.238 0.762 30 H 0.122 0.878 31 H 0.117 0.883 32 H 0.235 0.765 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.105 0.895 37 H 0.038 0.962 38 H 0.039 0.961 39 H 0.218 0.782 40 H 0.065 0.935 41 H 0.107 0.893 42 H 0.114 0.886 43 H 0.110 0.890 44 H 0.108 0.892 45 H 0.119 0.881 46 H 0.115 0.885 47 H 0.106 0.894 48 H 0.106 0.894 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.628 15.833 -9.002 21.609 hybrid contribution 0.607 -1.507 0.619 1.739 sum -11.020 14.326 -8.384 19.924 Atomic orbital electron populations 1.21734 0.92158 1.02387 1.03055 1.20291 0.93832 0.81745 0.90353 1.86413 1.28781 1.25539 1.96729 1.22489 0.93024 1.04074 1.01507 1.20583 0.89837 0.77402 0.82298 1.90652 1.70288 1.46564 1.34078 1.46124 1.08091 1.63479 1.20009 1.21375 0.78334 1.01088 0.98992 1.21280 0.93697 1.02392 0.95710 1.21557 0.92433 0.94428 1.03564 1.20165 0.95841 0.84502 0.93384 1.42288 1.58955 1.02413 1.33530 1.19193 1.23708 0.84443 1.09648 0.91330 1.24714 1.00371 0.97939 0.97916 1.69650 1.38989 1.30807 1.18848 0.86274 0.78214 0.84530 0.77222 1.21301 1.21693 1.21300 1.22983 1.02674 1.03188 0.91272 1.22982 1.02314 0.96331 0.99897 1.22819 1.05516 0.99178 0.91681 1.22666 0.91294 1.01983 1.01596 1.23000 0.99572 1.02988 0.96615 0.91853 0.91495 0.91053 0.76226 0.87832 0.88264 0.76511 0.91123 0.91730 0.91862 0.89471 0.96215 0.96056 0.78169 0.93523 0.89347 0.88625 0.88956 0.89228 0.88096 0.88539 0.89423 0.89418 0.88900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 8.74 37.15 0.32 -0.76 16 2 C 0.18 1.75 0.92 -90.62 -0.08 1.67 16 3 O -0.56 -6.51 12.10 -52.22 -0.63 -7.14 16 4 C -0.17 -1.50 4.96 -27.88 -0.14 -1.64 16 5 C 0.51 5.90 7.32 -10.99 -0.08 5.82 16 6 O -0.54 -7.45 11.38 -11.42 -0.13 -7.58 16 7 N -0.73 -8.09 5.56 -60.29 -0.33 -8.43 16 8 C 0.13 1.63 5.39 -4.04 -0.02 1.61 16 9 C -0.09 -1.30 5.26 -26.73 -0.14 -1.44 16 10 C -0.12 -1.86 1.66 -154.51 -0.26 -2.12 16 11 C 0.19 3.77 6.09 -4.05 -0.02 3.75 16 12 N -0.73 -18.03 5.32 -59.91 -0.32 -18.35 16 13 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 14 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 15 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 16 N -0.93 -27.80 13.06 55.49 0.72 -27.07 16 17 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 21 C -0.16 -2.39 9.90 -26.73 -0.26 -2.65 16 22 C -0.18 -2.34 9.46 -26.73 -0.25 -2.59 16 23 C -0.17 -1.82 4.03 -90.62 -0.37 -2.18 16 24 C -0.14 -1.55 7.94 -26.73 -0.21 -1.76 16 25 C -0.18 -1.80 9.62 -26.73 -0.26 -2.06 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.55 7.15 -51.93 -0.37 0.17 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.38 4.54 5.32 45.56 0.24 4.78 16 30 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.40 3.68 8.47 -40.82 -0.35 3.34 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 0.83 7.29 -51.93 -0.38 0.45 16 35 H 0.06 0.78 7.88 -51.93 -0.41 0.38 16 36 H 0.09 1.43 7.29 -51.93 -0.38 1.05 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.02 0.44 8.11 -51.93 -0.42 0.02 16 39 H 0.38 9.94 7.08 -40.82 -0.29 9.65 16 40 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.09 1.16 8.04 -51.93 -0.42 0.74 16 42 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 43 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 44 H 0.09 1.04 7.46 -51.93 -0.39 0.66 16 45 H 0.10 1.09 8.11 -51.93 -0.42 0.66 16 46 H 0.10 1.13 6.29 -51.93 -0.33 0.80 16 47 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.09 0.89 7.59 -51.93 -0.39 0.50 16 LS Contribution 388.72 15.07 5.86 5.86 Total: -1.00 -31.14 388.72 -9.95 -41.09 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: -8.07 Total: 15.97 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -2.02 Total: -11.63 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: 0.07 Total: -53.85 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -0.76 Total: -14.72 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.14 -9.95 -41.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164145615.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.445 kcal (2) G-P(sol) polarization free energy of solvation -31.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds