Wall clock time and date at job start Tue Mar 31 2020 10:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47215 * 2 1 4 4 H 1.08999 * 109.82145 * 54.11295 * 3 2 1 5 5 C 1.54373 * 109.82942 * 175.00200 * 3 2 1 6 6 C 1.55312 * 102.25520 * 140.86846 * 5 3 2 7 7 C 1.54946 * 100.93886 * 325.86755 * 6 5 3 8 8 H 1.09007 * 110.30394 * 277.42797 * 7 6 5 9 9 C 1.50692 * 110.31092 * 155.36122 * 7 6 5 10 10 O 1.21283 * 119.99732 * 244.99780 * 9 7 6 11 11 N 1.34776 * 120.00370 * 64.99212 * 9 7 6 12 12 C 1.46502 * 120.00163 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.47125 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.46985 * 174.93704 * 13 12 11 15 15 C 1.52999 * 115.55419 * 65.28810 * 14 13 12 16 16 N 1.46489 * 109.47025 * 65.14730 * 15 14 13 17 17 C 1.36946 * 119.99730 * 175.04568 * 16 15 14 18 18 H 1.07997 * 120.00022 * 359.97438 * 17 16 15 19 19 C 1.38808 * 119.99802 * 179.97438 * 17 16 15 20 20 N 1.31623 * 120.00353 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00007 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46732 * 60.00523 * 21 19 17 23 23 H 1.48497 * 109.47123 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47413 * 300.00595 * 21 19 17 25 25 C 1.53008 * 117.49620 * 279.61526 * 14 13 12 26 26 C 1.53000 * 117.49504 * 210.95725 * 14 13 12 27 27 O 1.43237 * 109.82512 * 293.13369 * 3 2 1 28 28 H 1.08996 * 109.47359 * 60.00403 * 1 2 3 29 29 H 1.09008 * 109.47070 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47069 * 300.00067 * 1 2 3 31 31 H 1.09001 * 109.47069 * 239.99933 * 2 1 3 32 32 H 1.08999 * 109.47117 * 120.00056 * 2 1 3 33 33 H 1.09001 * 110.84838 * 259.05452 * 5 3 2 34 34 H 1.09006 * 110.85373 * 22.47669 * 5 3 2 35 35 H 1.09004 * 111.12062 * 83.77887 * 6 5 3 36 36 H 1.08996 * 111.12681 * 207.90030 * 6 5 3 37 37 H 0.96995 * 119.99971 * 0.02562 * 11 9 7 38 38 H 1.09008 * 109.46943 * 300.00441 * 12 11 9 39 39 H 1.09000 * 109.47598 * 59.99989 * 12 11 9 40 40 H 1.08999 * 109.46644 * 294.93025 * 13 12 11 41 41 H 1.08992 * 109.47169 * 54.93341 * 13 12 11 42 42 H 1.09001 * 109.46934 * 185.15123 * 15 14 13 43 43 H 1.09008 * 109.46811 * 305.14444 * 15 14 13 44 44 H 0.97001 * 120.00409 * 355.04583 * 16 15 14 45 45 H 0.97002 * 120.00037 * 179.97438 * 20 19 17 46 46 H 1.09000 * 117.49902 * 0.02562 * 25 14 13 47 47 H 1.08998 * 117.49736 * 145.02024 * 25 14 13 48 48 H 1.09004 * 117.50008 * 214.97457 * 26 14 13 49 49 H 1.08999 * 117.50316 * 0.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5965 1.9913 0.8308 5 6 3.5785 1.4540 0.1265 6 6 3.9798 2.6054 -0.8355 7 6 2.8993 2.4588 -1.9363 8 1 3.1873 1.6853 -2.6484 9 6 2.6945 3.7721 -2.6464 10 8 1.6306 4.3481 -2.5610 11 7 3.6936 4.3067 -3.3761 12 6 3.4947 5.5837 -4.0659 13 6 4.7731 5.9626 -4.8163 14 6 4.5258 7.2295 -5.6377 15 6 4.2380 8.4954 -4.8281 16 7 5.4237 8.8554 -4.0468 17 6 5.4378 10.0153 -3.3189 18 1 4.5750 10.6649 -3.3213 19 6 6.5611 10.3562 -2.5782 20 7 7.6129 9.5649 -2.5757 21 14 6.5808 11.9388 -1.5859 22 1 5.4857 11.9079 -0.5833 23 1 7.8855 12.0700 -0.8891 24 1 6.3863 13.0961 -2.4959 25 6 3.8101 7.0720 -6.9809 26 6 5.3073 7.3885 -6.9434 27 8 1.7028 2.0770 -1.2391 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8820 1.6792 1.1489 34 1 4.0019 0.5047 -0.2018 35 1 3.9075 3.5739 -0.3405 36 1 4.9791 2.4479 -1.2413 37 1 4.5444 3.8459 -3.4446 38 1 2.6720 5.4895 -4.7748 39 1 3.2583 6.3581 -3.3361 40 1 5.5743 6.1447 -4.1000 41 1 5.0587 5.1481 -5.4817 42 1 3.9881 9.3114 -5.5062 43 1 3.4004 8.3133 -4.1545 44 1 6.1988 8.2722 -4.0449 45 1 8.3980 9.8033 -2.0583 46 1 3.5150 6.0659 -7.2791 47 1 3.1344 7.8704 -7.2878 48 1 5.6160 8.3950 -7.2259 49 1 5.9973 6.5905 -7.2175 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165293907.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:54 Heat of formation + Delta-G solvation = -64.222442 kcal Electronic energy + Delta-G solvation = -25865.357710 eV Core-core repulsion = 22213.830369 eV Total energy + Delta-G solvation = -3651.527342 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.48606 -38.90116 -38.08476 -34.80339 -33.90116 -33.82566 -32.47008 -30.80299 -30.32549 -28.55630 -25.91433 -24.77894 -23.12500 -22.71558 -22.17195 -21.82009 -21.24694 -20.30437 -18.59339 -17.71982 -17.03671 -16.89272 -15.98235 -15.82415 -15.34878 -14.92549 -14.61073 -14.39910 -14.30226 -14.17758 -13.62712 -13.46838 -13.21743 -13.14317 -13.08270 -12.63828 -12.33248 -12.21407 -12.13495 -11.87968 -11.77136 -11.35590 -11.24937 -11.19062 -11.16241 -10.99448 -10.93879 -10.80989 -10.57060 -10.16262 -10.06702 -9.90526 -9.69774 -9.43910 -9.27975 -8.97475 -8.81350 -6.88272 -5.74772 -3.02245 2.62802 2.86125 3.45755 3.49797 3.50934 3.73451 4.07971 4.12344 4.34746 4.50058 4.63057 4.71739 4.78756 4.85380 4.98635 5.00826 5.08501 5.09913 5.15343 5.18583 5.33639 5.40687 5.45967 5.52114 5.54258 5.59453 5.60245 5.67857 5.73526 5.74375 5.80196 5.91345 5.95566 6.07012 6.18466 6.19628 6.23750 6.43409 6.47386 6.50067 6.54120 6.73428 6.79775 6.85365 7.52757 7.72001 8.26894 8.44661 9.56189 10.14521 10.50257 11.48140 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.013321 B = 0.002862 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.481438 B = 9780.130992 C =11136.288849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.132 4.132 3 C 0.075 3.925 4 H 0.083 0.917 5 C -0.149 4.149 6 C -0.147 4.147 7 C 0.065 3.935 8 H 0.094 0.906 9 C 0.510 3.490 10 O -0.521 6.521 11 N -0.725 5.725 12 C 0.125 3.875 13 C -0.088 4.088 14 C -0.119 4.119 15 C 0.186 3.814 16 N -0.727 5.727 17 C -0.237 4.237 18 H 0.069 0.931 19 C -0.014 4.014 20 N -0.935 5.935 21 Si 0.906 3.094 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.178 4.178 26 C -0.163 4.163 27 O -0.346 6.346 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.398 0.602 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.022 0.978 43 H 0.022 0.978 44 H 0.384 0.616 45 H 0.254 0.746 46 H 0.088 0.912 47 H 0.092 0.908 48 H 0.096 0.904 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.788 -21.299 -0.003 22.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.169 4.169 3 C 0.018 3.982 4 H 0.101 0.899 5 C -0.187 4.187 6 C -0.185 4.185 7 C 0.004 3.996 8 H 0.112 0.888 9 C 0.294 3.706 10 O -0.395 6.395 11 N -0.378 5.378 12 C 0.002 3.998 13 C -0.125 4.125 14 C -0.120 4.120 15 C 0.059 3.941 16 N -0.371 5.371 17 C -0.368 4.368 18 H 0.087 0.913 19 C -0.210 4.210 20 N -0.584 5.584 21 Si 0.737 3.263 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.216 4.216 26 C -0.200 4.200 27 O -0.264 6.264 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.232 0.768 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.080 0.920 42 H 0.040 0.960 43 H 0.040 0.960 44 H 0.218 0.782 45 H 0.064 0.936 46 H 0.107 0.893 47 H 0.110 0.890 48 H 0.114 0.886 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.850 -20.676 0.076 22.116 hybrid contribution 1.030 0.469 0.590 1.276 sum -6.819 -20.207 0.666 21.337 Atomic orbital electron populations 1.21719 0.95188 1.01320 1.02587 1.21903 0.97159 0.95549 1.02307 1.22893 0.94345 0.93606 0.87392 0.89949 1.23186 0.95206 0.99148 1.01164 1.23265 0.98877 1.00535 0.95825 1.22799 0.86665 0.94676 0.95488 0.88842 1.20385 0.84333 0.86566 0.79296 1.90733 1.25859 1.62063 1.60869 1.45948 1.16018 1.24331 1.51503 1.21385 0.98086 0.84248 0.96106 1.21211 0.97331 0.95306 0.98682 1.21555 1.04754 0.96880 0.88854 1.20202 0.91039 0.90577 0.92295 1.42270 1.14201 1.25293 1.55336 1.19197 0.99305 0.97919 1.20367 0.91325 1.24704 0.96394 0.98818 1.01068 1.69649 1.04971 1.38011 1.45735 0.86281 0.76614 0.83361 0.80036 1.21294 1.21733 1.21319 1.23006 0.95540 1.02134 1.00872 1.22938 0.93550 1.02785 1.00750 1.88563 1.27263 1.77891 1.32671 0.91819 0.92970 0.92805 0.91503 0.91013 0.89543 0.90040 0.89405 0.88867 0.76805 0.91645 0.90519 0.89876 0.92032 0.95969 0.96039 0.78202 0.93576 0.89310 0.88968 0.88557 0.89370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.83 37.16 0.37 -0.87 16 2 C -0.13 -0.99 5.50 -26.73 -0.15 -1.14 16 3 C 0.08 0.70 3.51 -26.01 -0.09 0.61 16 4 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 5 C -0.15 -1.07 6.54 -24.79 -0.16 -1.23 16 6 C -0.15 -1.27 6.55 -24.48 -0.16 -1.43 16 7 C 0.06 0.71 3.86 -26.86 -0.10 0.60 16 8 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 9 C 0.51 7.34 7.19 -10.99 -0.08 7.26 16 10 O -0.52 -10.07 16.55 -13.80 -0.23 -10.30 16 11 N -0.72 -8.99 5.54 -60.29 -0.33 -9.32 16 12 C 0.12 1.82 5.41 -4.04 -0.02 1.80 16 13 C -0.09 -1.24 5.12 -26.73 -0.14 -1.37 16 14 C -0.12 -1.90 1.56 -154.50 -0.24 -2.14 16 15 C 0.19 3.79 5.93 -4.05 -0.02 3.77 16 16 N -0.73 -18.22 5.52 -59.91 -0.33 -18.55 16 17 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 18 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 20 N -0.93 -28.05 13.06 55.49 0.72 -27.32 16 21 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 C -0.18 -2.38 9.94 -26.69 -0.27 -2.64 16 26 C -0.16 -2.39 9.94 -26.69 -0.27 -2.66 16 27 O -0.35 -4.46 9.90 -54.58 -0.54 -5.00 16 28 H 0.06 0.63 7.90 -51.93 -0.41 0.22 16 29 H 0.05 0.36 8.14 -51.92 -0.42 -0.07 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.46 7.85 -51.93 -0.41 0.05 16 35 H 0.09 0.91 8.05 -51.93 -0.42 0.50 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.40 3.66 8.47 -40.82 -0.35 3.31 16 38 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 39 H 0.08 1.37 7.23 -51.93 -0.38 0.99 16 40 H 0.08 1.34 7.49 -51.93 -0.39 0.95 16 41 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 42 H 0.02 0.47 8.09 -51.93 -0.42 0.05 16 43 H 0.02 0.46 7.11 -51.92 -0.37 0.09 16 44 H 0.38 10.02 7.03 -40.82 -0.29 9.73 16 45 H 0.25 7.41 8.31 -40.82 -0.34 7.08 16 46 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 48 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 49 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 397.10 15.07 5.98 5.98 Total: -1.00 -34.10 397.10 -10.21 -44.31 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -8.88 Total: 9.37 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -1.58 Total: -6.76 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: 0.06 Total: -55.19 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.77 Total: -15.29 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.10 -10.21 -44.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165293907.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.910 kcal (2) G-P(sol) polarization free energy of solvation -34.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds