Wall clock time and date at job start Tue Mar 31 2020 10:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42902 * 109.47586 * 2 1 4 4 C 1.53001 * 109.47038 * 120.00008 * 2 1 3 5 5 C 1.50701 * 109.47123 * 180.75546 * 4 2 1 6 6 O 1.21274 * 120.00134 * 354.32553 * 5 4 2 7 7 N 1.34777 * 119.99842 * 174.33099 * 5 4 2 8 8 C 1.46506 * 120.00099 * 179.72377 * 7 5 4 9 9 C 1.53002 * 109.47145 * 179.97438 * 8 7 5 10 10 C 1.53002 * 109.46914 * 174.80568 * 9 8 7 11 11 C 1.52998 * 115.54771 * 271.11460 * 10 9 8 12 12 N 1.46495 * 109.47351 * 297.34051 * 11 10 9 13 13 C 1.36937 * 120.00321 * 183.50569 * 12 11 10 14 14 H 1.07999 * 119.99623 * 359.97438 * 13 12 11 15 15 C 1.38811 * 120.00330 * 180.02562 * 13 12 11 16 16 N 1.31624 * 119.99490 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00242 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.47139 * 59.99599 * 17 15 13 19 19 H 1.48499 * 109.47270 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46709 * 299.99696 * 17 15 13 21 21 C 1.52997 * 117.49783 * 125.40882 * 10 9 8 22 22 C 1.53001 * 117.49861 * 56.78202 * 10 9 8 23 23 C 1.53005 * 109.47414 * 239.99677 * 2 1 3 24 24 C 1.53000 * 117.49980 * 128.61960 * 23 2 1 25 25 C 1.52994 * 60.00163 * 252.51770 * 24 23 2 26 26 H 1.08997 * 109.47167 * 304.09952 * 1 2 3 27 27 H 1.09001 * 109.46866 * 64.09429 * 1 2 3 28 28 H 1.09001 * 109.47590 * 184.09533 * 1 2 3 29 29 H 0.96692 * 113.99996 * 179.97438 * 3 2 1 30 30 H 1.09005 * 109.47252 * 60.75527 * 4 2 1 31 31 H 1.08999 * 109.46979 * 300.75562 * 4 2 1 32 32 H 0.97002 * 120.00044 * 359.97438 * 7 5 4 33 33 H 1.08998 * 109.46882 * 300.00062 * 8 7 5 34 34 H 1.08994 * 109.46706 * 59.99850 * 8 7 5 35 35 H 1.09001 * 109.46459 * 294.80270 * 9 8 7 36 36 H 1.09000 * 109.47094 * 54.80292 * 9 8 7 37 37 H 1.09003 * 109.47343 * 57.34086 * 11 10 9 38 38 H 1.08996 * 109.46792 * 177.33860 * 11 10 9 39 39 H 0.97003 * 120.00107 * 3.50360 * 12 11 10 40 40 H 0.97002 * 119.99587 * 180.02562 * 16 15 13 41 41 H 1.09000 * 117.49878 * 359.97438 * 21 10 9 42 42 H 1.08999 * 117.49700 * 145.02186 * 21 10 9 43 43 H 1.08995 * 117.49892 * 214.97344 * 22 10 9 44 44 H 1.08999 * 117.50096 * 0.02562 * 22 10 9 45 45 H 1.09001 * 115.55003 * 274.33928 * 23 2 1 46 46 H 1.09002 * 117.49464 * 0.02562 * 24 23 2 47 47 H 1.08995 * 117.49634 * 145.01984 * 24 23 2 48 48 H 1.09001 * 117.49919 * 252.51139 * 25 24 23 49 49 H 1.09003 * 117.50340 * 107.49210 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5468 -0.7051 1.2587 6 8 4.1544 -0.2617 0.3074 7 7 4.2192 -1.1834 2.3243 8 6 5.6842 -1.1733 2.3310 9 6 6.1923 -1.7661 3.6468 10 6 7.7178 -1.8752 3.6015 11 6 8.2690 -3.1814 3.0264 12 7 7.8512 -4.3022 3.8722 13 6 8.2876 -5.5700 3.5939 14 1 8.9396 -5.7436 2.7506 15 6 7.8913 -6.6320 4.3950 16 7 7.0963 -6.4204 5.4224 17 14 8.4872 -8.3613 4.0157 18 1 9.9704 -8.3986 4.0785 19 1 7.9251 -9.3082 5.0120 20 1 8.0393 -8.7518 2.6548 21 6 8.5073 -1.2115 4.7315 22 6 8.5100 -0.5945 3.3313 23 6 2.0400 -0.7213 -1.2492 24 6 3.0741 0.0051 -2.1117 25 6 1.6358 -0.1495 -2.6096 26 1 -0.3633 0.5761 0.8509 27 1 -0.3633 0.4490 -0.9244 28 1 -0.3634 -1.0250 0.0734 29 1 2.9703 1.4235 0.0004 30 1 1.6877 -1.7528 1.2425 31 1 1.6655 -0.2153 2.1392 32 1 3.7332 -1.5378 3.0853 33 1 6.0554 -1.7683 1.4966 34 1 6.0408 -0.1480 2.2331 35 1 5.8987 -1.1196 4.4738 36 1 5.7612 -2.7570 3.7893 37 1 7.8841 -3.3250 2.0167 38 1 9.3576 -3.1346 2.9969 39 1 7.2653 -4.1463 4.6294 40 1 6.8196 -7.1625 5.9825 41 1 7.9401 -0.6967 5.5069 42 1 9.4198 -1.7054 5.0654 43 1 9.4241 -0.6825 2.7443 44 1 7.9444 0.3260 3.1863 45 1 2.1266 -1.8046 -1.1642 46 1 3.3914 0.9967 -1.7889 47 1 3.8416 -0.6002 -2.5940 48 1 1.4568 -0.8566 -3.4196 49 1 1.0064 0.7404 -2.6146 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164145615.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:25:29 Heat of formation + Delta-G solvation = -57.458649 kcal Electronic energy + Delta-G solvation = -26163.807732 eV Core-core repulsion = 22512.573691 eV Total energy + Delta-G solvation = -3651.234042 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.37698 -39.82174 -39.02923 -36.08968 -35.89528 -35.62357 -33.24417 -32.79381 -31.21749 -28.91123 -27.78713 -24.92583 -24.60424 -23.99309 -23.12335 -22.90432 -21.65156 -20.78075 -19.94140 -19.03220 -18.09605 -17.76900 -17.31999 -16.94841 -16.63892 -16.35268 -16.09119 -15.76016 -15.31398 -15.16172 -14.89433 -14.70506 -14.22579 -13.94086 -13.80633 -13.67877 -13.29331 -13.16005 -13.05392 -12.97723 -12.88398 -12.76647 -12.55679 -12.29038 -12.20761 -12.14451 -11.96716 -11.92940 -11.80509 -11.35183 -11.20342 -11.11909 -10.90590 -10.77561 -10.61254 -10.42161 -10.01503 -8.98095 -7.95394 -5.23015 1.46282 1.48607 1.54809 1.67845 2.23047 2.53932 2.89047 2.95662 3.31437 3.37622 3.66347 3.76982 3.81408 3.85351 3.88806 3.97867 4.08576 4.13664 4.20529 4.27805 4.41113 4.44083 4.49033 4.56049 4.64008 4.69118 4.77067 4.82712 4.83589 4.91306 4.92259 4.99062 5.00075 5.06773 5.15855 5.20417 5.27204 5.31170 5.32085 5.33244 5.37213 5.38199 5.47807 5.50114 6.27094 6.58121 6.73428 7.29610 7.34283 8.10277 8.36337 9.27628 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014554 B = 0.002825 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.396185 B = 9909.510965 C =10843.455488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.174 3.826 3 O -0.574 6.574 4 C -0.164 4.164 5 C 0.507 3.493 6 O -0.564 6.564 7 N -0.722 5.722 8 C 0.137 3.863 9 C -0.079 4.079 10 C -0.138 4.138 11 C 0.189 3.811 12 N -0.735 5.735 13 C -0.249 4.249 14 H 0.069 0.931 15 C -0.070 4.070 16 N -0.965 5.965 17 Si 0.970 3.030 18 H -0.280 1.280 19 H -0.293 1.293 20 H -0.280 1.280 21 C -0.165 4.165 22 C -0.150 4.150 23 C -0.175 4.175 24 C -0.153 4.153 25 C -0.172 4.172 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.088 0.912 29 H 0.381 0.619 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.411 0.589 33 H 0.043 0.957 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.058 0.942 37 H 0.012 0.988 38 H 0.016 0.984 39 H 0.377 0.623 40 H 0.252 0.748 41 H 0.107 0.893 42 H 0.079 0.921 43 H 0.095 0.905 44 H 0.114 0.886 45 H 0.097 0.903 46 H 0.088 0.912 47 H 0.076 0.924 48 H 0.098 0.902 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.462 16.247 -8.220 22.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.133 3.867 3 O -0.385 6.385 4 C -0.204 4.204 5 C 0.295 3.705 6 O -0.444 6.444 7 N -0.374 5.374 8 C 0.013 3.987 9 C -0.117 4.117 10 C -0.139 4.139 11 C 0.063 3.937 12 N -0.378 5.378 13 C -0.381 4.381 14 H 0.087 0.913 15 C -0.263 4.263 16 N -0.616 5.616 17 Si 0.799 3.201 18 H -0.206 1.206 19 H -0.219 1.219 20 H -0.206 1.206 21 C -0.202 4.202 22 C -0.188 4.188 23 C -0.193 4.193 24 C -0.190 4.190 25 C -0.209 4.209 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.107 0.893 29 H 0.234 0.766 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.247 0.753 33 H 0.061 0.939 34 H 0.090 0.910 35 H 0.104 0.896 36 H 0.077 0.923 37 H 0.030 0.970 38 H 0.034 0.966 39 H 0.210 0.790 40 H 0.061 0.939 41 H 0.126 0.874 42 H 0.097 0.903 43 H 0.114 0.886 44 H 0.132 0.868 45 H 0.116 0.884 46 H 0.106 0.894 47 H 0.095 0.905 48 H 0.116 0.884 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.545 16.561 -8.988 22.637 hybrid contribution 0.941 -1.693 0.555 2.015 sum -11.604 14.867 -8.433 20.659 Atomic orbital electron populations 1.21759 0.90556 1.03631 1.03192 1.20500 0.94941 0.81010 0.90286 1.86408 1.28510 1.26759 1.96790 1.22509 0.90689 1.05307 1.01905 1.21112 0.91020 0.76665 0.81729 1.90651 1.71072 1.47641 1.35002 1.46067 1.07355 1.63427 1.20540 1.21126 0.79513 1.00728 0.97346 1.21120 0.92356 1.01309 0.96945 1.21412 0.93651 0.93508 1.05334 1.20210 0.95444 0.85511 0.92565 1.42427 1.58740 1.02847 1.33815 1.19567 1.23183 0.85944 1.09378 0.91259 1.25485 1.01064 1.01609 0.98124 1.69794 1.40371 1.31550 1.19839 0.85267 0.77841 0.79960 0.77023 1.20612 1.21869 1.20602 1.23026 1.01890 1.03074 0.92240 1.23053 1.01758 0.95534 0.98439 1.22885 1.04964 0.98977 0.92476 1.22584 0.91919 1.01611 1.02883 1.23023 0.98134 1.03115 0.96592 0.91240 0.91811 0.89328 0.76644 0.86064 0.86256 0.75263 0.93889 0.90957 0.89602 0.92308 0.97035 0.96636 0.79039 0.93941 0.87450 0.90270 0.88648 0.86792 0.88443 0.89383 0.90524 0.88395 0.88621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 8.74 71.98 0.63 -1.21 16 2 C 0.17 3.12 0.92 -10.79 -0.01 3.11 16 3 O -0.57 -12.72 12.10 -132.74 -1.61 -14.33 16 4 C -0.16 -2.55 4.96 29.85 0.15 -2.40 16 5 C 0.51 11.11 7.32 87.66 0.64 11.76 16 6 O -0.56 -15.48 11.38 13.23 0.15 -15.33 16 7 N -0.72 -15.22 5.56 -463.06 -2.57 -17.79 16 8 C 0.14 3.44 5.39 86.38 0.47 3.91 16 9 C -0.08 -2.15 5.26 30.60 0.16 -1.99 16 10 C -0.14 -4.22 1.66 -52.18 -0.09 -4.31 16 11 C 0.19 7.67 6.09 86.38 0.53 8.20 16 12 N -0.74 -37.12 5.32 -343.47 -1.83 -38.95 16 13 C -0.25 -13.99 9.99 84.03 0.84 -13.15 16 14 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 15 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 16 N -0.97 -58.10 13.06 21.65 0.28 -57.81 16 17 Si 0.97 46.04 29.55 68.60 2.03 48.07 16 18 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 19 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 20 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 21 C -0.17 -4.55 9.90 30.60 0.30 -4.25 16 22 C -0.15 -3.63 9.46 30.60 0.29 -3.34 16 23 C -0.17 -3.51 4.03 -10.79 -0.04 -3.55 16 24 C -0.15 -3.46 7.94 30.59 0.24 -3.21 16 25 C -0.17 -3.19 9.62 30.59 0.29 -2.89 16 26 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.06 0.92 7.15 -2.39 -0.02 0.90 16 28 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.38 8.92 5.32 -74.06 -0.39 8.53 16 30 H 0.12 1.48 8.14 -2.38 -0.02 1.46 16 31 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.41 6.90 8.47 -92.71 -0.79 6.11 16 33 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.07 1.72 7.29 -2.39 -0.02 1.70 16 35 H 0.09 1.94 7.88 -2.39 -0.02 1.92 16 36 H 0.06 1.94 7.29 -2.39 -0.02 1.92 16 37 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.02 0.65 8.11 -2.39 -0.02 0.63 16 39 H 0.38 19.92 7.08 -92.71 -0.66 19.26 16 40 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 41 H 0.11 2.55 8.04 -2.39 -0.02 2.53 16 42 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 43 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 44 H 0.11 2.25 7.46 -2.39 -0.02 2.23 16 45 H 0.10 2.01 8.11 -2.39 -0.02 1.99 16 46 H 0.09 2.12 6.29 -2.39 -0.02 2.10 16 47 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 48 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 49 H 0.10 1.73 7.59 -2.39 -0.02 1.71 16 Total: -1.00 -67.27 388.72 0.44 -66.83 By element: Atomic # 1 Polarization: 47.09 SS G_CDS: -0.88 Total: 46.21 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: 4.87 Total: -16.89 kcal Atomic # 7 Polarization: -110.44 SS G_CDS: -4.12 Total: -114.55 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -1.46 Total: -29.66 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -67.27 0.44 -66.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164145615.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.368 kcal (2) G-P(sol) polarization free energy of solvation -67.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds